Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 2.7e-112 408.7 208 100.0
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 1.5e-99 366.3 208 88.5
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 5.9e-99 364.4 208 88.0
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.2e-98 362.5 208 87.5
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.8e-98 361.7 208 87.5
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.1e-97 360.1 208 86.5
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 2.6e-91 339.0 208 85.6
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 1.7e-90 336.3 207 83.1
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 6.5e-90 334.3 208 84.6
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 9.7e-86 320.5 211 78.2
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 7.0e-84 314.3 211 76.3
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.2e-83 313.5 207 77.8
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 1.2e-83 313.5 208 78.4
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 5.5e-81 304.7 206 76.7
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 5.5e-81 304.7 205 73.7
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 7.2e-81 304.3 211 74.9
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.2e-80 303.5 212 73.1
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 6.1e-80 301.2 207 75.4
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 6.1e-80 301.2 207 75.8
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.0e-79 300.4 208 76.0
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 1.4e-79 300.1 207 74.9
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.8e-79 299.7 212 75.5
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 1.8e-79 299.7 207 74.4
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.8e-79 299.7 203 74.9
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.3e-79 299.3 205 75.1
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.3e-79 299.3 205 75.1
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 2.3e-79 299.3 206 73.8
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 3.0e-79 298.9 194 78.9
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.2e-79 298.1 195 79.5
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.2e-78 297.0 198 76.8
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.5e-78 296.6 207 72.9
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.5e-78 296.6 201 74.6
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 2.0e-78 296.2 206 72.3
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 5.7e-78 294.7 208 73.1
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 1.7e-77 293.1 207 72.0
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.7e-77 293.1 201 76.1
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 2.8e-77 292.4 201 75.6
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 4.8e-77 291.6 203 73.9
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 6.3e-77 291.2 199 73.4
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 6.3e-77 291.2 201 75.6
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 8.2e-77 290.8 207 71.0
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.1e-76 290.4 198 77.8
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 1.4e-76 290.0 202 75.2
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 4.1e-76 288.5 198 77.3
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 4.1e-76 288.5 199 76.4
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.3e-76 288.1 198 77.3
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 5.3e-76 288.1 202 73.3
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 7.0e-76 287.7 195 74.4
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 9.1e-76 287.3 189 78.3
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 1.2e-75 287.0 207 71.0
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 1.6e-75 286.6 226 69.5
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 2.0e-75 286.2 182 79.1
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 3.5e-75 285.4 189 77.2
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 7.7e-75 284.3 201 71.6
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 7.7e-75 284.3 206 72.8
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.7e-74 283.1 201 72.6
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.8e-74 282.0 200 72.5
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 3.8e-74 282.0 201 73.1
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 6.5e-74 281.2 209 71.3
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 6.5e-74 281.2 175 78.3
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 1.1e-73 280.4 199 73.4
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 2.5e-73 279.3 200 72.5
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 3.2e-73 278.9 197 72.1
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.2e-73 278.5 191 73.8
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 7.2e-73 277.7 193 73.1
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 9.4e-73 277.3 213 69.0
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 9.4e-73 277.3 228 67.5
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.6e-72 276.6 208 69.2
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 3.6e-72 275.4 186 74.2
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 4.0e-71 271.9 209 67.9
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 6.8e-71 271.2 196 71.4
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 6.8e-71 271.2 197 69.0
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.2e-70 270.4 193 73.1
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 1.5e-70 270.0 196 67.9
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 2.0e-70 269.6 202 70.3
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 2.0e-70 269.6 292 53.8
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 5.7e-70 268.1 201 68.7
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 5.7e-70 268.1 188 69.1
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 7.5e-70 267.7 203 67.0
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.7e-69 266.5 212 67.9
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.8e-69 265.8 203 67.0
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 3.7e-69 265.4 203 67.5
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 6.3e-69 264.6 208 65.4
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 8.3e-69 264.2 198 70.2
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 1.1e-68 263.8 208 67.3
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 1.8e-68 263.1 208 67.3
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 5.4e-68 261.5 208 66.8
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.2e-67 260.4 160 81.9
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.7e-67 259.2 198 69.2
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 7.7e-67 257.7 197 68.0
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 7.7e-67 257.7 193 66.8
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 1.0e-66 257.3 198 66.2
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 2.3e-66 256.1 208 62.0
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 2.3e-66 256.1 199 68.3
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 2.3e-66 256.1 206 65.0
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 2.9e-66 255.8 208 65.4
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 2.9e-66 255.8 201 65.7
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 5.0e-66 255.0 214 65.0
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 8.6e-66 254.2 198 68.2
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 8.6e-66 254.2 207 65.2
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 8.6e-66 254.2 199 65.8
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 1.1e-65 253.8 214 64.5
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 1.1e-65 253.8 162 79.0
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 1.5e-65 253.4 206 62.1
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.5e-65 252.7 203 65.0
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 3.3e-65 252.3 206 62.6
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.1e-64 249.6 206 63.6
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.0e-63 247.3 206 64.1
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 1.8e-63 246.5 206 61.2
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 1.8e-63 246.5 191 64.9
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 2.3e-63 246.1 169 75.7
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 6.8e-63 244.6 159 79.9
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 6.8e-63 244.6 197 62.9
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.0e-62 243.0 197 66.0
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 3.4e-62 242.3 202 64.9
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.7e-61 240.0 174 69.5
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.7e-61 240.0 170 72.4
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.8e-60 236.5 199 65.3
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 4.1e-60 235.3 174 66.7
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 1.2e-59 233.8 170 68.8
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.9e-58 229.2 196 62.8
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 9.8e-54 214.2 195 61.0
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 8.3e-53 211.1 204 60.8
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.1e-49 200.7 127 79.5
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 1.1e-49 200.7 128 79.7
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.1e-47 194.1 183 54.1
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 3.1e-47 192.6 121 80.2
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 5.2e-47 191.8 184 60.3
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 2.0e-46 189.9 180 54.4
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 8.3e-45 184.5 117 76.9
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 2.1e-43 179.9 103 84.5
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.7e-43 179.5 169 60.4
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 1.3e-42 177.2 200 52.5
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 6.6e-42 174.9 158 55.7
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 7.3e-41 171.4 202 52.0
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.6e-40 170.2 96 82.3
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.1e-40 169.9 168 54.2
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.4e-39 167.2 150 55.3
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 1.1e-36 157.5 107 75.7
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 9.2e-36 154.5 158 50.0
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.1e-31 141.0 149 48.3
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 5.2e-31 138.7 103 69.9
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 8.4e-29 131.3 169 45.6
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 5.1e-26 122.1 97 70.1
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 9.3e-20 101.3 78 61.5
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 1.7e-18 97.1 72 62.5
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 5.1e-18 95.5 56 78.6
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 6.6e-18 95.1 72 61.1
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 8.7e-18 94.7 193 34.7
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 1.5e-17 94.0 147 39.5
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 9.9e-14 81.3 84 53.6
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 8.4e-13 78.2 95 46.3
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 9.3e-12 74.7 62 64.5
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 1.8e-10 70.5 40 85.0
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 5.6e-09 65.5 56 60.7
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 8.1e-08 61.6 38 73.7


User provided reference genes

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