Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0299191 Rosa chinensis HOM05D006886 ORTHO05D008494 3.8e-79 298.1 152 100.0
FAN27G2382 Fragaria x ananassa HOM05D006886 ORTHO05D008494 1.1e-62 243.4 128 96.1
MD08G1052100 Malus domestica HOM05D006886 ORTHO05D008494 6.1e-61 237.7 151 80.8
MD15G1043400 Malus domestica HOM05D006886 ORTHO05D008494 1.9e-59 232.6 146 80.1
Prupe.1G396800 Prunus persica HOM05D006886 ORTHO05D008494 3.1e-57 225.3 124 88.7
Cfa013010 Carpinus fangiana HOM05D006886 ORTHO05D008494 1.3e-55 219.9 152 73.0
FvH4_2g41341 Fragaria vesca HOM05D006886 ORTHO05D008494 1.7e-55 219.5 118 94.9
COL.COLO4_18973 Corchorus olitorius HOM05D006886 ORTHO05D008494 2.2e-55 219.2 152 73.0
FAN15G0524 Fragaria x ananassa HOM05D006886 ORTHO05D008494 6.5e-55 217.6 115 95.7
CiPaw.07G233000 Carya illinoinensis HOM05D006886 ORTHO05D008494 1.1e-54 216.9 150 72.0
CANSAT25G2371 Cannabis sativa HOM05D006886 ORTHO05D008494 4.2e-54 214.9 150 71.3
QL02p018037 Quercus lobata HOM05D006886 ORTHO05D008494 5.5e-54 214.5 147 73.5
Haze_21375 Corylus avellana HOM05D006886 ORTHO05D008494 2.1e-53 212.6 149 71.1
Duzib168G1824 Durio zibethinus HOM05D006886 ORTHO05D008494 2.1e-53 212.6 151 70.9
Duzib187G0928 Durio zibethinus HOM05D006886 ORTHO05D008494 5.1e-52 208.0 151 69.5
Manes.16G132100 Manihot esculenta HOM05D006886 ORTHO05D008494 5.1e-52 208.0 146 70.5
Actinidia22280 Actinidia chinensis HOM05D006886 ORTHO05D008494 8.8e-52 207.2 150 68.0
Gohir.A07G033700 Gossypium hirsutum HOM05D006886 ORTHO05D008494 3.3e-51 205.3 151 68.9
Dinv03403 Davidia involucrata HOM05D006886 ORTHO05D008494 1.3e-50 203.4 149 68.5
Lj5g0011023 Lotus japonicus HOM05D006886 ORTHO05D008494 1.3e-50 203.4 153 67.3
Potri.018G016300 Populus trichocarpa HOM05D006886 ORTHO05D008494 4.8e-50 201.4 149 66.4
Cpa.g.sc148.45 Carica papaya HOM05D006886 ORTHO05D008494 1.1e-49 200.3 151 64.9
TPR.G38843 Trifolium pratense HOM05D006886 ORTHO05D008494 1.8e-49 199.5 153 66.7
Glyma.17G221700 Glycine max HOM05D006886 ORTHO05D008494 2.4e-49 199.1 153 66.0
Rhsim02G0217500 Rhododendron simsii HOM05D006886 ORTHO05D008494 2.4e-49 199.1 146 66.4
Glyma.14G104300 Glycine max HOM05D006886 ORTHO05D008494 5.3e-49 198.0 153 65.4
Phvul.001G042700 Phaseolus vulgaris HOM05D006886 ORTHO05D008494 1.5e-48 196.4 153 64.1
Lsat_1_v5_gn_3_22560 Lactuca sativa HOM05D006886 ORTHO05D008494 2.6e-48 195.7 144 65.3
Medtr1g013640 Medicago truncatula HOM05D006886 ORTHO05D008494 3.4e-48 195.3 153 66.7
Sabra18G0019800 Salix brachista HOM05D006886 ORTHO05D008494 7.7e-48 194.1 159 62.9
Lj7A737T48 Lonicera japonica HOM05D006886 ORTHO05D008494 2.2e-47 192.6 152 63.8
Ciclev10010834m.g Citrus clementina HOM05D006886 ORTHO05D008494 3.8e-47 191.8 151 64.2
Thecc.09G013300 Theobroma cacao HOM05D006886 ORTHO05D008494 6.5e-47 191.0 127 73.2
Sopen08g002580 Solanum pennellii HOM05D006886 ORTHO05D008494 1.1e-46 190.3 149 60.4
Cc08_g07710 Coffea canephora HOM05D006886 ORTHO05D008494 1.4e-46 189.9 150 63.3
Ca_13077_v3 Cicer arietinum L. HOM05D006886 ORTHO05D008494 1.9e-46 189.5 171 58.5
Hma1.2p1_0355F.1_g133950 Hydrangea macrophylla HOM05D006886 ORTHO05D008494 3.2e-46 188.7 154 63.0
PSO063G3428 Papaver somniferum HOM05D006886 ORTHO05D008494 3.2e-46 188.7 151 62.3
Solyc08g006630.3 Solanum lycopersicum HOM05D006886 ORTHO05D008494 3.2e-46 188.7 149 59.7
PGSC0003DMG400026287 Solanum tuberosum HOM05D006886 ORTHO05D008494 3.2e-46 188.7 149 60.4
Nitab4.5_0000264g0070 Nicotiana tabacum HOM05D006886 ORTHO05D008494 4.2e-46 188.3 147 61.2
SGA_v2.0_scaffold27G11627 Striga asiatica HOM05D006886 ORTHO05D008494 4.2e-46 188.3 149 59.1
arahy.Tifrunner.gnm1.ann1.QF2P07 Arachis hypogaea HOM05D006886 ORTHO05D008494 7.2e-46 187.6 146 66.4
EL10Ac2g02461 Beta vulgaris HOM05D006886 ORTHO05D008494 9.4e-46 187.2 157 61.8
TWI63G0132 Tripterygium wilfordii HOM05D006886 ORTHO05D008494 9.4e-46 187.2 151 61.6
Ah.15g098740 Amaranthus hybridus HOM05D006886 ORTHO05D008494 1.2e-45 186.8 146 64.4
ECA246G1281 Erigeron canadensis HOM05D006886 ORTHO05D008494 1.2e-45 186.8 147 61.9
PSO782G0555 Papaver somniferum HOM05D006886 ORTHO05D008494 1.2e-45 186.8 151 62.3
HanXRQChr17g0536351 Helianthus annuus HOM05D006886 ORTHO05D008494 2.1e-45 186.0 148 62.2
CsaV3_4G036380 Cucumis sativus L. HOM05D006886 ORTHO05D008494 4.7e-45 184.9 150 60.7
Carub.0004s0454 Capsella rubella HOM05D006886 ORTHO05D008494 6.1e-45 184.5 153 60.8
Gorai.001G038900 Gossypium raimondii HOM05D006886 ORTHO05D008494 6.1e-45 184.5 127 71.7
THA.LOC104819952 Tarenaya hassleriana HOM05D006886 ORTHO05D008494 7.9e-45 184.1 144 62.5
Actinidia14002 Actinidia chinensis HOM05D006886 ORTHO05D008494 1.4e-44 183.3 147 61.2
Thhalv10000363m.g Eutrema salsugineum HOM05D006886 ORTHO05D008494 1.8e-44 183.0 149 62.4
Sed0006692 Sechium edule HOM05D006886 ORTHO05D008494 1.8e-44 183.0 149 59.1
AL4G16050 Arabidopsis lyrata HOM05D006886 ORTHO05D008494 2.3e-44 182.6 149 61.1
Atru.chr7.2575 Acer truncatum HOM05D006886 ORTHO05D008494 3.0e-44 182.2 146 61.0
Aqoxy7G03293 Aquilegia oxysepala HOM05D006886 ORTHO05D008494 3.0e-44 182.2 150 62.7
MSTRG.11790 Avicennia marina HOM05D006886 ORTHO05D008494 3.0e-44 182.2 149 57.7
CAN.G285.18 Capsicum annuum HOM05D006886 ORTHO05D008494 3.0e-44 182.2 150 58.0
CARHR116750 Cardamine hirsuta HOM05D006886 ORTHO05D008494 3.9e-44 181.8 153 60.8
AUR62032440 Chenopodium quinoa HOM05D006886 ORTHO05D008494 8.8e-44 180.6 173 57.2
Eucgr.F04206 Eucalyptus grandis HOM05D006886 ORTHO05D008494 8.8e-44 180.6 149 59.7
TAR625G1053 Trochodendron aralioides HOM05D006886 ORTHO05D008494 1.1e-43 180.3 127 66.1
A09p55990 Brassica napus HOM05D006886 ORTHO05D008494 1.5e-43 179.9 149 59.1
A09p56060 Brassica napus HOM05D006886 ORTHO05D008494 1.5e-43 179.9 149 59.1
BraA09t41001Z Brassica rapa HOM05D006886 ORTHO05D008494 1.5e-43 179.9 149 59.1
Lalb_Chr14g0361721 Lupinus albus HOM05D006886 ORTHO05D008494 2.0e-43 179.5 147 61.2
AT2G24970 Arabidopsis thaliana HOM05D006886 ORTHO05D008494 3.3e-43 178.7 149 60.4
ClCG05G016110 Citrullus lanatus HOM05D006886 ORTHO05D008494 3.3e-43 178.7 177 53.1
Sp4g03960 Schrenkiella parvula HOM05D006886 ORTHO05D008494 3.3e-43 178.7 149 59.7
vmacro11273 Vaccinium macrocarpon HOM05D006886 ORTHO05D008494 3.3e-43 178.7 183 53.6
Nn2g12469 Nelumbo nucifera HOM05D006886 ORTHO05D008494 4.4e-43 178.3 130 66.2
PGR042G1056 Punica granatum HOM05D006886 ORTHO05D008494 5.7e-43 177.9 144 64.6
CDE04G0647 Ceratophyllum demersum HOM05D006886 ORTHO05D008494 7.4e-43 177.6 146 61.6
Migut.A00389 Erythranthe guttata HOM05D006886 ORTHO05D008494 7.4e-43 177.6 149 59.7
Hund25607 Selenicereus undatus HOM05D006886 ORTHO05D008494 7.4e-43 177.6 150 59.3
Sc17g0004260 Simmondsia chinensis HOM05D006886 ORTHO05D008494 7.4e-43 177.6 153 59.5
CSS0014970 Camellia sinensis var. sinensis HOM05D006886 ORTHO05D008494 1.7e-42 176.4 124 69.4
Oeu010292.1 Olea europaea HOM05D006886 ORTHO05D008494 1.7e-42 176.4 150 56.7
arahy.Tifrunner.gnm1.ann1.5WK6RP Arachis hypogaea HOM05D006886 ORTHO05D008494 5.3e-41 171.4 126 67.5
Dinv16422 Davidia involucrata HOM05D006886 ORTHO05D008494 5.3e-41 171.4 124 66.9
MBI15_g26075_MAGBIO Magnolia biondii HOM05D006886 ORTHO05D008494 3.5e-40 168.7 190 52.6
Psat6g024960 Pisum sativum HOM05D006886 ORTHO05D008494 4.5e-40 168.3 153 57.5
C08p38980 Brassica napus HOM05D006886 ORTHO05D008494 1.3e-39 166.8 149 56.4
VMungo0647G1481 Vigna mungo HOM05D006886 ORTHO05D008494 8.5e-39 164.1 126 63.5
RcHm_v2.0_Chr7g0186961 Rosa chinensis HOM05D006886 ORTHO05D008494 2.5e-38 162.5 90 91.1
BcaC07g40900 Brassica carinata HOM05D006886 ORTHO05D008494 7.2e-38 161.0 147 55.8
BolC8t51472H Brassica oleracea HOM05D006886 ORTHO05D008494 7.2e-38 161.0 147 55.8
AUR62024781 Chenopodium quinoa HOM05D006886 ORTHO05D008494 7.2e-38 161.0 113 69.0
ATR0580G343 Amborella trichopoda HOM05D006886 ORTHO05D008494 2.3e-36 156.0 150 53.3
BcaB08g35125 Brassica carinata HOM05D006886 ORTHO05D008494 1.2e-35 153.7 124 63.7
Cfa001083 Carpinus fangiana HOM05D006886 ORTHO05D008494 3.7e-34 148.7 152 54.6
SHI21090 Sapria himalayana HOM05D006886 ORTHO05D008494 4.8e-34 148.3 111 63.1
Aa31sc83G60 Aethionema arabicum HOM05D006886 ORTHO05D008494 3.5e-32 142.1 115 59.1
Nitab4.5_0001362g0050 Nicotiana tabacum HOM05D006886 ORTHO05D008494 1.3e-31 140.2 94 68.1
Peaxi162Scf00045g01941 Petunia axillaris HOM05D006886 ORTHO05D008494 1.5e-30 136.7 149 49.7
Os01g0766400 Oryza sativa ssp. japonica HOM05D006886 ORTHO05D008494 2.2e-26 122.9 144 43.8
GSVIVG01036003001 Vitis vinifera HOM05D006886 ORTHO05D008494 1.7e-23 113.2 72 72.2
Zm00001eb192560 Zea mays HOM05D006886 ORTHO05D008494 1.7e-23 113.2 146 38.4
Gohir.D07G037233 Gossypium hirsutum HOM05D006886 ORTHO05D008494 1.1e-22 110.5 73 72.6
MELO3C032323.2 Cucumis melo HOM05D006886 ORTHO05D008494 1.9e-22 109.8 70 72.9
Hma1.2p1_0355F.1_g133940 Hydrangea macrophylla HOM05D006886 ORTHO05D008494 3.2e-22 109.0 79 68.4
MD05G1059000 Malus domestica HOM05D006886 ORTHO05D008494 1.2e-21 107.1 70 75.7
Cfa023326 Carpinus fangiana HOM05D006886 ORTHO05D008494 2.3e-20 102.8 90 58.9
AagrBONN_evm.TU.Sc2ySwM_344.4138 Anthoceros agrestis HOM05D006886 ORTHO05D008494 3.0e-20 102.4 122 40.2
GSVIVG01036001001 Vitis vinifera HOM05D006886 ORTHO05D008494 6.8e-20 101.3 80 66.2
Pp3c17_11010 Physcomitrium patens HOM05D006886 ORTHO05D008494 8.8e-20 100.9 118 42.4
Pp3c14_9080 Physcomitrium patens HOM05D006886 ORTHO05D008494 3.4e-19 99.0 101 43.6
Mapoly0034s0101 Marchantia polymorpha HOM05D006886 ORTHO05D008494 7.5e-19 97.8 132 37.9
SalBow4G1854 Salvia bowleyana HOM05D006886 ORTHO05D008494 1.1e-14 84.0 81 51.9
MELO3C032324.2 Cucumis melo HOM05D006886 ORTHO05D008494 1.2e-11 73.9 98 41.8
Ca_06796_v3 Cicer arietinum L. HOM05D006886 ORTHO05D008494 1.7e-10 70.1 61 59.0
Cre03.g201500 Chlamydomonas reinhardtii HOM05D006886 ORTHO05D008494 1.1e-09 67.4 141 29.1
Ca_13745_v3 Cicer arietinum L. HOM05D006886 ORTHO05D008494 1.1e-09 67.4 57 61.4
CAN.G285.15 Capsicum annuum HOM05D006886 ORTHO05D008494 1.1e-06 57.4 69 43.5


User provided reference genes

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