Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 1.7e-128 462.6 229 100.0
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 1.6e-126 456.1 229 97.8
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 2.8e-126 455.3 229 97.4
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 3.6e-126 454.9 229 97.4
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.1e-125 453.4 229 96.9
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.4e-125 453.0 229 96.1
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 1.2e-124 449.9 229 95.6
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 1.5e-124 449.5 229 95.6
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 3.4e-124 448.4 229 95.2
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 4.4e-124 448.0 229 95.2
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 7.6e-124 447.2 229 94.8
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 9.9e-124 446.8 229 94.8
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 1.3e-123 446.4 229 94.8
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.7e-123 446.0 229 94.3
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 1.7e-123 446.0 229 94.8
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 3.8e-123 444.9 229 95.2
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 4.9e-123 444.5 229 93.4
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 4.9e-123 444.5 229 93.9
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 1.1e-122 443.4 227 93.8
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 1.1e-122 443.4 227 93.8
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 93.9
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 1.4e-122 443.0 229 93.9
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 1.9e-122 442.6 229 94.3
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 1.9e-122 442.6 229 93.9
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 1.9e-122 442.6 229 94.3
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 4.2e-122 441.4 229 93.9
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 4.2e-122 441.4 229 93.0
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 4.2e-122 441.4 229 93.0
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 5.4e-122 441.0 226 93.8
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 5.4e-122 441.0 226 93.8
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 7.1e-122 440.7 227 94.3
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 9.3e-122 440.3 229 94.8
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 9.3e-122 440.3 229 93.0
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 1.2e-121 439.9 229 93.0
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 1.2e-121 439.9 229 93.4
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 1.6e-121 439.5 227 92.5
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 2.1e-121 439.1 229 93.0
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.1e-121 439.1 226 93.4
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 2.1e-121 439.1 229 93.9
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 3.5e-121 438.3 229 92.6
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 3.5e-121 438.3 229 93.0
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 3.5e-121 438.3 229 92.6
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 4.6e-121 438.0 227 93.4
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 4.6e-121 438.0 229 92.6
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 6.0e-121 437.6 229 92.6
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 6.0e-121 437.6 227 93.4
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 7.8e-121 437.2 227 93.0
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 91.3
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 2.3e-120 435.6 228 92.5
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 2.3e-120 435.6 228 93.0
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 3.0e-120 435.3 229 93.0
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 6.6e-120 434.1 229 92.6
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.9e-119 432.6 229 91.7
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 4.3e-119 431.4 227 92.1
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.3e-118 429.9 227 91.2
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.3e-118 429.9 229 90.8
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 2.8e-118 428.7 229 91.3
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 2.8e-118 428.7 227 91.6
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 4.8e-118 427.9 227 91.6
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 1.1e-117 426.8 228 91.2
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 1.4e-117 426.4 229 89.5
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 1.8e-117 426.0 229 90.8
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 4.0e-117 424.9 220 92.7
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 5.3e-117 424.5 229 88.6
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 6.9e-117 424.1 229 89.5
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.2e-116 423.3 227 89.0
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 5.8e-116 421.0 227 90.3
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 9.9e-116 420.2 229 89.5
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 9.9e-116 420.2 229 90.4
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 2.2e-115 419.1 229 90.0
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 6.4e-115 417.5 229 89.5
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 1.4e-114 416.4 227 87.7
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 3.2e-114 415.2 227 88.5
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 3.2e-114 415.2 227 88.5
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 3.2e-114 415.2 227 88.5
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 3.2e-114 415.2 227 88.5
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 3.2e-114 415.2 227 88.5
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 4.2e-114 414.8 229 91.3
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 7.1e-114 414.1 227 88.1
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 9.3e-114 413.7 229 84.7
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 1.2e-113 413.3 227 87.7
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 2.7e-113 412.1 229 84.3
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 7.9e-113 410.6 227 86.8
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 3.9e-112 408.3 227 86.8
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 5.1e-112 407.9 226 85.4
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 6.7e-112 407.5 236 85.2
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 1.1e-111 406.8 227 85.9
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 1.5e-111 406.4 226 85.0
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 5.6e-111 404.4 227 84.6
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 7.4e-111 404.1 227 84.6
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 9.6e-111 403.7 227 84.6
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 2.8e-110 402.1 227 84.1
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 4.8e-110 401.4 227 84.6
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 8.1e-110 400.6 228 84.2
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 8.1e-110 400.6 254 79.1
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 1.1e-109 400.2 227 84.1
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 2.6e-108 395.6 202 95.0
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 5.8e-108 394.4 227 81.9
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 4.9e-107 391.3 204 93.1
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 1.6e-105 386.3 203 92.1
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 2.3e-104 382.5 229 83.0
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 3.3e-103 378.6 211 88.6
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 1.3e-102 376.7 227 78.0
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 2.1e-102 375.9 229 79.5
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 3.1e-101 372.1 190 96.8
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 5.3e-101 371.3 200 86.5
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.2e-100 370.2 229 75.1
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.2e-100 370.2 229 75.1
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 1.5e-100 369.8 200 90.5
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 2.0e-100 369.4 191 94.8
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 3.4e-100 368.6 190 94.2
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 1.0e-99 367.1 227 74.4
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 1.1e-98 363.6 233 79.4
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 3.2e-98 362.1 219 82.6
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 2.7e-97 359.0 250 74.8
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.3e-96 356.7 191 91.6
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 8.7e-96 354.0 185 95.1
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 8.7e-96 354.0 187 94.1
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 4.3e-95 351.7 227 75.3
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 2.2e-94 349.4 227 77.5
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 3.7e-94 348.6 185 91.9
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 2.2e-91 339.3 226 70.4
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 3.9e-88 328.6 226 71.7
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 2.0e-84 316.2 355 51.5
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 3.4e-84 315.5 162 94.4
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 4.5e-84 315.1 164 94.5
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.7e-75 286.6 160 85.6
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.4e-69 266.2 160 77.5
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 5.0e-59 231.9 120 91.7
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 2.7e-57 226.1 154 68.8
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.7e-57 226.1 131 80.2
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 4.6e-36 155.6 135 60.0
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.1e-28 130.2 69 89.9
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 4.4e-23 112.5 62 79.0
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 1.7e-19 100.5 124 50.8
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 5.1e-19 99.0 152 42.1
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 2.0e-15 87.0 81 55.6
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.0e-15 87.0 45 86.7
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.9e-13 80.5 52 69.2
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 2.1e-12 77.0 79 50.6
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 2.7e-12 76.6 49 75.5
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 2.5e-10 70.1 82 52.4
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 5.8e-07 58.9 26 100.0


User provided reference genes

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