Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0298581 Rosa chinensis HOM05D008288 ORTHO05D010469 9.4e-165 583.6 316 100.0
FAN27G1450 Fragaria x ananassa HOM05D008288 ORTHO05D010469 2.2e-153 545.8 317 93.7
FAN15G2470 Fragaria x ananassa HOM05D008288 ORTHO05D010469 6.3e-153 544.3 317 93.4
FvH4_2g29591 Fragaria vesca HOM05D008288 ORTHO05D010469 7.0e-152 540.8 316 93.0
MD15G1120900 Malus domestica HOM05D008288 ORTHO05D010469 1.2e-130 470.3 317 81.4
MD08G1145200 Malus domestica HOM05D008288 ORTHO05D010469 2.6e-122 442.6 307 79.8
Thecc.09G149300 Theobroma cacao HOM05D008288 ORTHO05D010469 1.2e-116 423.7 307 75.2
Hma1.2p1_0000F.1_g000730 Hydrangea macrophylla HOM05D008288 ORTHO05D010469 4.4e-114 415.2 304 73.7
Actinidia22367 Actinidia chinensis HOM05D008288 ORTHO05D010469 3.7e-113 412.1 305 73.4
Prupe.1G473500 Prunus persica HOM05D008288 ORTHO05D010469 4.9e-113 411.8 306 75.8
CSS0049569 Camellia sinensis var. sinensis HOM05D008288 ORTHO05D010469 8.3e-113 411.0 306 72.9
Duzib150G0406 Durio zibethinus HOM05D008288 ORTHO05D010469 1.6e-111 406.8 303 73.6
Potri.006G251000 Populus trichocarpa HOM05D008288 ORTHO05D010469 1.7e-110 403.3 306 70.3
COL.COLO4_23981 Corchorus olitorius HOM05D008288 ORTHO05D010469 1.1e-109 400.6 304 73.4
Gohir.D05G048766 Gossypium hirsutum HOM05D008288 ORTHO05D010469 1.1e-109 400.6 308 71.4
Gorai.009G050100 Gossypium raimondii HOM05D008288 ORTHO05D010469 1.5e-109 400.2 308 71.1
Gohir.A05G047000 Gossypium hirsutum HOM05D008288 ORTHO05D010469 4.7e-108 395.2 308 69.8
PGR031G1353 Punica granatum HOM05D008288 ORTHO05D010469 7.5e-106 387.9 308 70.1
Atru.chr7.2381 Acer truncatum HOM05D008288 ORTHO05D010469 4.9e-105 385.2 307 68.7
TWI34G1005 Tripterygium wilfordii HOM05D008288 ORTHO05D010469 2.1e-103 379.8 295 71.5
QL02p022482 Quercus lobata HOM05D008288 ORTHO05D010469 2.7e-103 379.4 294 71.4
Ciclev10010324m.g Citrus clementina HOM05D008288 ORTHO05D010469 1.7e-102 376.7 307 67.1
ClCG05G017080 Citrullus lanatus HOM05D008288 ORTHO05D010469 2.3e-102 376.3 306 66.7
CsaV3_3G046560 Cucumis sativus L. HOM05D008288 ORTHO05D010469 3.0e-102 375.9 306 66.0
Sed0020459 Sechium edule HOM05D008288 ORTHO05D010469 5.1e-102 375.2 303 66.7
Nitab4.5_0015147g0010 Nicotiana tabacum HOM05D008288 ORTHO05D010469 1.9e-101 373.2 294 69.0
Peaxi162Scf00341g00011 Petunia axillaris HOM05D008288 ORTHO05D010469 1.9e-101 373.2 300 68.0
TAR625G1133 Trochodendron aralioides HOM05D008288 ORTHO05D010469 4.3e-101 372.1 304 69.1
Aqoxy7G02071 Aquilegia oxysepala HOM05D008288 ORTHO05D010469 1.4e-99 367.1 304 65.5
Sopen08g021110 Solanum pennellii HOM05D008288 ORTHO05D010469 4.0e-99 365.5 288 68.4
Solyc08g067170.3 Solanum lycopersicum HOM05D008288 ORTHO05D010469 1.7e-97 360.1 288 67.4
MBI04_g10412_MAGBIO Magnolia biondii HOM05D008288 ORTHO05D010469 5.4e-96 355.1 302 63.6
Cpa.g.sc91.46 Carica papaya HOM05D008288 ORTHO05D010469 1.6e-95 353.6 282 70.2
CAN.G348.1 Capsicum annuum HOM05D008288 ORTHO05D010469 2.3e-94 349.7 291 66.3
Nitab4.5_0000151g0060 Nicotiana tabacum HOM05D008288 ORTHO05D010469 1.6e-92 343.6 274 68.2
Phvul.009G095100 Phaseolus vulgaris HOM05D008288 ORTHO05D010469 1.6e-92 343.6 298 63.8
SalBow4G3001 Salvia bowleyana HOM05D008288 ORTHO05D010469 1.5e-90 337.0 293 62.8
DCAR_007695 Daucus carota HOM05D008288 ORTHO05D010469 2.6e-90 336.3 272 68.4
TPR.G31773 Trifolium pratense HOM05D008288 ORTHO05D010469 3.4e-90 335.9 303 62.4
Psat0ss3186g0240 Pisum sativum HOM05D008288 ORTHO05D010469 1.3e-89 334.0 305 62.0
VMungo1309G1559 Vigna mungo HOM05D008288 ORTHO05D010469 1.3e-89 334.0 295 63.1
Eucgr.C01784 Eucalyptus grandis HOM05D008288 ORTHO05D010469 2.9e-89 332.8 307 61.6
Dinv11620 Davidia involucrata HOM05D008288 ORTHO05D010469 4.9e-89 332.0 217 78.8
Ca_15724_v3 Cicer arietinum L. HOM05D008288 ORTHO05D010469 3.2e-88 329.3 311 60.5
Medtr3g107650 Medicago truncatula HOM05D008288 ORTHO05D010469 9.3e-88 327.8 302 60.6
Migut.A00319 Erythranthe guttata HOM05D008288 ORTHO05D010469 3.5e-87 325.9 295 61.4
Haze_21560 Corylus avellana HOM05D008288 ORTHO05D010469 1.7e-81 307.0 297 63.0
Manes.16G119800 Manihot esculenta HOM05D008288 ORTHO05D010469 1.7e-78 297.0 306 56.5
PSO455G0067 Papaver somniferum HOM05D008288 ORTHO05D010469 3.9e-78 295.8 292 58.2
MELO3C003683.2 Cucumis melo HOM05D008288 ORTHO05D010469 1.1e-77 294.3 307 54.1
PSO170G5425 Papaver somniferum HOM05D008288 ORTHO05D010469 3.1e-75 286.2 313 55.9
Dinv30173 Davidia involucrata HOM05D008288 ORTHO05D010469 3.4e-74 282.7 305 56.1
Glyma.04G068600 Glycine max HOM05D008288 ORTHO05D010469 3.9e-70 269.2 241 63.5
Lj1g0026401 Lotus japonicus HOM05D008288 ORTHO05D010469 7.4e-69 265.0 247 62.8
Cfa013175 Carpinus fangiana HOM05D008288 ORTHO05D010469 2.1e-60 236.9 234 63.2
Lsat_1_v5_gn_1_45101 Lactuca sativa HOM05D008288 ORTHO05D010469 4.2e-56 222.6 207 60.9
CANSAT54G0155 Cannabis sativa HOM05D008288 ORTHO05D010469 3.9e-54 216.1 192 60.4
ATR0815G056 Amborella trichopoda HOM05D008288 ORTHO05D010469 5.7e-37 159.1 269 40.1
Solyc08g069220.2 Solanum lycopersicum HOM05D008288 ORTHO05D010469 1.7e-25 120.9 268 35.1
SEGI_16453 Sequoiadendron giganteum HOM05D008288 ORTHO05D010469 2.3e-22 110.5 276 33.3
Sopen08g022840 Solanum pennellii HOM05D008288 ORTHO05D010469 6.3e-20 102.4 85 64.7
ClCG11G006020 Citrullus lanatus HOM05D000215 ORTHO05D008904 1.2e-10 71.6 270 27.4
CsaV3_6G001940 Cucumis sativus L. HOM05D000215 ORTHO05D008904 2.0e-10 70.9 270 27.0
MELO3C008310.2 Cucumis melo HOM05D000215 ORTHO05D008904 2.7e-10 70.5 270 27.0
AUR62012277 Chenopodium quinoa HOM05D000215 ORTHO05D008904 1.7e-09 67.8 271 26.6
EL10Ac2g04870 Beta vulgaris HOM05D000215 ORTHO05D008904 2.3e-09 67.4 268 25.0
MBI02_g37288_MAGBIO Magnolia biondii HOM05D000215 ORTHO05D007108 6.6e-09 65.9 218 29.8
Eucgr.H02615 Eucalyptus grandis HOM05D000215 ORTHO05D003454 1.1e-08 65.1 272 25.4
Pp3c3_32490 Physcomitrium patens HOM05D000271 ORTHO05D004758 1.9e-08 64.3 305 28.5
FvH4_1g29130 Fragaria vesca HOM05D001865 ORTHO05D001815 2.5e-08 63.9 284 22.2
Aa31LG1G16780 Aethionema arabicum HOM05D002131 ORTHO05D002141 4.2e-08 63.2 273 28.6
FAN19G0114 Fragaria x ananassa HOM05D001865 ORTHO05D001815 4.2e-08 63.2 284 22.2
Glyma.15G064800 Glycine max HOM05D000215 ORTHO05D007108 4.2e-08 63.2 232 29.3
Actinidia13517 Actinidia chinensis HOM05D000215 ORTHO05D003454 5.6e-08 62.8 269 27.1
FAN26G2438 Fragaria x ananassa HOM05D001865 ORTHO05D001815 5.6e-08 62.8 284 21.8
THA.LOC104806263 Tarenaya hassleriana HOM05D000215 ORTHO05D007108 7.2e-08 62.4 262 27.5
Aqoxy3G03021 Aquilegia oxysepala HOM05D000215 ORTHO05D003454 9.5e-08 62.0 267 26.2
FAN28G1515 Fragaria x ananassa HOM05D001865 ORTHO05D001815 9.5e-08 62.0 284 21.8
Lsat_1_v5_gn_9_17860 Lactuca sativa HOM05D000215 ORTHO05D002282 9.5e-08 62.0 270 23.7
MSTRG.18818 Avicennia marina HOM05D000215 ORTHO05D002282 1.2e-07 61.6 288 22.9
Lalb_Chr20g0122541 Lupinus albus HOM05D000215 ORTHO05D007108 1.6e-07 61.2 266 29.7
SHI02135 Sapria himalayana HOM05D000215 ORTHO05D007108 1.6e-07 61.2 239 28.9
Gorai.007G157900 Gossypium raimondii HOM05D000215 ORTHO05D002282 2.1e-07 60.8 277 23.1
Rhsim12G0121400 Rhododendron simsii HOM05D000215 ORTHO05D003454 2.1e-07 60.8 270 27.0
Duzib192G0603 Durio zibethinus HOM05D000215 ORTHO05D007108 2.8e-07 60.5 221 29.4
FAN23G2654 Fragaria x ananassa HOM05D001865 ORTHO05D001815 2.8e-07 60.5 284 21.8
Thecc.06G205300 Theobroma cacao HOM05D000215 ORTHO05D007108 2.8e-07 60.5 206 30.1
arahy.Tifrunner.gnm1.ann1.KQ5WJ5 Arachis hypogaea HOM05D000271 ORTHO05D004758 3.6e-07 60.1 312 25.0
arahy.Tifrunner.gnm1.ann1.XY0R0H Arachis hypogaea HOM05D000271 ORTHO05D004758 3.6e-07 60.1 313 26.2
Duzib235G1018 Durio zibethinus HOM05D000215 ORTHO05D007108 3.6e-07 60.1 201 29.4
Sabra11G0022800 Salix brachista HOM05D000215 ORTHO05D007108 4.7e-07 59.7 301 26.6
PGR119G1373 Punica granatum HOM05D000215 ORTHO05D003454 6.1e-07 59.3 298 25.2
Sabra11G0026300 Salix brachista HOM05D000215 ORTHO05D007108 6.1e-07 59.3 301 26.2
CiPaw.10G113900 Carya illinoinensis HOM05D000215 ORTHO05D007108 8.0e-07 58.9 203 31.0
COL.COLO4_31663 Corchorus olitorius HOM05D000215 ORTHO05D007108 8.0e-07 58.9 239 28.9
Duzib160G0747 Durio zibethinus HOM05D000215 ORTHO05D007108 8.0e-07 58.9 220 30.5
Gohir.A06G208700 Gossypium hirsutum HOM05D000215 ORTHO05D007108 8.0e-07 58.9 221 28.5
Gohir.D06G212400 Gossypium hirsutum HOM05D000215 ORTHO05D007108 8.0e-07 58.9 221 28.5
HanXRQChr08g0231761 Helianthus annuus HOM05D000215 ORTHO05D002282 8.0e-07 58.9 288 24.3
PSO210G4266 Papaver somniferum HOM05D000215 ORTHO05D007108 1.0e-06 58.5 217 30.4
PSO832G3300 Papaver somniferum HOM05D000215 ORTHO05D007108 1.0e-06 58.5 217 30.9
Ca_23967_v3 Cicer arietinum L. HOM05D006338 ORTHO05D007946 1.4e-06 58.2 304 25.7
Gohir.D11G147500 Gossypium hirsutum HOM05D000215 ORTHO05D002282 1.4e-06 58.2 277 22.7
Lalb_Chr10g0105221 Lupinus albus HOM05D000215 ORTHO05D008904 1.4e-06 58.2 270 25.2
MD07G1049200 Malus domestica HOM05D006338 ORTHO05D007946 1.4e-06 58.2 294 25.5
Phvul.008G134400 Phaseolus vulgaris HOM05D000215 ORTHO05D002282 1.4e-06 58.2 284 22.2
Nn1g06886 Nelumbo nucifera HOM05D000215 ORTHO05D007108 1.8e-06 57.8 217 30.9
Nitab4.5_0006979g0020 Nicotiana tabacum HOM05D000215 ORTHO05D002282 1.8e-06 57.8 279 24.4
Potri.011G033300 Populus trichocarpa HOM05D000215 ORTHO05D007108 1.8e-06 57.8 275 28.0
GSVIVG01006112001 Vitis vinifera HOM05D000215 ORTHO05D007108 1.8e-06 57.8 231 28.1
ATR0745G013 Amborella trichopoda HOM05D006338 ORTHO05D007946 2.3e-06 57.4 294 26.5
MSTRG.20988 Avicennia marina HOM05D000215 ORTHO05D002282 2.3e-06 57.4 288 22.6
HanXRQChr07g0193091 Helianthus annuus HOM05D000215 ORTHO05D002282 2.3e-06 57.4 270 22.6
Manes.16G015200 Manihot esculenta HOM05D000215 ORTHO05D007108 2.3e-06 57.4 200 29.0
DCAR_026544 Daucus carota HOM05D000215 ORTHO05D003454 3.0e-06 57.0 278 27.0
MD09G1261900 Malus domestica HOM05D001865 ORTHO05D001815 3.0e-06 57.0 302 21.5
COL.COLO4_36974 Corchorus olitorius HOM05D000215 ORTHO05D003454 4.0e-06 56.6 276 26.8
Dinv18963 Davidia involucrata HOM05D000215 ORTHO05D007108 4.0e-06 56.6 221 32.1
Gohir.A10G018000 Gossypium hirsutum HOM05D000215 ORTHO05D007108 4.0e-06 56.6 201 30.3
Gorai.011G020300 Gossypium raimondii HOM05D000215 ORTHO05D007108 4.0e-06 56.6 201 30.3
CSS0025946 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D003454 5.2e-06 56.2 254 25.6
CSS0030448 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D003454 5.2e-06 56.2 254 25.6
TPR.G13914 Trifolium pratense HOM05D000215 ORTHO05D007108 5.2e-06 56.2 204 30.9
Gohir.D10G018300 Gossypium hirsutum HOM05D000215 ORTHO05D007108 6.8e-06 55.8 201 30.3
Manes.17G031300 Manihot esculenta HOM05D000215 ORTHO05D007108 6.8e-06 55.8 220 29.1
Prupe.3G159600 Prunus persica HOM05D001865 ORTHO05D001815 6.8e-06 55.8 284 21.5
TAR627G1172 Trochodendron aralioides HOM05D000215 ORTHO05D007108 6.8e-06 55.8 223 28.7
Cpa.g.sc27.164 Carica papaya HOM05D000215 ORTHO05D007108 8.9e-06 55.5 229 27.9
Ciclev10030876m.g Citrus clementina HOM05D000215 ORTHO05D003454 8.9e-06 55.5 266 25.9
Dinv04102 Davidia involucrata HOM05D000215 ORTHO05D002282 8.9e-06 55.5 268 22.4
Glyma.18G155200 Glycine max HOM05D000215 ORTHO05D002282 8.9e-06 55.5 284 22.2
THA.LOC104812597 Tarenaya hassleriana HOM05D000215 ORTHO05D007108 8.9e-06 55.5 271 29.5


User provided reference genes

Program Settings