Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0298841 Rosa chinensis HOM05D003875 ORTHO05D004240 2.1e-97 359.0 174 100.0
FvH4_2g29810 Fragaria vesca HOM05D003875 ORTHO05D004240 1.5e-60 236.5 153 78.4
Prupe.1G471500 Prunus persica HOM05D003875 ORTHO05D004240 1.3e-54 216.9 155 69.0
MD08G1141600 Malus domestica HOM05D003875 ORTHO05D004240 8.5e-51 204.1 153 68.0
QL12p024553 Quercus lobata HOM05D003875 ORTHO05D004240 8.8e-48 194.1 154 63.0
Haze_21599 Corylus avellana HOM05D003875 ORTHO05D004240 3.1e-45 185.7 174 55.7
Cfa013196 Carpinus fangiana HOM05D003491 ORTHO05D004293 5.3e-45 184.9 174 55.7
CiPaw.08G014300 Carya illinoinensis HOM05D003875 ORTHO05D004240 1.0e-43 180.6 153 57.5
Potri.018G032700 Populus trichocarpa HOM05D003875 ORTHO05D004240 1.6e-41 173.3 148 57.4
Ciclev10008314m.g Citrus clementina HOM05D003875 ORTHO05D004240 1.8e-40 169.9 169 52.1
Lalb_Chr04g0257471 Lupinus albus HOM05D003875 ORTHO05D004240 3.3e-39 165.6 150 55.3
arahy.Tifrunner.gnm1.ann1.3Z1QL9 Arachis hypogaea HOM05D003875 ORTHO05D004240 7.5e-39 164.5 150 56.7
Duzib168G0377 Durio zibethinus HOM05D003875 ORTHO05D004240 9.7e-39 164.1 155 54.2
Sabra18G0033500 Salix brachista HOM05D003875 ORTHO05D004240 2.2e-38 162.9 149 53.7
CANSAT64G0144 Cannabis sativa HOM05D003875 ORTHO05D004240 6.3e-38 161.4 152 52.6
arahy.Tifrunner.gnm1.ann1.R0TJM1 Arachis hypogaea HOM05D003875 ORTHO05D004240 1.4e-37 160.2 150 56.0
Phvul.001G054300 Phaseolus vulgaris HOM05D003875 ORTHO05D004240 1.4e-37 160.2 152 55.9
Dinv11597 Davidia involucrata HOM05D003875 ORTHO05D004240 5.3e-37 158.3 156 56.4
Lj4g0004496 Lotus japonicus HOM05D003875 ORTHO05D004240 1.2e-36 157.1 147 53.7
Thecc.09G147200 Theobroma cacao HOM05D003875 ORTHO05D004240 1.2e-36 157.1 155 51.6
Atru.chr7.2348 Acer truncatum HOM05D003875 ORTHO05D004240 1.6e-36 156.8 173 49.7
Manes.03G018500 Manihot esculenta HOM05D003875 ORTHO05D004240 5.9e-36 154.8 154 51.9
Ca_12920_v3 Cicer arietinum L. HOM05D003875 ORTHO05D004240 1.7e-35 153.3 157 48.4
FAN24G0947 Fragaria x ananassa HOM05D003875 ORTHO05D004240 2.9e-35 152.5 85 87.1
TWI34G0133 Tripterygium wilfordii HOM05D003875 ORTHO05D004240 2.9e-35 152.5 156 52.6
Atru.chr7.2231 Acer truncatum HOM05D003875 ORTHO05D004240 5.0e-35 151.8 157 54.1
Atru.chr7.2352 Acer truncatum HOM05D003875 ORTHO05D004240 5.0e-35 151.8 157 54.1
Actinidia13268 Actinidia chinensis HOM05D003875 ORTHO05D004240 1.1e-34 150.6 156 51.3
Glyma.17G206400 Glycine max HOM05D003875 ORTHO05D004240 9.4e-34 147.5 146 52.1
Oeu030072.1 Olea europaea HOM05D003875 ORTHO05D004240 9.4e-34 147.5 155 52.9
Cc11_g01490 Coffea canephora HOM05D003875 ORTHO05D004240 1.2e-33 147.1 153 49.0
Sc23g0006970 Simmondsia chinensis HOM05D003875 ORTHO05D004240 1.6e-33 146.7 156 48.7
GSVIVG01035782001 Vitis vinifera HOM05D003875 ORTHO05D004240 2.1e-33 146.4 156 49.4
VMungo0647G0068 Vigna mungo HOM05D003875 ORTHO05D004240 6.1e-33 144.8 151 51.7
FAN15G3748 Fragaria x ananassa HOM05D003875 ORTHO05D004240 3.0e-32 142.5 81 85.2
Aqoxy7G01948 Aquilegia oxysepala HOM05D003875 ORTHO05D004240 9.8e-31 137.5 160 46.9
TPR.G15662 Trifolium pratense HOM05D003875 ORTHO05D004240 1.7e-30 136.7 158 47.5
Psat6g030240 Pisum sativum HOM05D003875 ORTHO05D004240 6.3e-30 134.8 154 45.5
Medtr1g011660 Medicago truncatula HOM05D003875 ORTHO05D004240 1.1e-29 134.0 152 44.7
FAN27G0381 Fragaria x ananassa HOM05D003875 ORTHO05D004240 1.4e-29 133.7 91 74.7
Rhsim02G0189500 Rhododendron simsii HOM05D003875 ORTHO05D004240 2.4e-29 132.9 159 48.4
Atru.chr7.2228 Acer truncatum HOM05D003875 ORTHO05D004240 1.0e-27 127.5 138 51.4
PGR044G0870 Punica granatum HOM05D003875 ORTHO05D004240 1.3e-27 127.1 153 45.8
Eucgr.C02832 Eucalyptus grandis HOM05D003875 ORTHO05D004240 5.0e-27 125.2 159 45.9
AUR62032357 Chenopodium quinoa HOM05D003875 ORTHO05D004240 1.9e-26 123.2 151 43.0
AUR62041852 Chenopodium quinoa HOM05D003875 ORTHO05D004240 9.5e-26 120.9 148 41.9
RhsimUnG0038500 Rhododendron simsii HOM05D003875 ORTHO05D004240 1.6e-25 120.2 159 45.3
COL.COLO4_24012 Corchorus olitorius HOM05D003875 ORTHO05D004240 3.6e-25 119.0 133 45.9
MSTRG.11749 Avicennia marina HOM05D003875 ORTHO05D004240 1.8e-24 116.7 140 45.0
Migut.A00291 Erythranthe guttata HOM05D003875 ORTHO05D004240 4.0e-24 115.5 163 46.0
Ah.12g063710 Amaranthus hybridus HOM05D003875 ORTHO05D004240 6.8e-24 114.8 163 38.0
Cpa.g.sc55.105 Carica papaya HOM05D003875 ORTHO05D004240 2.0e-23 113.2 151 45.7
PSO170G4839 Papaver somniferum HOM05D003875 ORTHO05D004240 4.4e-23 112.1 158 43.0
EL10Ac2g02560 Beta vulgaris HOM05D003875 ORTHO05D004240 9.8e-23 110.9 155 37.4
MBI01_g15494_MAGBIO Magnolia biondii HOM05D003875 ORTHO05D004240 2.8e-22 109.4 155 39.4
Aa31sc251G50 Aethionema arabicum HOM05D003875 ORTHO05D004240 5.9e-20 101.7 154 37.0
Thhalv10025128m.g Eutrema salsugineum HOM05D003875 ORTHO05D004240 3.3e-18 95.9 157 38.2
BcaC09g52043 Brassica carinata HOM05D003875 ORTHO05D004240 3.6e-17 92.4 157 37.6
C01p06480 Brassica napus HOM05D003875 ORTHO05D004240 4.7e-17 92.0 157 37.6
AT4G29250 Arabidopsis thaliana HOM05D003875 ORTHO05D004240 1.4e-16 90.5 154 37.0
Carub.0007s1135 Capsella rubella HOM05D003875 ORTHO05D004240 1.8e-16 90.1 155 36.8
RhsimUnG0218800 Rhododendron simsii HOM05D003875 ORTHO05D004240 2.3e-16 89.7 112 50.9
Sp7g30310 Schrenkiella parvula HOM05D003875 ORTHO05D004240 2.3e-16 89.7 152 34.9
AL7G23210 Arabidopsis lyrata HOM05D003875 ORTHO05D004240 3.0e-16 89.4 150 36.7
CARHR240470 Cardamine hirsuta HOM05D003875 ORTHO05D004240 4.0e-16 89.0 150 36.7
Rhsim02G0190700 Rhododendron simsii HOM05D003875 ORTHO05D004240 5.2e-16 88.6 106 49.1
BolC1t00642H Brassica oleracea HOM05D003875 ORTHO05D004240 1.2e-15 87.4 157 35.7
A01p05860 Brassica napus HOM05D003875 ORTHO05D004240 3.4e-15 85.9 150 38.0
FAN27G3504 Fragaria x ananassa HOM05D003875 ORTHO05D004240 7.5e-15 84.7 50 80.0
THA.LOC104803631 Tarenaya hassleriana HOM05D003875 ORTHO05D004240 1.4e-13 80.5 154 35.1
Rhsim02G0191700 Rhododendron simsii HOM05D003875 ORTHO05D004240 1.3e-11 73.9 115 42.6
SEGI_28149 Sequoiadendron giganteum HOM05D003875 ORTHO05D004240 1.5e-10 70.5 150 30.0
ATR0083G032 Amborella trichopoda HOM05D003875 ORTHO05D004240 2.1e-09 66.6 155 31.6
Thecc.05G286300 Theobroma cacao HOM05D003875 ORTHO05D004240 2.1e-09 66.6 178 27.5
ATR0665G289 Amborella trichopoda HOM05D003875 ORTHO05D004240 8.0e-09 64.7 156 30.1
HanXRQChr05g0149281 Helianthus annuus HOM05D003875 ORTHO05D004240 1.1e-08 64.3 162 28.4
COL.COLO4_15311 Corchorus olitorius HOM05D003875 ORTHO05D004240 1.4e-08 63.9 177 26.0
Migut.A00295 Erythranthe guttata HOM05D003875 ORTHO05D004240 1.4e-08 63.9 92 44.6
Dinv30196 Davidia involucrata HOM05D003875 ORTHO05D004240 2.3e-08 63.2 65 52.3
PGR083G0707 Punica granatum HOM05D003875 ORTHO05D004240 2.3e-08 63.2 150 25.3
Duzib128G0249 Durio zibethinus HOM05D003875 ORTHO05D004240 5.2e-08 62.0 155 30.3
CANSAT54G0990 Cannabis sativa HOM05D003875 ORTHO05D004240 9.8e-07 57.8 171 25.1
DCAR_007686 Daucus carota HOM05D003875 ORTHO05D004240 2.9e-06 56.2 84 40.5
Haze_11904 Corylus avellana HOM05D003875 ORTHO05D004240 8.3e-06 54.7 167 28.7


User provided reference genes

Program Settings