Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0299081 Rosa chinensis HOM05D007824 ORTHO05D009875 8.8e-23 109.4 54 100.0
Prupe.1G398400 Prunus persica HOM05D007824 ORTHO05D009875 3.8e-18 94.0 54 87.0
MD08G1050300 Malus domestica HOM05D007824 ORTHO05D009875 2.5e-17 91.3 54 81.5
MD15G1044500 Malus domestica HOM05D007824 ORTHO05D009875 2.1e-16 88.2 54 77.8
Ciclev10010135m.g Citrus clementina HOM05D007824 ORTHO05D009875 8.9e-15 82.8 54 81.5
CSS0038513 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 2.0e-14 81.6 54 79.6
Eucgr.C04026 Eucalyptus grandis HOM05D007824 ORTHO05D009875 2.6e-14 81.3 54 77.8
Nitab4.5_0007473g0010 Nicotiana tabacum HOM05D007824 ORTHO05D009875 1.3e-13 79.0 54 75.9
CiPaw.07G233700 Carya illinoinensis HOM05D007824 ORTHO05D009875 2.2e-13 78.2 55 76.4
Solyc08g006580.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 2.2e-13 78.2 54 74.1
PGSC0003DMG402026306 Solanum tuberosum HOM05D007824 ORTHO05D009875 2.8e-13 77.8 54 74.1
Migut.A00397 Erythranthe guttata HOM05D007824 ORTHO05D009875 3.7e-13 77.4 54 74.1
ClCG05G016050 Citrullus lanatus HOM05D007824 ORTHO05D009875 4.9e-13 77.0 54 72.2
Sc23g0006310 Simmondsia chinensis HOM05D007824 ORTHO05D009875 4.9e-13 77.0 55 74.5
Sed0001567 Sechium edule HOM05D007824 ORTHO05D009875 6.3e-13 76.6 54 72.2
Migut.E01438 Erythranthe guttata HOM05D007824 ORTHO05D009875 8.3e-13 76.3 54 70.4
CiPaw.08G004000 Carya illinoinensis HOM05D007824 ORTHO05D009875 1.1e-12 75.9 55 76.4
MELO3C016940.2 Cucumis melo HOM05D007824 ORTHO05D009875 1.8e-12 75.1 54 70.4
Thecc.09G011700 Theobroma cacao HOM05D007824 ORTHO05D009875 5.4e-12 73.6 51 72.5
Atru.chr7.2598 Acer truncatum HOM05D007824 ORTHO05D009875 7.0e-12 73.2 55 69.1
ClCG08G013840 Citrullus lanatus HOM05D007824 ORTHO05D009875 7.0e-12 73.2 54 68.5
Sed0025799 Sechium edule HOM05D007824 ORTHO05D009875 9.2e-12 72.8 54 66.7
Duzib168G1878 Durio zibethinus HOM05D007824 ORTHO05D009875 2.0e-11 71.6 51 68.6
Manes.03G006300 Manihot esculenta HOM05D007824 ORTHO05D009875 2.0e-11 71.6 45 80.0
Sed0025864 Sechium edule HOM05D007824 ORTHO05D009875 2.0e-11 71.6 54 68.5
Oeu030057.1 Olea europaea HOM05D007824 ORTHO05D009875 2.7e-11 71.2 54 68.5
Gohir.A13G178900 Gossypium hirsutum HOM05D007824 ORTHO05D009875 3.5e-11 70.9 46 78.3
Gohir.D13G187000 Gossypium hirsutum HOM05D007824 ORTHO05D009875 3.5e-11 70.9 46 78.3
Sed0013399 Sechium edule HOM05D007824 ORTHO05D009875 4.5e-11 70.5 54 66.7
CSS0035617 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 7.8e-11 69.7 54 72.2
Glyma.04G059451 Glycine max HOM05D007824 ORTHO05D009875 1.7e-10 68.6 54 63.0
Gohir.A05G062100 Gossypium hirsutum HOM05D007824 ORTHO05D009875 1.7e-10 68.6 54 64.8
Nn5g27701 Nelumbo nucifera HOM05D007824 ORTHO05D009875 2.9e-10 67.8 54 66.7
CSS0021115 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 3.9e-10 67.4 54 68.5
CSS0044029 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 5.0e-10 67.0 54 70.4
Zm00001eb221680 Zea mays HOM05D007824 ORTHO05D009875 5.0e-10 67.0 48 64.6
CSS0008945 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 6.6e-10 66.6 54 68.5
CSS0041715 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 6.6e-10 66.6 53 69.8
THA.LOC104803330 Tarenaya hassleriana HOM05D007824 ORTHO05D009875 6.6e-10 66.6 45 71.1
BcaB01g06276 Brassica carinata HOM05D007824 ORTHO05D009875 8.6e-10 66.2 54 63.0
Gohir.D05G064600 Gossypium hirsutum HOM05D007824 ORTHO05D009875 8.6e-10 66.2 54 61.1
AT5G10745 Arabidopsis thaliana HOM05D007824 ORTHO05D009875 1.1e-09 65.9 54 63.0
BcaB01g05502 Brassica carinata HOM05D007824 ORTHO05D009875 1.1e-09 65.9 54 63.0
A03p04740 Brassica napus HOM05D007824 ORTHO05D009875 1.1e-09 65.9 54 63.0
C03p05450 Brassica napus HOM05D007824 ORTHO05D009875 1.1e-09 65.9 54 63.0
BraA03t09814Z Brassica rapa HOM05D007824 ORTHO05D009875 1.1e-09 65.9 54 63.0
Gorai.009G065300 Gossypium raimondii HOM05D007824 ORTHO05D009875 1.1e-09 65.9 54 61.1
unitig_46.g18221 Utricularia gibba HOM05D007824 ORTHO05D009875 1.1e-09 65.9 54 57.4
Glyma.06G059900 Glycine max HOM05D007824 ORTHO05D009875 1.5e-09 65.5 54 61.1
Potri.018G014101 Populus trichocarpa HOM05D007824 ORTHO05D009875 1.9e-09 65.1 45 73.3
Phvul.009G085600 Phaseolus vulgaris HOM05D007824 ORTHO05D009875 2.5e-09 64.7 54 61.1
AL6G21300 Arabidopsis lyrata HOM05D007824 ORTHO05D009875 3.3e-09 64.3 54 61.1
Lalb_Chr08g0244541 Lupinus albus HOM05D007824 ORTHO05D009875 5.6e-09 63.5 54 57.4
Os10g0478900 Oryza sativa ssp. japonica HOM05D007824 ORTHO05D009875 5.6e-09 63.5 44 65.9
Aa31LG3G16350 Aethionema arabicum HOM05D007824 ORTHO05D009875 7.3e-09 63.2 46 69.6
Oeu006856.1 Olea europaea HOM05D007824 ORTHO05D009875 7.3e-09 63.2 49 59.2
Carub.0006s0922 Capsella rubella HOM05D007824 ORTHO05D009875 9.5e-09 62.8 46 65.2
CARHR202570 Cardamine hirsuta HOM05D007824 ORTHO05D009875 1.2e-08 62.4 54 63.0
Thhalv10015471m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 1.2e-08 62.4 54 63.0
Medtr1g013350 Medicago truncatula HOM05D007824 ORTHO05D009875 2.8e-08 61.2 48 66.7
Medtr3g105765 Medicago truncatula HOM05D007824 ORTHO05D009875 6.1e-08 60.1 54 61.1
FAN27G2847 Fragaria x ananassa HOM05D049114 ORTHO05D046574 8.0e-08 59.7 32 87.5
FAN15G1780 Fragaria x ananassa HOM05D049114 ORTHO05D046574 1.0e-07 59.3 33 84.8
arahy.Tifrunner.gnm1.ann1.58R7DF Arachis hypogaea HOM05D007824 ORTHO05D009875 1.4e-07 58.9 60 53.3
arahy.Tifrunner.gnm1.ann1.A82CWH Arachis hypogaea HOM05D007824 ORTHO05D009875 1.4e-07 58.9 60 53.3
Lj5g0022212 Lotus japonicus HOM05D007824 ORTHO05D009875 5.2e-07 57.0 61 52.5
TPR.G38894 Trifolium pratense HOM05D007824 ORTHO05D009875 5.2e-07 57.0 67 50.7
Glyma.17G221200 Glycine max HOM05D007824 ORTHO05D009875 6.8e-07 56.6 66 48.5
Psat6g024640 Pisum sativum HOM05D007824 ORTHO05D009875 1.5e-06 55.5 67 49.3
Glyma.14G104600 Glycine max HOM05D007824 ORTHO05D009875 3.4e-06 54.3 53 56.6
DCAR_000681 Daucus carota HOM05D007824 ORTHO05D009875 4.4e-06 53.9 38 60.5
Mapoly0056s0140 Marchantia polymorpha HOM05D007824 ORTHO05D009875 9.8e-06 52.8 41 65.9


User provided reference genes

Program Settings