Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 6.0e-182 642.5 829 100.0
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 6.8e-133 479.6 805 91.1
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 1.0e-128 465.7 805 90.6
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 4.7e-126 456.8 805 78.9
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 1.0e-96 359.4 829 82.1
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 3.0e-96 357.8 827 81.4
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 4.4e-92 344.0 240 77.9
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 2.8e-78 298.1 777 80.4
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 9.0e-77 293.1 157 89.2
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 1.2e-76 292.7 782 81.3
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 1.3e-75 289.3 783 80.3
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 2.9e-75 288.1 777 79.9
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 8.4e-75 286.6 779 81.0
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 1.4e-74 285.8 783 80.6
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 2.4e-74 285.0 784 80.4
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 2.1e-73 282.0 740 83.2
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 2.5e-71 275.0 216 66.2
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 9.6e-71 273.1 779 56.6
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 1.3e-70 272.7 777 80.2
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 8.1e-70 270.0 735 83.5
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 1.4e-69 269.2 777 79.0
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 1.4e-69 269.2 782 79.0
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 2.4e-69 268.5 216 60.6
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 3.1e-69 268.1 771 80.0
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 1.2e-68 266.2 771 79.8
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 1.5e-68 265.8 214 63.1
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 3.4e-68 264.6 785 77.7
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 3.4e-68 264.6 214 63.1
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 4.5e-68 264.2 774 79.1
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.6e-68 263.5 210 64.8
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 7.6e-68 263.5 785 77.6
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 9.9e-68 263.1 782 78.5
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 2.9e-67 261.5 781 78.7
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 1.4e-66 259.2 216 61.6
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 9.3e-66 256.5 207 64.3
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 9.3e-66 256.5 216 61.1
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 1.6e-65 255.8 215 61.4
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 2.1e-65 255.4 782 78.1
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 2.1e-65 255.4 783 78.4
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 1.8e-64 252.3 785 76.8
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 3.3e-63 248.1 216 61.1
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 9.6e-63 246.5 214 59.8
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 1.3e-62 246.1 219 57.1
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 1.3e-62 246.1 209 62.2
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 3.7e-62 244.6 217 57.6
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 6.2e-62 243.8 781 76.7
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 1.4e-61 242.7 783 77.1
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.8e-61 242.3 181 69.6
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 3.1e-61 241.5 739 80.0
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 3.1e-61 241.5 788 77.5
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 6.9e-61 240.4 201 59.2
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 4.5e-60 237.7 214 57.9
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 5.8e-60 237.3 197 62.9
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.6e-60 236.9 152 75.0
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.6e-60 236.9 152 75.0
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 1.3e-59 236.1 212 56.6
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 1.3e-59 236.1 211 58.8
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 1.7e-59 235.7 202 58.9
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 2.2e-59 235.3 262 50.4
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 2.9e-59 235.0 173 67.1
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 2.9e-59 235.0 173 67.1
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 3.8e-59 234.6 216 57.9
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 3.8e-59 234.6 179 65.4
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.9e-58 232.3 206 58.7
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 2.5e-58 231.9 215 57.2
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 2.5e-58 231.9 261 49.0
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 3.2e-58 231.5 210 56.7
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 5.5e-58 230.7 168 66.7
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 2.3e-56 225.3 199 56.8
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 3.0e-56 224.9 173 64.7
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 2.5e-55 221.9 781 76.6
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 1.6e-54 219.2 216 53.2
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 2.1e-54 218.8 211 55.9
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 6.3e-54 217.2 201 58.7
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.2e-54 216.9 181 64.6
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 4.1e-53 214.5 175 61.7
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.2e-52 213.0 211 56.4
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 1.2e-52 213.0 182 58.2
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.0e-52 212.2 199 58.3
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.0e-51 209.9 213 55.9
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 5.0e-51 207.6 169 60.9
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 1.0e-48 199.9 152 57.9
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 2.3e-48 198.7 155 59.4
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 5.1e-48 197.6 154 58.4
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 9.7e-47 193.4 222 50.0
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 1.6e-46 192.6 693 83.0
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 4.8e-46 191.0 681 83.6
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 2.6e-44 185.3 686 83.8
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 4.5e-44 184.5 127 72.4
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 7.7e-44 183.7 157 54.1
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 3.8e-43 181.4 147 59.9
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 6.5e-43 180.6 162 59.3
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 1.1e-42 179.9 139 60.4
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.1e-41 175.6 138 65.2
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 6.1e-41 174.1 145 57.2
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.1e-41 174.1 181 55.8
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 3.9e-40 171.4 142 57.7
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 3.9e-40 171.4 142 57.7
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 5.1e-40 171.0 145 55.2
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 2.0e-39 169.1 167 52.1
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 5.7e-39 167.5 182 48.4
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 2.2e-38 165.6 165 53.9
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 2.2e-38 165.6 182 46.7
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 4.8e-38 164.5 181 48.1
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 1.8e-37 162.5 133 57.9
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 1.8e-37 162.5 114 68.4
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 2.4e-37 162.2 144 54.2
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 2.0e-36 159.1 132 56.8
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 1.7e-35 156.0 168 49.4
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.9e-35 155.2 152 49.3
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 1.1e-34 153.3 150 45.3
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 7.2e-34 150.6 133 55.6
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 3.6e-33 148.3 144 52.1
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 2.3e-32 145.6 152 48.7
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 2.3e-32 145.6 134 53.7
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 2.3e-32 145.6 133 54.1
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 3.9e-32 144.8 136 52.2
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 7.4e-31 140.6 129 55.0
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 2.2e-30 139.0 135 49.6
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 7.0e-29 134.0 167 43.7
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.5e-28 131.7 115 53.9
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.9e-27 128.6 144 47.2
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.6e-25 122.9 169 41.4
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 2.7e-25 122.1 130 51.5
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 1.4e-24 119.8 172 41.9
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 5.2e-24 117.9 168 42.9
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 1.1e-21 110.2 142 38.7
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.1e-18 100.1 124 41.9
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 1.4e-13 83.2 117 43.6
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 5.9e-12 77.8 46 82.6
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 6.1e-09 67.8 166 27.7
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 1.4e-08 66.6 166 26.5
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 3.0e-08 65.5 167 27.5
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 8.8e-08 63.9 165 26.7
MBI04_g06998_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 2.6e-07 62.4 153 25.5
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 2.6e-07 62.4 111 33.3
PGR083G0367 Punica granatum HOM05D002453 ORTHO05D002107 3.4e-07 62.0 173 23.7
Os01g0559500 Oryza sativa ssp. japonica HOM05D007322 ORTHO05D009029 5.7e-07 61.2 142 28.2
Ah.11g048530 Amaranthus hybridus HOM05D002453 ORTHO05D002107 7.5e-07 60.8 166 24.7
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 7.5e-07 60.8 173 24.9
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 7.5e-07 60.8 173 24.9
COL.COLO4_24857 Corchorus olitorius HOM05D000001 ORTHO05D000003 9.8e-07 60.5 155 23.9
Lsat_1_v5_gn_1_13300 Lactuca sativa HOM05D002453 ORTHO05D002107 9.8e-07 60.5 171 25.7
SalBow2G2076 Salvia bowleyana HOM05D003056 ORTHO05D003422 9.8e-07 60.5 113 32.7
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 1.7e-06 59.7 168 23.2
Cc02_g19560 Coffea canephora HOM05D003056 ORTHO05D003422 2.2e-06 59.3 116 31.9
TPR.G9250 Trifolium pratense HOM05D002453 ORTHO05D002107 2.2e-06 59.3 165 24.2
VMungo0647G1609 Vigna mungo HOM05D002453 ORTHO05D002107 2.2e-06 59.3 165 24.8
ClCG03G013360 Citrullus lanatus HOM05D000001 ORTHO05D000003 2.8e-06 58.9 153 25.5
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 2.8e-06 58.9 150 24.7
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 4.9e-06 58.2 170 23.5
AUR62021699 Chenopodium quinoa HOM05D002453 ORTHO05D002107 4.9e-06 58.2 166 25.9
CsaV3_1G042690 Cucumis sativus L. HOM05D000001 ORTHO05D000003 4.9e-06 58.2 153 24.8
Thecc.02G112900 Theobroma cacao HOM05D003056 ORTHO05D003422 4.9e-06 58.2 113 33.6
BcaC08g46987 Brassica carinata HOM05D002453 ORTHO05D002107 6.3e-06 57.8 165 23.0
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 6.3e-06 57.8 182 25.8
TAR633G2366 Trochodendron aralioides HOM05D000001 ORTHO05D000003 6.3e-06 57.8 155 23.2
MELO3C015205.2 Cucumis melo HOM05D000001 ORTHO05D000003 8.3e-06 57.4 153 24.2
FvH4_1g03350 Fragaria vesca HOM05D000001 ORTHO05D010414 8.3e-06 57.4 153 26.1
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 8.3e-06 57.4 165 24.8
Hma1.2p1_1174F.1_g263900 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 8.3e-06 57.4 113 31.9
MBI04_g06997_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 8.3e-06 57.4 153 23.5
Phvul.008G197400 Phaseolus vulgaris HOM05D002453 ORTHO05D002107 8.3e-06 57.4 165 24.8
Psat4g051440 Pisum sativum HOM05D002453 ORTHO05D002107 8.3e-06 57.4 165 24.2
RcHm_v2.0_Chr6g0254201 Rosa chinensis HOM05D003056 ORTHO05D003422 8.3e-06 57.4 140 30.0
Sed0003087 Sechium edule HOM05D000001 ORTHO05D000003 8.3e-06 57.4 153 24.8


User provided reference genes

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