Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0298551 Rosa chinensis HOM05D011010 ORTHO05D012519 1.1e-145 520.0 273 100.0
FvH4_4g18641 Fragaria vesca HOM05D011010 ORTHO05D012519 6.4e-61 238.4 275 48.0
FAN12G1912 Fragaria x ananassa HOM05D011010 ORTHO05D012519 3.0e-58 229.6 275 47.6
FvH4_3g23932 Fragaria vesca HOM05D011010 ORTHO05D012519 4.9e-53 212.2 271 43.9
FvH4_3g35672 Fragaria vesca HOM05D011010 ORTHO05D012519 6.4e-53 211.8 274 41.2
RcHm_v2.0_Chr4g0406761 Rosa chinensis HOM05D011010 ORTHO05D012519 1.9e-49 200.3 100 97.0
FAN07G2530 Fragaria x ananassa HOM05D011010 ORTHO05D012519 1.7e-45 187.2 245 42.4
FAN05G2188 Fragaria x ananassa HOM05D003092 ORTHO05D003977 2.0e-38 163.7 215 41.9
FAN21G1238 Fragaria x ananassa HOM05D011010 ORTHO05D012519 5.4e-28 129.0 112 56.2
FAN12G0563 Fragaria x ananassa HOM05D011010 ORTHO05D012519 9.3e-28 128.3 273 30.4
RcHm_v2.0_Chr3g0494851 Rosa chinensis HOM05D011010 ORTHO05D012519 9.3e-28 128.3 120 53.3
RcHm_v2.0_Chr2g0111501 Rosa chinensis HOM05D011010 ORTHO05D012519 3.1e-23 113.2 68 98.5
FAN17G1074 Fragaria x ananassa HOM05D011010 ORTHO05D012519 1.4e-20 104.4 178 35.4
MD10G1235600 Malus domestica HOM05D011010 ORTHO05D012519 3.2e-20 103.2 141 40.4
FAN03G2119 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.0e-13 81.6 264 26.1
Prupe.4G233800 Prunus persica HOM05D004516 ORTHO05D005194 8.4e-13 78.6 204 30.4
FAN04G2130 Fragaria x ananassa HOM05D004096 ORTHO05D012519 1.4e-12 77.8 125 36.0
FAN18G2686 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.9e-12 77.4 264 25.4
FAN07G1974 Fragaria x ananassa HOM05D008328 ORTHO05D003172 2.1e-11 73.9 289 26.6
FAN01G1693 Fragaria x ananassa HOM05D011010 ORTHO05D012519 2.7e-11 73.6 107 44.9
FAN11G1400 Fragaria x ananassa HOM05D008328 ORTHO05D003172 3.5e-11 73.2 289 26.6
FAN14G0103 Fragaria x ananassa HOM05D008328 ORTHO05D003172 4.6e-11 72.8 290 27.2
FAN15G3561 Fragaria x ananassa HOM05D008328 ORTHO05D003172 4.6e-11 72.8 289 26.6
FAN04G2765 Fragaria x ananassa HOM05D008328 ORTHO05D003172 7.9e-11 72.0 289 26.6
FAN09G0970 Fragaria x ananassa HOM05D008328 ORTHO05D003172 7.9e-11 72.0 289 26.6
FAN10G4036 Fragaria x ananassa HOM05D008328 ORTHO05D003172 7.9e-11 72.0 289 26.6
FAN04G1029 Fragaria x ananassa HOM05D008328 ORTHO05D003172 1.3e-10 71.2 289 26.3
FAN11G3115 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.3e-10 71.2 221 28.1
FAN05G3353 Fragaria x ananassa HOM05D008328 ORTHO05D003172 1.8e-10 70.9 289 26.3
FAN11G2564 Fragaria x ananassa HOM05D011010 ORTHO05D012519 1.8e-10 70.9 118 36.4
FAN04G2813 Fragaria x ananassa HOM05D008328 ORTHO05D003172 2.3e-10 70.5 289 26.6
FvH4_7g17721 Fragaria vesca HOM05D011010 ORTHO05D012519 3.9e-10 69.7 160 30.6
FAN03G1903 Fragaria x ananassa HOM05D008328 ORTHO05D003172 3.9e-10 69.7 289 26.3
FAN03G0943 Fragaria x ananassa HOM05D008328 ORTHO05D003172 5.1e-10 69.3 289 26.3
FAN14G4484 Fragaria x ananassa HOM05D008328 ORTHO05D003172 5.1e-10 69.3 289 26.0
TWI56G0559 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 8.7e-10 68.6 275 26.9
TWI56G0638 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 1.1e-09 68.2 275 26.9
FAN27G0540 Fragaria x ananassa HOM05D008328 ORTHO05D003172 1.5e-09 67.8 289 26.3
MD02G1308300 Malus domestica HOM05D005145 ORTHO05D006062 1.5e-09 67.8 136 30.1
TWI23G0178 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 1.5e-09 67.8 194 27.8
Atru.chr1.2141 Acer truncatum HOM05D008413 ORTHO05D000401 1.9e-09 67.4 229 28.4
RcHm_v2.0_Chr6g0260681 Rosa chinensis HOM05D008529 ORTHO05D010219 1.9e-09 67.4 288 27.4
Atru.chr1.1934 Acer truncatum HOM05D008413 ORTHO05D000401 2.5e-09 67.0 229 27.5
FAN19G2410 Fragaria x ananassa HOM05D008328 ORTHO05D003172 4.3e-09 66.2 230 29.1
Hma1.2p1_0921F.1_g236870 Hydrangea macrophylla HOM05D001576 ORTHO05D010219 5.7e-09 65.9 294 25.9
FAN19G2630 Fragaria x ananassa HOM05D008328 ORTHO05D003172 9.7e-09 65.1 289 26.3
FAN06G1918 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.6e-08 64.3 229 26.6
CSS0008946 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 8.2e-08 62.0 238 26.9
CiPaw.05G126800 Carya illinoinensis HOM05D001576 ORTHO05D000401 8.2e-08 62.0 273 23.4
CSS0008814 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.1e-07 61.6 238 26.9
CSS0023642 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.1e-07 61.6 238 26.9
CSS0041053 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.1e-07 61.6 238 26.9
FAN09G2774 Fragaria x ananassa HOM05D008328 ORTHO05D003172 1.1e-07 61.6 230 28.7
CSS0011061 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.4e-07 61.2 237 27.0
FAN02G0977 Fragaria x ananassa HOM05D011010 ORTHO05D012519 1.8e-07 60.8 147 29.9
Hund24086 Selenicereus undatus HOM05D000214 ORTHO05D011049 1.8e-07 60.8 197 28.4
TWI56G1359 Tripterygium wilfordii HOM05D020473 ORTHO05D026208 1.8e-07 60.8 129 29.5
Rhsim03G0135600 Rhododendron simsii HOM05D001576 ORTHO05D010219 2.4e-07 60.5 283 26.1
MD08G1042000 Malus domestica HOM05D000529 ORTHO05D012519 3.1e-07 60.1 167 31.7
CSS0002566 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.1e-07 59.7 262 24.8
HanXRQChr01g0013611 Helianthus annuus HOM05D007803 ORTHO05D007881 5.3e-07 59.3 132 30.3
CiPaw.03G181800 Carya illinoinensis HOM05D001576 ORTHO05D000401 6.9e-07 58.9 273 23.8
HanXRQChr01g0006531 Helianthus annuus HOM05D001218 ORTHO05D003142 6.9e-07 58.9 241 27.8
CSS0034959 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 9.0e-07 58.5 234 25.2
Ciclev10003979m.g Citrus clementina HOM05D001576 ORTHO05D000401 1.2e-06 58.2 284 23.2
Os12g0169300 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D000401 1.2e-06 58.2 291 24.7
Os12g0228500 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D000401 1.2e-06 58.2 291 24.7
CSS0004599 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.5e-06 57.8 290 24.1
CSS0012194 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.4e-06 56.6 221 26.2
CSS0032344 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 3.4e-06 56.6 292 25.7
BcaC08g43897 Brassica carinata HOM05D007743 ORTHO05D004645 4.5e-06 56.2 174 30.5
CSS0006860 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.5e-06 56.2 219 26.0
FAN15G1570 Fragaria x ananassa HOM05D008328 ORTHO05D003172 4.5e-06 56.2 143 28.0
HanXRQChr16g0526551 Helianthus annuus HOM05D007803 ORTHO05D007881 5.9e-06 55.8 236 25.0
PSO063G4627 Papaver somniferum HOM05D008529 ORTHO05D010219 5.9e-06 55.8 296 22.0
PSO384G2190 Papaver somniferum HOM05D008413 ORTHO05D000401 5.9e-06 55.8 166 28.9
PSO541G0169 Papaver somniferum HOM05D008529 ORTHO05D010219 5.9e-06 55.8 296 22.3
PSO541G3973 Papaver somniferum HOM05D008529 ORTHO05D010219 5.9e-06 55.8 296 22.3
PSO675G7323 Papaver somniferum HOM05D008529 ORTHO05D010219 5.9e-06 55.8 296 22.3
FvH4_7g13271 Fragaria vesca HOM05D001576 ORTHO05D000401 7.7e-06 55.5 291 22.7
Hma1.2p1_0324F.1_g125640 Hydrangea macrophylla HOM05D001576 ORTHO05D000401 7.7e-06 55.5 284 23.6
PSO170G2488 Papaver somniferum HOM05D008529 ORTHO05D010219 7.7e-06 55.5 247 25.9
Rhsim01G0133600 Rhododendron simsii HOM05D001576 ORTHO05D010219 7.7e-06 55.5 185 27.6
PSO724G0644 Papaver somniferum HOM05D008529 ORTHO05D010219 1.0e-05 55.1 203 26.1


User provided reference genes

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