Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 3.0e-63 245.0 120 100.0
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.6e-43 178.7 121 77.7
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 5.9e-43 177.6 121 78.5
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 1.1e-36 156.8 97 77.3
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 4.5e-35 151.4 98 77.6
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 7.7e-35 150.6 101 69.3
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.7e-34 149.4 99 74.7
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 5.0e-34 147.9 96 71.9
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 8.5e-34 147.1 96 72.9
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 1.4e-33 146.4 98 74.5
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 3.2e-33 145.2 100 71.0
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 4.2e-33 144.8 97 72.2
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 7.2e-33 144.1 98 72.4
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 2.7e-32 142.1 100 67.0
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 2.7e-32 142.1 98 69.4
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 2.7e-32 142.1 98 70.4
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 3.6e-32 141.7 96 68.8
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 3.6e-32 141.7 98 71.4
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 4.7e-32 141.4 98 72.4
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 4.7e-32 141.4 98 72.4
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 8.0e-32 140.6 100 66.0
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 1.8e-31 139.4 95 70.5
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 2.3e-31 139.0 106 64.2
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 2.3e-31 139.0 97 69.1
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 3.0e-31 138.7 98 67.3
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 3.9e-31 138.3 97 69.1
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 3.9e-31 138.3 98 68.4
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 5.2e-31 137.9 113 63.7
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 5.2e-31 137.9 105 65.7
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 8.8e-31 137.1 98 65.3
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 8.8e-31 137.1 97 67.0
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 3.3e-30 135.2 103 66.0
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 5.7e-30 134.4 98 69.4
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 7.4e-30 134.0 82 79.3
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 7.4e-30 134.0 95 68.4
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 7.4e-30 134.0 95 68.4
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 7.4e-30 134.0 98 63.3
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 1.7e-29 132.9 100 64.0
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 2.8e-29 132.1 103 64.1
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 3.7e-29 131.7 98 65.3
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 4.8e-29 131.3 100 65.0
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 8.2e-29 130.6 95 64.2
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 8.2e-29 130.6 95 67.4
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 8.2e-29 130.6 103 64.1
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.4e-28 129.8 97 64.9
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.4e-28 129.8 98 66.3
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 1.4e-28 129.8 96 63.5
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 3.1e-28 128.6 98 66.3
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 3.1e-28 128.6 98 66.3
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 3.1e-28 128.6 98 66.3
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 3.1e-28 128.6 100 62.0
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 4.1e-28 128.3 100 64.0
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 4.1e-28 128.3 98 64.3
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 9.1e-28 127.1 97 66.0
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 9.1e-28 127.1 98 66.3
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.6e-27 126.3 98 64.3
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 2.0e-27 125.9 98 66.3
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 2.0e-27 125.9 95 64.2
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 3.5e-27 125.2 98 64.3
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 4.5e-27 124.8 94 67.0
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 4.5e-27 124.8 98 65.3
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 4.5e-27 124.8 98 66.3
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 5.9e-27 124.4 98 64.3
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 5.9e-27 124.4 104 61.5
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 1.0e-26 123.6 98 65.3
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 1.0e-26 123.6 98 65.3
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 1.0e-26 123.6 98 65.3
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 1.0e-26 123.6 98 65.3
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 1.7e-26 122.9 98 64.3
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.7e-26 122.9 101 62.4
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 5.0e-26 121.3 100 62.0
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 6.5e-26 120.9 100 63.0
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 6.5e-26 120.9 106 58.5
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 1.5e-25 119.8 105 61.0
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 1.9e-25 119.4 103 59.2
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 3.2e-25 118.6 94 59.6
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 9.4e-25 117.1 103 57.3
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 9.4e-25 117.1 95 60.0
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 1.6e-24 116.3 87 65.5
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 2.1e-24 115.9 89 64.0
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 8.0e-24 114.0 90 63.3
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 8.0e-24 114.0 92 64.1
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 8.0e-24 114.0 89 62.9
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 6.7e-23 110.9 98 58.2
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 6.7e-23 110.9 98 58.2
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 6.7e-23 110.9 100 59.0
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 8.8e-23 110.5 92 63.0
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 2.0e-22 109.4 100 58.0
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 3.3e-22 108.6 98 59.2
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 1.8e-20 102.8 94 57.4
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.6e-19 99.8 96 58.3
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 4.5e-19 98.2 108 50.0
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 5.5e-17 91.3 84 54.8
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 3.6e-16 88.6 78 55.1
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 3.6e-16 88.6 78 55.1
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 4.7e-16 88.2 75 57.3
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 4.7e-16 88.2 94 51.1
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 6.1e-16 87.8 106 46.2
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 1.8e-15 86.3 97 47.4
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 6.8e-15 84.3 84 52.4
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 8.8e-15 84.0 83 51.8
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 1.2e-14 83.6 83 53.0
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 2.0e-14 82.8 74 58.1
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 4.4e-14 81.6 87 52.9
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 7.5e-14 80.9 83 50.6
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 9.8e-14 80.5 83 50.6
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 1.8e-12 76.3 73 53.4
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 2.4e-12 75.9 84 51.2
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 5.4e-12 74.7 77 50.6
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 1.2e-11 73.6 68 54.4
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 1.6e-11 73.2 71 56.3
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 2.0e-11 72.8 85 45.9
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 3.5e-11 72.0 78 50.0
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 3.5e-11 72.0 78 50.0
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 5.9e-11 71.2 81 45.7
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 7.7e-11 70.9 80 48.8
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 7.7e-11 70.9 80 48.8
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.0e-10 70.5 78 47.4
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 1.3e-10 70.1 68 51.5
AagrBONN_evm.TU.Sc2ySwM_368.420 Anthoceros agrestis HOM05D003524 ORTHO05D003988 1.7e-10 69.7 45 68.9
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.7e-10 69.7 60 55.0
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 2.3e-10 69.3 77 46.8
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 2.9e-10 68.9 74 48.6
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 3.8e-10 68.6 60 53.3
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 3.8e-10 68.6 60 53.3
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 3.8e-10 68.6 68 51.5
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 5.0e-10 68.2 70 50.0
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 1.1e-09 67.0 97 44.3
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 1.1e-09 67.0 67 49.3
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 2.5e-09 65.9 86 45.3
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 2.5e-09 65.9 67 50.7
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 3.3e-09 65.5 63 50.8
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 3.3e-09 65.5 60 56.7
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 5.5e-09 64.7 73 46.6
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 5.5e-09 64.7 75 45.3
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 7.2e-09 64.3 97 42.3
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 7.2e-09 64.3 60 50.0
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 1.6e-08 63.2 70 48.6
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 2.1e-08 62.8 59 50.8
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 2.8e-08 62.4 60 51.7
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 3.6e-08 62.0 65 47.7
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 4.7e-08 61.6 60 48.3
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 6.1e-08 61.2 60 53.3
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 6.1e-08 61.2 60 50.0
Mapoly0006s0148 Marchantia polymorpha HOM05D003524 ORTHO05D003988 6.1e-08 61.2 67 47.8
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 6.1e-08 61.2 60 50.0
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 6.1e-08 61.2 72 47.2
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 6.1e-08 61.2 80 45.0
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.4e-07 60.1 83 41.0
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.4e-07 60.1 83 41.0
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.4e-07 60.1 83 41.0
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 1.4e-07 60.1 77 37.7
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.8e-07 59.7 78 43.6
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.3e-07 59.3 60 48.3
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 3.0e-07 58.9 60 51.7
Nn2g14054 Nelumbo nucifera HOM05D003524 ORTHO05D003988 4.0e-07 58.5 97 42.3
Nn2g14056 Nelumbo nucifera HOM05D003524 ORTHO05D003988 4.0e-07 58.5 97 42.3
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 6.8e-07 57.8 66 47.0
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 1.5e-06 56.6 60 46.7
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.0e-06 56.2 60 50.0
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 9.8e-06 53.9 61 45.9


User provided reference genes

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