Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0300531 Rosa chinensis HOM05D007089 ORTHO05D008959 4.2e-245 850.9 418 100.0
FvH4_2g40230 Fragaria vesca HOM05D007089 ORTHO05D008959 2.5e-210 735.3 418 88.8
FAN15G3100 Fragaria x ananassa HOM05D007089 ORTHO05D008959 5.3e-208 727.6 426 87.1
Prupe.1G383100 Prunus persica HOM05D007089 ORTHO05D008959 8.0e-180 634.0 416 73.8
MD04G1062700 Malus domestica HOM05D007089 ORTHO05D008959 6.6e-166 587.8 419 71.6
CSS0000683 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 5.8e-154 548.1 422 65.9
Cfa018438 Carpinus fangiana HOM05D007089 ORTHO05D008959 2.9e-153 545.8 415 66.7
Hma1.2p1_0203F.1_g086680 Hydrangea macrophylla HOM05D007089 ORTHO05D008959 9.2e-152 540.8 420 63.8
CiPaw.09G208600 Carya illinoinensis HOM05D007089 ORTHO05D008959 2.5e-149 532.7 421 65.3
CANSAT25G1057 Cannabis sativa HOM05D007089 ORTHO05D008959 5.2e-147 525.0 424 62.7
Atru.chr13.537 Acer truncatum HOM05D007089 ORTHO05D008959 4.4e-146 521.9 414 63.3
Gorai.010G011900 Gossypium raimondii HOM05D007089 ORTHO05D008959 5.8e-146 521.5 417 62.6
GSVIVG01009652001 Vitis vinifera HOM05D007089 ORTHO05D008959 5.8e-146 521.5 418 62.7
Ciclev10001360m.g Citrus clementina HOM05D007089 ORTHO05D008959 6.4e-145 518.1 420 62.6
Gohir.D06G009100 Gossypium hirsutum HOM05D007089 ORTHO05D008959 8.3e-145 517.7 417 62.1
COL.COLO4_26368 Corchorus olitorius HOM05D007089 ORTHO05D008959 1.9e-144 516.5 414 61.8
Gohir.A06G011700 Gossypium hirsutum HOM05D007089 ORTHO05D008959 9.2e-144 514.2 417 62.1
Manes.05G163100 Manihot esculenta HOM05D007089 ORTHO05D008959 1.2e-143 513.8 422 61.1
Haze_17627 Corylus avellana HOM05D007089 ORTHO05D008959 1.3e-142 510.4 422 63.0
Nitab4.5_0005314g0050 Nicotiana tabacum HOM05D007089 ORTHO05D008959 2.3e-142 509.6 415 61.0
QL02p007525 Quercus lobata HOM05D007089 ORTHO05D008959 2.3e-142 509.6 542 53.1
Lj4A43T59 Lonicera japonica HOM05D007089 ORTHO05D008959 5.1e-142 508.4 425 60.7
Sopen04g033530 Solanum pennellii HOM05D007089 ORTHO05D008959 3.3e-141 505.8 412 60.2
PGR083G0581 Punica granatum HOM05D007089 ORTHO05D008959 2.8e-140 502.7 421 62.0
Potri.014G041400 Populus trichocarpa HOM05D007089 ORTHO05D008959 6.2e-140 501.5 421 60.8
Migut.N00515 Erythranthe guttata HOM05D007089 ORTHO05D008959 4.0e-139 498.8 425 59.3
MSTRG.22295 Avicennia marina HOM05D007089 ORTHO05D008959 8.9e-139 497.7 431 59.2
Oeu015592.2 Olea europaea HOM05D007089 ORTHO05D008959 8.9e-139 497.7 440 58.0
PGSC0003DMG400027847 Solanum tuberosum HOM05D007089 ORTHO05D008959 1.2e-138 497.3 412 58.7
SGA_v2.0_scaffold33G13513 Striga asiatica HOM05D007089 ORTHO05D008959 2.2e-137 493.0 438 59.4
CAN.G1126.18 Capsicum annuum HOM05D007089 ORTHO05D008959 4.1e-136 488.8 422 58.8
Eucgr.F01540 Eucalyptus grandis HOM05D007089 ORTHO05D008959 1.7e-134 483.4 416 56.7
Solyc04g079950.4 Solanum lycopersicum HOM05D007089 ORTHO05D008959 6.6e-134 481.5 397 61.2
Rhsim07G0236000 Rhododendron simsii HOM05D007089 ORTHO05D008959 1.9e-133 479.9 473 56.4
TAR381G0661 Trochodendron aralioides HOM05D007089 ORTHO05D008959 1.2e-132 477.2 417 59.7
Nn1g05102 Nelumbo nucifera HOM05D007089 ORTHO05D008959 8.1e-132 474.6 407 58.2
PSO170G0803 Papaver somniferum HOM05D007089 ORTHO05D008959 1.1e-131 474.2 415 59.3
PSO700G0257 Papaver somniferum HOM05D007089 ORTHO05D008959 1.1e-131 474.2 420 59.3
Glyma.14G077000 Glycine max HOM05D007089 ORTHO05D008959 1.4e-131 473.8 417 57.1
HanXRQChr14g0437051 Helianthus annuus HOM05D007089 ORTHO05D008959 1.4e-131 473.8 409 58.2
ClCG08G015310 Citrullus lanatus HOM05D007089 ORTHO05D008959 5.2e-131 471.9 420 55.0
Cc10_g03320 Coffea canephora HOM05D007089 ORTHO05D008959 1.2e-130 470.7 426 56.8
Peaxi162Scf00057g00723 Petunia axillaris HOM05D007089 ORTHO05D008959 1.5e-130 470.3 414 59.7
Sc02g0006440 Simmondsia chinensis HOM05D007089 ORTHO05D008959 5.8e-130 468.4 422 55.9
Aqoxy5G01701 Aquilegia oxysepala HOM05D007089 ORTHO05D008959 9.9e-130 467.6 408 54.9
Ca_13340_v3 Cicer arietinum L. HOM05D007089 ORTHO05D008959 1.7e-129 466.8 430 58.4
FAN20G0063 Fragaria x ananassa HOM05D007089 ORTHO05D008959 2.2e-129 466.5 334 75.4
SalBow8G1187 Salvia bowleyana HOM05D007089 ORTHO05D008959 8.4e-129 464.5 451 55.4
SalBow8G1554 Salvia bowleyana HOM05D007089 ORTHO05D008959 8.4e-129 464.5 451 55.4
Lalb_Chr14g0369091 Lupinus albus HOM05D007089 ORTHO05D008959 7.1e-128 461.5 417 55.6
Psat6g006920 Pisum sativum HOM05D007089 ORTHO05D008959 1.2e-127 460.7 418 58.1
arahy.Tifrunner.gnm1.ann1.4B2PQ4 Arachis hypogaea HOM05D007089 ORTHO05D008959 2.7e-127 459.5 418 59.1
Medtr1g021985 Medicago truncatula HOM05D007089 ORTHO05D008959 7.8e-127 458.0 415 57.3
Nitab4.5_0000110g0230 Nicotiana tabacum HOM05D007089 ORTHO05D008959 7.8e-127 458.0 372 61.6
PSO832G2704 Papaver somniferum HOM05D007089 ORTHO05D008959 7.8e-127 458.0 420 57.6
Aa31LG7G4040 Aethionema arabicum HOM05D007089 ORTHO05D008959 1.3e-126 457.2 418 57.9
TPR.G15730 Trifolium pratense HOM05D007089 ORTHO05D008959 6.6e-126 454.9 424 57.5
VMungo0647G2017 Vigna mungo HOM05D007089 ORTHO05D008959 6.6e-126 454.9 425 55.8
vmacro04507 Vaccinium macrocarpon HOM05D007089 ORTHO05D008959 8.7e-126 454.5 436 56.4
DCAR_008774 Daucus carota HOM05D007089 ORTHO05D008959 6.2e-124 448.4 376 59.0
Duzib041G0709 Durio zibethinus HOM05D007089 ORTHO05D008959 8.1e-124 448.0 419 55.8
Carub.0001s1893 Capsella rubella HOM05D007089 ORTHO05D008959 1.8e-123 446.8 418 54.1
Sabra14G0030300 Salix brachista HOM05D007089 ORTHO05D008959 2.4e-123 446.4 376 61.4
Sp1g17250 Schrenkiella parvula HOM05D007089 ORTHO05D008959 5.3e-123 445.3 415 54.2
Ah.08g217460 Amaranthus hybridus HOM05D007089 ORTHO05D008959 5.8e-122 441.8 429 51.3
AUR62025603 Chenopodium quinoa HOM05D007089 ORTHO05D008959 9.9e-122 441.0 454 51.5
A06p15500 Brassica napus HOM05D007089 ORTHO05D008959 1.7e-121 440.3 415 53.5
THA.LOC104809053 Tarenaya hassleriana HOM05D007089 ORTHO05D008959 1.7e-121 440.3 418 56.9
BraA06t24662Z Brassica rapa HOM05D007089 ORTHO05D008959 3.8e-121 439.1 415 53.5
AL1G31930 Arabidopsis lyrata HOM05D007089 ORTHO05D008959 4.9e-121 438.7 419 55.4
C05p17740 Brassica napus HOM05D007089 ORTHO05D008959 5.4e-120 435.3 418 53.1
Cpa.g.sc64.54 Carica papaya HOM05D007089 ORTHO05D008959 9.3e-120 434.5 323 64.1
BolC5t30479H Brassica oleracea HOM05D007089 ORTHO05D008959 1.0e-118 431.0 417 52.5
ATR0733G253 Amborella trichopoda HOM05D007089 ORTHO05D008959 6.7e-118 428.3 419 51.1
AT1G19340 Arabidopsis thaliana HOM05D007089 ORTHO05D008959 6.7e-118 428.3 415 53.3
Thhalv10007768m.g Eutrema salsugineum HOM05D007089 ORTHO05D008959 1.1e-117 427.6 416 54.8
arahy.Tifrunner.gnm1.ann1.K9WZZ6 Arachis hypogaea HOM05D007089 ORTHO05D008959 1.1e-115 421.0 418 55.7
BcaB07g31960 Brassica carinata HOM05D007089 ORTHO05D008959 2.4e-112 409.8 418 51.4
unitig_8.g3115 Utricularia gibba HOM05D007089 ORTHO05D008959 7.1e-112 408.3 403 51.4
HPP92_020401 Vanilla planifolia HOM05D007089 ORTHO05D008959 4.6e-111 405.6 417 50.4
Phvul.001G016200 Phaseolus vulgaris HOM05D007089 ORTHO05D008959 3.9e-110 402.5 379 53.6
AUR62001387 Chenopodium quinoa HOM05D007089 ORTHO05D008959 3.2e-104 382.9 432 49.3
MBI16_g26378_MAGBIO Magnolia biondii HOM05D007089 ORTHO05D008959 1.8e-102 377.1 442 46.8
CsaV3_2G028500 Cucumis sativus L. HOM05D007089 ORTHO05D008959 1.5e-101 374.0 331 55.6
ECA246G5250 Erigeron canadensis HOM05D007089 ORTHO05D008959 4.3e-101 372.5 348 53.4
CARHR019930 Cardamine hirsuta HOM05D007089 ORTHO05D008959 5.7e-101 372.1 340 54.7
Lj5g0009638 Lotus japonicus HOM05D007089 ORTHO05D008959 2.4e-99 366.7 352 57.1
Os03g0198900 Oryza sativa ssp. japonica HOM05D007089 ORTHO05D008959 7.6e-98 361.7 418 46.4
EL10Ac7g18245 Beta vulgaris HOM05D007089 ORTHO05D008959 1.3e-97 360.9 435 46.9
Lsat_1_v5_gn_5_30021 Lactuca sativa HOM05D007089 ORTHO05D008959 2.7e-95 353.2 368 50.3
Zm00001eb007930 Zea mays HOM05D007089 ORTHO05D008959 8.2e-92 341.7 414 44.7
Mapoly0005s0290 Marchantia polymorpha HOM05D007089 ORTHO05D008959 1.4e-86 324.3 432 42.8
CDE02G1565 Ceratophyllum demersum HOM05D007089 ORTHO05D008959 6.3e-84 315.5 401 41.6
SEGI_17198 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 1.7e-81 307.4 428 40.4
SEGI_08195 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 1.2e-79 301.2 349 45.8
Pp3c10_21330 Physcomitrium patens HOM05D007089 ORTHO05D008959 1.3e-76 291.2 289 47.4
Actinidia29839 Actinidia chinensis HOM05D007089 ORTHO05D008959 1.4e-75 287.7 354 46.3
Actinidia38023 Actinidia chinensis HOM05D007089 ORTHO05D008959 2.2e-65 253.8 312 46.5
FAN27G0845 Fragaria x ananassa HOM05D007089 ORTHO05D008959 5.2e-62 242.7 165 81.2
BcaNung07258 Brassica carinata HOM05D000817 ORTHO05D008959 1.7e-57 227.6 187 58.8
Thecc.01G286100 Theobroma cacao HOM05D007089 ORTHO05D008959 1.6e-55 221.1 225 58.2
SMO358G0064 Selaginella moellendorffii HOM05D007089 ORTHO05D008959 4.7e-55 219.5 189 51.3
CBR_g34449 Chara braunii HOM05D007089 ORTHO05D008959 2.8e-47 193.7 402 29.1
MELO3C010924.2 Cucumis melo HOM05D007089 ORTHO05D008959 4.9e-44 183.0 233 44.6
AagrBONN_evm.TU.Sc2ySwM_228.1009 Anthoceros agrestis HOM05D007089 ORTHO05D008959 1.7e-41 174.5 223 42.2
CSS0043770 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 6.0e-26 122.9 160 45.0
Glyma.17G248801 Glycine max HOM05D007089 ORTHO05D008959 8.6e-25 119.0 86 62.8
Thecc.08G022600 Theobroma cacao HOM05D007089 ORTHO05D008959 5.8e-21 106.3 169 42.0
Cfa025491 Carpinus fangiana HOM05D007089 ORTHO05D008959 1.1e-16 92.0 242 29.3
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 7.6e-13 79.3 92 56.5
Sed0025576 Sechium edule HOM05D007089 ORTHO05D008959 9.9e-13 79.0 62 59.7
CDE01G0194 Ceratophyllum demersum HOM05D007089 ORTHO05D008959 3.0e-09 67.4 48 66.7
Prupe.1G388100 Prunus persica HOM05D000823 ORTHO05D000088 8.7e-09 65.9 51 64.7


User provided reference genes

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