Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 1.1e-113 413.3 203 100.0
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 6.3e-98 360.9 209 85.6
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 7.7e-96 354.0 209 85.6
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 1.2e-91 340.1 209 82.3
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 1.0e-84 317.0 206 75.2
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 1.4e-84 316.6 205 75.6
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 9.2e-81 303.9 210 71.0
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 7.8e-80 300.8 205 73.2
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 8.1e-77 290.8 205 69.8
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 1.4e-76 290.0 206 69.9
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 5.2e-76 288.1 204 70.1
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 6.8e-76 287.7 204 69.6
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 2.0e-75 286.2 195 72.3
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 2.0e-75 286.2 203 69.0
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 7.5e-75 284.3 203 68.0
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 1.3e-74 283.5 200 71.0
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 2.9e-74 282.3 205 67.8
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 4.9e-74 281.6 203 69.0
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 8.3e-74 280.8 202 66.8
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 9.2e-73 277.3 205 67.8
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 1.2e-72 276.9 205 67.8
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 1.2e-72 276.9 200 68.5
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 6.0e-72 274.6 206 66.0
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 7.8e-72 274.2 208 64.4
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 1.0e-71 273.9 200 67.5
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 3.9e-71 271.9 204 65.7
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 5.1e-71 271.6 210 65.7
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 5.1e-71 271.6 199 67.8
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 3.3e-70 268.9 207 65.2
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 5.6e-70 268.1 206 64.6
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 7.3e-70 267.7 198 67.7
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 2.1e-69 266.2 204 66.2
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 3.6e-69 265.4 206 61.2
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 3.6e-69 265.4 203 65.0
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 4.7e-69 265.0 205 65.9
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 8.1e-69 264.2 205 64.4
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.1e-68 263.8 203 66.0
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 6.8e-68 261.2 209 62.7
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 8.9e-68 260.8 198 67.2
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 1.2e-67 260.4 207 64.3
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 2.6e-67 259.2 192 65.1
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 3.4e-67 258.8 208 63.5
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 5.8e-67 258.1 204 64.7
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 7.6e-67 257.7 199 62.3
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 7.6e-67 257.7 200 61.5
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 1.3e-66 256.9 196 64.3
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 4.9e-66 255.0 196 61.7
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 6.4e-66 254.6 208 63.5
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 6.4e-66 254.6 208 63.5
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 6.4e-66 254.6 207 61.8
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 1.1e-65 253.8 204 63.2
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 2.4e-65 252.7 224 58.0
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 3.2e-65 252.3 198 66.2
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 3.2e-65 252.3 196 63.3
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 3.2e-65 252.3 210 59.5
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 5.4e-65 251.5 200 64.0
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 5.4e-65 251.5 206 62.6
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 7.1e-65 251.1 199 60.8
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 7.1e-65 251.1 221 58.4
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 7.1e-65 251.1 202 63.4
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 1.6e-64 250.0 196 61.7
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 1.6e-64 250.0 211 60.7
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 1.6e-64 250.0 217 61.3
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 2.7e-64 249.2 215 59.1
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 3.5e-64 248.8 196 61.2
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 3.5e-64 248.8 206 60.7
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 3.5e-64 248.8 208 61.5
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 6.0e-64 248.1 196 60.2
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 6.0e-64 248.1 196 60.2
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 6.0e-64 248.1 196 60.7
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 6.0e-64 248.1 196 62.8
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 6.0e-64 248.1 205 62.4
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 7.8e-64 247.7 193 61.7
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 7.8e-64 247.7 203 61.6
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 7.8e-64 247.7 208 62.0
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 1.7e-63 246.5 193 61.1
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 3.9e-63 245.4 196 61.7
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 3.9e-63 245.4 196 61.2
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 5.1e-63 245.0 195 61.5
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 6.6e-63 244.6 198 60.6
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 1.1e-62 243.8 183 66.7
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 1.1e-62 243.8 209 60.8
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 1.9e-62 243.0 190 61.1
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 3.3e-62 242.3 198 60.1
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 8.1e-61 237.7 200 59.5
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 8.1e-61 237.7 199 60.8
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 1.1e-60 237.3 196 60.7
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.1e-60 237.3 198 61.6
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 1.1e-60 237.3 199 60.8
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 3.4e-59 232.3 192 60.9
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 4.9e-58 228.4 222 55.9
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 2.1e-56 223.0 170 66.5
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 2.1e-56 223.0 164 68.9
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 6.0e-56 221.5 204 57.4
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 1.7e-55 219.9 195 56.4
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 6.9e-52 208.0 203 52.7
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 1.2e-51 207.2 184 57.6
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 3.4e-51 205.7 173 61.8
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 4.3e-46 188.7 170 60.0
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 5.6e-46 188.3 151 62.9
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 1.8e-44 183.3 151 62.9
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 2.9e-42 176.0 152 57.2
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 5.5e-41 171.8 117 70.1
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 1.2e-40 170.6 155 54.8
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 1.1e-38 164.1 229 42.8
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 1.9e-38 163.3 192 47.4
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 9.6e-38 161.0 190 48.9
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 1.6e-37 160.2 203 44.8
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 6.9e-36 154.8 115 67.8
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 7.6e-35 151.4 148 53.4
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 1.3e-34 150.6 130 54.6
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 8.2e-29 131.3 113 55.8
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 5.0e-26 122.1 121 53.7
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 9.3e-25 117.9 117 54.7
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.9e-22 110.2 124 50.8
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 1.7e-18 97.1 76 63.2
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 8.8e-15 84.7 50 76.0
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 9.7e-14 81.3 78 59.0
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 5.0e-10 68.9 148 34.5
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 3.2e-09 66.2 98 39.8
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 7.9e-08 61.6 73 37.0
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 1.4e-07 60.8 84 36.9
MCO15G478 Micromonas commoda HOM05D005776 ORTHO05D007333 1.1e-06 57.8 75 34.7
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 1.5e-06 57.4 68 47.1
CBR_g30695 Chara braunii HOM05D005776 ORTHO05D007333 3.3e-06 56.2 70 34.3


User provided reference genes

Program Settings