Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 1.6e-100 369.4 181 100.0
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 8.2e-97 357.1 181 96.1
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.4e-96 355.5 181 95.6
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.3e-96 354.4 181 94.5
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 3.2e-93 345.1 181 93.4
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 1.6e-92 342.8 181 91.2
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.7e-92 342.0 179 91.6
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 2.7e-92 342.0 179 91.6
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 3.5e-92 341.7 181 90.6
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 7.9e-92 340.5 181 91.7
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.0e-91 340.1 181 92.8
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.0e-91 338.6 179 91.1
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.0e-91 338.6 179 91.6
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 3.0e-91 338.6 181 91.2
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 3.0e-91 338.6 179 91.6
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 3.0e-91 338.6 179 93.3
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 3.9e-91 338.2 181 91.2
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 5.1e-91 337.8 181 90.6
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.1e-90 336.7 181 90.6
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.9e-90 335.9 179 90.5
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.5e-90 335.5 181 89.0
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 3.3e-90 335.1 181 89.0
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 4.8e-89 331.3 181 89.0
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 4.8e-89 331.3 181 90.1
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 6.3e-89 330.9 181 88.4
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 6.3e-89 330.9 174 93.7
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 1.4e-88 329.7 174 93.1
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 1.4e-88 329.7 181 89.5
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.8e-88 329.3 181 88.4
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 2.4e-88 328.9 181 89.5
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 6.9e-88 327.4 181 89.0
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 9.0e-88 327.0 179 86.6
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 1.2e-87 326.6 182 88.5
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 3.4e-87 325.1 180 88.3
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 3.4e-87 325.1 181 87.8
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 4.5e-87 324.7 181 85.1
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 1.0e-86 323.6 176 88.1
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 1.3e-86 323.2 181 86.2
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.7e-86 322.8 175 91.4
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 2.2e-86 322.4 181 87.3
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 2.2e-86 322.4 180 88.9
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.9e-86 322.0 181 86.7
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 3.8e-86 321.6 179 84.9
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 3.8e-86 321.6 181 85.1
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 5.0e-86 321.2 181 86.2
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 1.1e-85 320.1 176 88.1
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 1.1e-85 320.1 176 88.1
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 2.5e-85 318.9 180 87.8
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 3.2e-85 318.5 181 86.2
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 3.2e-85 318.5 181 86.7
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 3.2e-85 318.5 182 84.1
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 4.2e-85 318.2 181 85.1
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 5.5e-85 317.8 167 92.2
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 9.4e-85 317.0 176 87.5
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.6e-84 316.2 181 85.1
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.6e-84 316.2 181 85.1
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 2.1e-84 315.8 168 91.7
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 2.7e-84 315.5 176 85.8
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 2.7e-84 315.5 181 82.3
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 2.7e-84 315.5 203 79.3
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 4.6e-84 314.7 181 81.8
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 4.6e-84 314.7 176 86.9
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 1.4e-83 313.2 175 86.3
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 3.0e-83 312.0 180 86.1
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 3.9e-83 311.6 224 73.7
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 5.1e-83 311.2 181 86.2
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 6.7e-83 310.8 181 84.0
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 8.8e-83 310.5 170 89.4
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 1.1e-82 310.1 176 83.5
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 2.5e-82 308.9 178 86.0
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 3.3e-82 308.5 180 85.0
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 5.7e-82 307.8 178 85.4
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 5.7e-82 307.8 178 86.0
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 5.7e-82 307.8 181 80.7
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 9.7e-82 307.0 175 84.0
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 9.7e-82 307.0 181 81.2
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 9.7e-82 307.0 170 85.9
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 9.7e-82 307.0 183 83.6
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.3e-81 306.6 181 81.8
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.3e-81 306.6 181 80.7
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 1.7e-81 306.2 181 80.1
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.7e-81 306.2 181 80.7
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.7e-81 306.2 161 93.8
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 2.8e-81 305.4 178 84.8
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 2.8e-81 305.4 170 85.3
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 2.8e-81 305.4 181 80.1
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 2.8e-81 305.4 181 81.8
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 3.7e-81 305.1 181 80.7
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 3.7e-81 305.1 181 80.7
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 4.8e-81 304.7 181 80.1
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 4.8e-81 304.7 181 79.6
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 6.3e-81 304.3 182 80.2
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 6.3e-81 304.3 170 84.7
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 1.1e-80 303.5 181 79.0
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 1.4e-80 303.1 181 80.1
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 1.4e-80 303.1 181 80.1
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 1.8e-80 302.8 177 85.9
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 1.8e-80 302.8 181 77.9
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 1.8e-80 302.8 169 85.2
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 3.1e-80 302.0 177 83.1
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 4.1e-80 301.6 181 80.1
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 5.3e-80 301.2 182 79.7
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 6.9e-80 300.8 182 79.7
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 6.9e-80 300.8 168 88.7
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 1.5e-79 299.7 182 79.1
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 1.5e-79 299.7 182 79.1
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 2.0e-79 299.3 182 79.1
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 5.9e-79 297.7 181 80.1
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.7e-78 296.2 169 84.6
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 3.8e-78 295.0 174 80.5
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 5.0e-78 294.7 183 81.4
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 5.0e-78 294.7 183 81.4
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 7.2e-77 290.8 168 85.1
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.2e-76 290.0 181 77.9
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 2.1e-76 289.3 168 81.5
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 3.6e-76 288.5 178 81.5
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 3.6e-76 288.5 181 79.6
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 7.9e-76 287.3 181 80.1
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 1.0e-75 287.0 180 80.0
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 1.8e-75 286.2 168 80.4
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 1.5e-74 283.1 168 80.4
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 4.4e-74 281.6 169 79.9
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 9.7e-74 280.4 168 81.5
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 3.1e-72 275.4 167 77.2
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 5.3e-72 274.6 258 59.3
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 5.9e-71 271.2 182 73.1
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 6.5e-70 267.7 150 88.0
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 1.9e-69 266.2 180 71.7
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 3.1e-64 248.8 176 68.8
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 3.1e-64 248.8 176 68.8
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 4.1e-64 248.4 148 82.4
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.3e-62 243.4 181 71.3
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 3.8e-62 241.9 175 66.3
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 2.3e-59 232.6 174 65.5
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 1.1e-48 197.2 134 73.1
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 5.4e-48 194.9 172 55.8
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 4.5e-47 191.8 172 61.6
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 4.4e-42 175.3 100 87.0
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.3e-37 159.1 102 79.4
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 8.0e-36 154.5 116 69.8
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.4e-32 143.7 80 87.5
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.0e-30 137.5 178 42.1
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 3.3e-29 132.5 179 40.8
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 7.3e-29 131.3 69 89.9
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 8.9e-27 124.4 75 81.3
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 8.9e-27 124.4 75 81.3
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.6e-23 113.6 57 91.2
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 1.6e-23 113.6 100 61.0
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.5e-21 106.3 54 92.6
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 9.5e-21 104.4 209 40.2
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 1.1e-19 100.9 83 66.3
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 4.4e-18 95.5 62 71.0
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 7.5e-18 94.7 165 35.8
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 2.4e-16 89.7 165 32.1
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 8.6e-14 81.3 90 50.0
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 1.4e-11 73.9 88 48.9
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 3.1e-11 72.8 37 91.9
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 2.6e-10 69.7 45 73.3
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 3.4e-10 69.3 51 68.6
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 4.4e-10 68.9 38 89.5
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 9.9e-10 67.8 55 63.6
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 4.9e-09 65.5 50 66.0
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 4.9e-09 65.5 42 76.2
MD03G1162600 Malus domestica HOM05D004383 ORTHO05D005050 1.4e-08 63.9 43 72.1
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 5.4e-08 62.0 42 69.0
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 2.7e-07 59.7 38 68.4
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 2.7e-07 59.7 38 68.4


User provided reference genes

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