Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0299421 Rosa chinensis HOM05D006934 ORTHO05D008743 0.0e+00 1115.5 543 100.0
FvH4_2g41120 Fragaria vesca HOM05D006934 ORTHO05D008743 1.8e-280 968.8 518 91.7
FAN27G3133 Fragaria x ananassa HOM05D006934 ORTHO05D008743 2.6e-279 964.9 519 90.9
Prupe.1G393700 Prunus persica HOM05D006934 ORTHO05D008743 2.3e-251 872.1 509 80.9
MD15G1040400 Malus domestica HOM05D006934 ORTHO05D008743 2.3e-248 862.1 517 80.3
Haze_21418 Corylus avellana HOM05D006934 ORTHO05D008743 2.1e-241 839.0 518 77.2
Cfa013059 Carpinus fangiana HOM05D006934 ORTHO05D008743 2.4e-237 825.5 505 77.4
Dinv11656 Davidia involucrata HOM05D006934 ORTHO05D008743 1.5e-231 806.2 518 73.7
Atru.chr7.2565 Acer truncatum HOM05D006934 ORTHO05D008743 2.6e-231 805.4 507 76.5
QL02p018881 Quercus lobata HOM05D006934 ORTHO05D008743 7.6e-231 803.9 508 76.6
CSS0041678 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 4.9e-230 801.2 531 71.9
CSS0048576 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 4.9e-230 801.2 531 71.9
Cpa.g.sc127.37 Carica papaya HOM05D006934 ORTHO05D008743 1.4e-229 799.7 508 74.0
Hma1.2p1_0706F.1_g207020 Hydrangea macrophylla HOM05D006934 ORTHO05D008743 5.4e-229 797.7 516 73.6
Eucgr.C02612 Eucalyptus grandis HOM05D006934 ORTHO05D008743 3.9e-227 791.6 511 74.2
Manes.03G008700 Manihot esculenta HOM05D006934 ORTHO05D008743 3.9e-227 791.6 509 74.3
TWI34G0497 Tripterygium wilfordii HOM05D006934 ORTHO05D008743 5.1e-227 791.2 530 71.7
CANSAT25G0127 Cannabis sativa HOM05D006934 ORTHO05D008743 1.1e-226 790.0 511 72.8
Potri.018G018700 Populus trichocarpa HOM05D006934 ORTHO05D008743 1.1e-226 790.0 506 73.7
Rhsim02G0213000 Rhododendron simsii HOM05D006934 ORTHO05D008743 3.3e-226 788.5 510 73.9
Thecc.09G015800 Theobroma cacao HOM05D006934 ORTHO05D008743 1.6e-225 786.2 518 72.8
Sabra18G0021400 Salix brachista HOM05D006934 ORTHO05D008743 4.8e-225 784.6 522 72.4
GSVIVG01035967001 Vitis vinifera HOM05D006934 ORTHO05D008743 4.8e-225 784.6 519 73.6
Ciclev10008002m.g Citrus clementina HOM05D006934 ORTHO05D008743 6.9e-224 780.8 519 70.9
Actinidia10522 Actinidia chinensis HOM05D006934 ORTHO05D008743 2.6e-223 778.9 520 72.5
Lalb_Chr23g0268221 Lupinus albus HOM05D006934 ORTHO05D008743 2.6e-223 778.9 507 72.2
Psat5g033000 Pisum sativum HOM05D006934 ORTHO05D008743 1.7e-222 776.2 507 72.2
PGR044G1250 Punica granatum HOM05D006934 ORTHO05D008743 4.9e-222 774.6 493 74.8
Ca_15778_v3 Cicer arietinum L. HOM05D006934 ORTHO05D008743 1.1e-221 773.5 491 73.7
TPR.G1832 Trifolium pratense HOM05D006934 ORTHO05D008743 1.9e-221 772.7 496 73.4
Duzib168G1051 Durio zibethinus HOM05D006934 ORTHO05D008743 9.3e-221 770.4 518 71.0
TAR626G1595 Trochodendron aralioides HOM05D006934 ORTHO05D008743 2.1e-220 769.2 504 72.0
vmacro11241 Vaccinium macrocarpon HOM05D006934 ORTHO05D008743 4.6e-220 768.1 580 65.5
COL.COLO4_18949 Corchorus olitorius HOM05D006934 ORTHO05D008743 2.3e-219 765.8 518 70.3
Eucgr.C02525 Eucalyptus grandis HOM05D006934 ORTHO05D008743 2.3e-219 765.8 503 73.0
CAN.G21.49 Capsicum annuum HOM05D006934 ORTHO05D008743 5.1e-219 764.6 491 73.9
Aqoxy5G03587 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 6.6e-219 764.2 513 70.6
Lj1g0027414 Lotus japonicus HOM05D006934 ORTHO05D008743 8.7e-219 763.8 499 74.1
MSTRG.25834 Avicennia marina HOM05D006934 ORTHO05D008743 2.5e-218 762.3 490 72.9
CiPaw.07G230200 Carya illinoinensis HOM05D006934 ORTHO05D008743 2.5e-218 762.3 469 76.1
Eucgr.C02611 Eucalyptus grandis HOM05D006934 ORTHO05D008743 2.5e-218 762.3 503 72.6
Sopen08g022340 Solanum pennellii HOM05D006934 ORTHO05D008743 2.5e-218 762.3 489 74.0
Solyc08g068580.4 Solanum lycopersicum HOM05D006934 ORTHO05D008743 3.3e-218 761.9 489 73.8
Nitab4.5_0006202g0030 Nicotiana tabacum HOM05D006934 ORTHO05D008743 5.6e-218 761.1 511 70.8
Cc08_g06990 Coffea canephora HOM05D006934 ORTHO05D008743 3.6e-217 758.4 487 72.7
Medtr3g105980 Medicago truncatula HOM05D006934 ORTHO05D008743 4.8e-217 758.1 498 72.9
arahy.Tifrunner.gnm1.ann1.XZ9AUI Arachis hypogaea HOM05D006934 ORTHO05D008743 8.1e-217 757.3 506 72.1
Migut.A00351 Erythranthe guttata HOM05D006934 ORTHO05D008743 1.1e-216 756.9 494 72.1
EL10Ac2g02505 Beta vulgaris HOM05D006934 ORTHO05D008743 1.8e-216 756.1 520 70.4
AUR62032410 Chenopodium quinoa HOM05D006934 ORTHO05D008743 1.8e-216 756.1 521 70.4
HanXRQChr06g0176741 Helianthus annuus HOM05D006934 ORTHO05D008743 2.4e-216 755.7 514 69.5
AUR62024810 Chenopodium quinoa HOM05D006934 ORTHO05D008743 1.5e-215 753.1 521 70.2
Glyma.06G061500 Glycine max HOM05D006934 ORTHO05D008743 2.0e-215 752.7 509 70.5
Gorai.001G038100 Gossypium raimondii HOM05D006934 ORTHO05D008743 2.0e-215 752.7 518 68.9
Gohir.D07G036200 Gossypium hirsutum HOM05D006934 ORTHO05D008743 4.5e-215 751.5 518 68.9
MBI15_g19327_MAGBIO Magnolia biondii HOM05D006934 ORTHO05D008743 4.5e-215 751.5 482 72.4
Phvul.009G087000 Phaseolus vulgaris HOM05D006934 ORTHO05D008743 4.5e-215 751.5 513 70.6
VMungo1309G2247 Vigna mungo HOM05D006934 ORTHO05D008743 9.9e-215 750.4 496 72.0
Glyma.04G060900 Glycine max HOM05D006934 ORTHO05D008743 1.3e-214 750.0 515 70.3
Eucgr.C02526 Eucalyptus grandis HOM05D006934 ORTHO05D008743 8.4e-214 747.3 478 74.3
Lsat_1_v5_gn_8_82201 Lactuca sativa HOM05D006934 ORTHO05D008743 1.1e-213 746.9 515 69.3
ECA236G4849 Erigeron canadensis HOM05D006934 ORTHO05D008743 2.7e-212 742.3 487 71.3
ATR0739G024 Amborella trichopoda HOM05D006934 ORTHO05D008743 5.1e-211 738.0 502 70.1
Gorai.010G118800 Gossypium raimondii HOM05D006934 ORTHO05D008743 3.3e-210 735.3 518 68.1
Sp2g22420 Schrenkiella parvula HOM05D006934 ORTHO05D008743 2.1e-209 732.6 510 69.2
BcaNung03200 Brassica carinata HOM05D006934 ORTHO05D008743 2.8e-209 732.3 505 70.1
Hund02990 Selenicereus undatus HOM05D006934 ORTHO05D008743 4.8e-209 731.5 513 70.4
PGSC0003DMG400029048 Solanum tuberosum HOM05D006934 ORTHO05D008743 6.2e-209 731.1 473 73.4
CDE02G1998 Ceratophyllum demersum HOM05D006934 ORTHO05D008743 2.4e-208 729.2 489 70.1
Gohir.D06G103800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 3.1e-208 728.8 514 68.1
Sed0006653 Sechium edule HOM05D006934 ORTHO05D008743 5.3e-208 728.0 488 68.9
Lj7C734G21 Lonicera japonica HOM05D006934 ORTHO05D008743 9.0e-208 727.2 455 74.3
BraA06t26511Z Brassica rapa HOM05D006934 ORTHO05D008743 1.2e-207 726.9 507 69.0
THA.LOC104799020 Tarenaya hassleriana HOM05D006934 ORTHO05D008743 1.2e-207 726.9 526 67.5
C07p42720 Brassica napus HOM05D006934 ORTHO05D008743 3.8e-206 721.8 507 68.2
BcaNung02296 Brassica carinata HOM05D006934 ORTHO05D008743 4.9e-206 721.5 507 68.0
BolC7t44802H Brassica oleracea HOM05D006934 ORTHO05D008743 4.9e-206 721.5 507 68.0
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 3.2e-205 718.8 497 69.6
PSO017G3817 Papaver somniferum HOM05D006934 ORTHO05D008743 5.5e-205 718.0 503 68.4
AL6G36750 Arabidopsis lyrata HOM05D006934 ORTHO05D008743 4.6e-204 714.9 494 69.4
CsaV3_4G036540 Cucumis sativus L. HOM05D006934 ORTHO05D008743 2.3e-203 712.6 488 68.4
MELO3C016958.2 Cucumis melo HOM05D006934 ORTHO05D008743 1.9e-202 709.5 528 65.2
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 5.7e-202 708.0 487 69.6
HPP92_004696 Vanilla planifolia HOM05D006934 ORTHO05D008743 9.6e-202 707.2 496 69.0
Ah.12g060980 Amaranthus hybridus HOM05D006934 ORTHO05D008743 2.1e-201 706.1 461 73.5
PSO170G6733 Papaver somniferum HOM05D006934 ORTHO05D008743 2.8e-201 705.7 503 67.6
Aa31LG11G4330 Aethionema arabicum HOM05D006934 ORTHO05D008743 4.0e-200 701.8 500 68.2
A06p35860 Brassica napus HOM05D006934 ORTHO05D008743 5.3e-200 701.4 554 63.5
ClCG05G016280 Citrullus lanatus HOM05D006934 ORTHO05D008743 2.0e-199 699.5 515 65.6
Os06g0649900 Oryza sativa ssp. japonica HOM05D006934 ORTHO05D008743 5.0e-198 694.9 479 67.4
Nn2g12390 Nelumbo nucifera HOM05D006934 ORTHO05D008743 6.3e-193 677.9 520 65.2
Aqoxy2G03820 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 3.1e-192 675.6 491 65.6
SEGI_09290 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 1.0e-190 670.6 502 63.9
BcaNung06716 Brassica carinata HOM05D006934 ORTHO05D008743 3.2e-189 665.6 484 67.1
arahy.Tifrunner.gnm1.ann1.G1SIKM Arachis hypogaea HOM05D006934 ORTHO05D008743 3.7e-177 625.5 506 62.8
Pp3c3_35450 Physcomitrium patens HOM05D006934 ORTHO05D008743 3.0e-163 579.3 477 56.6
Thhalv10004366m.g Eutrema salsugineum HOM05D006934 ORTHO05D008743 2.6e-162 576.2 383 71.3
CARHR188390 Cardamine hirsuta HOM05D006934 ORTHO05D008743 4.4e-154 548.9 375 70.4
Peaxi162Scf00822g00212 Petunia axillaris HOM05D006934 ORTHO05D008743 4.4e-146 522.3 347 69.2
Sc09g0010640 Simmondsia chinensis HOM05D006934 ORTHO05D008743 3.9e-142 509.2 360 67.5
Nn8g39897 Nelumbo nucifera HOM05D006934 ORTHO05D008743 6.0e-135 485.3 356 65.7
Eucgr.C02635 Eucalyptus grandis HOM05D006934 ORTHO05D008743 2.6e-122 443.4 504 49.4
Gohir.A06G101800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 5.1e-118 429.1 320 63.8
Gohir.A07G032950 Gossypium hirsutum HOM05D006934 ORTHO05D008743 5.1e-118 429.1 311 64.6
Zm00001eb275030 Zea mays HOM05D006934 ORTHO05D008743 4.5e-90 336.3 238 62.2
Zm00001eb334470 Zea mays HOM05D006934 ORTHO05D008743 2.9e-81 307.0 213 62.4
QL02p018870 Quercus lobata HOM05D006934 ORTHO05D008743 3.1e-75 287.0 183 73.8
Gohir.A06G101702 Gossypium hirsutum HOM05D006934 ORTHO05D008743 4.8e-68 263.1 179 72.6
SGA_v2.0_scaffold22G09909 Striga asiatica HOM05D006934 ORTHO05D008743 1.9e-56 224.6 150 73.3
Zm00001eb337170 Zea mays HOM05D006934 ORTHO05D008743 1.1e-53 215.3 148 62.2
Lsat_1_v5_gn_5_171641 Lactuca sativa HOM05D006934 ORTHO05D008743 2.8e-23 114.4 104 58.7
Cfa012861 Carpinus fangiana HOM05D006934 ORTHO05D008743 1.1e-16 92.4 53 75.5
Lsat_1_v5_gn_2_108800 Lactuca sativa HOM05D006934 ORTHO05D003550 2.6e-13 81.3 100 46.0
SEGI_28803 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 2.7e-10 71.2 89 42.7


User provided reference genes

Program Settings