Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0332851 Rosa chinensis HOM05D004107 ORTHO05D004738 5.7e-39 163.7 78 100.0
RcHm_v2.0_Chr6g0297111 Rosa chinensis HOM05D004107 ORTHO05D004738 5.7e-39 163.7 78 100.0
RcHm_v2.0_Chr5g0003431 Rosa chinensis HOM05D004107 ORTHO05D004738 1.3e-22 109.4 60 85.0
FvH4_3g02300 Fragaria vesca HOM05D004107 ORTHO05D004738 2.8e-22 108.2 60 86.7
FAN25G2291 Fragaria x ananassa HOM05D004107 ORTHO05D004738 2.8e-22 108.2 60 86.7
RcHm_v2.0_Chr5g0003451 Rosa chinensis HOM05D004107 ORTHO05D004738 2.8e-22 108.2 60 86.7
RcHm_v2.0_Chr5g0003481 Rosa chinensis HOM05D004107 ORTHO05D004738 2.8e-22 108.2 69 78.3
Prupe.4G022500 Prunus persica HOM05D004107 ORTHO05D004738 3.7e-22 107.8 60 86.7
Atru.chr10.2206 Acer truncatum HOM05D004107 ORTHO05D004738 8.3e-22 106.7 60 85.0
arahy.Tifrunner.gnm1.ann1.1W8BNJ Arachis hypogaea HOM05D004107 ORTHO05D004738 8.3e-22 106.7 60 85.0
arahy.Tifrunner.gnm1.ann1.G9MXMR Arachis hypogaea HOM05D004107 ORTHO05D004738 8.3e-22 106.7 60 85.0
CiPaw.04G022400 Carya illinoinensis HOM05D004107 ORTHO05D004738 8.3e-22 106.7 60 85.0
Ca_09479_v3 Cicer arietinum L. HOM05D004107 ORTHO05D004738 8.3e-22 106.7 60 85.0
Glyma.13G163700 Glycine max HOM05D004107 ORTHO05D004738 8.3e-22 106.7 60 85.0
Glyma.17G107200 Glycine max HOM05D004107 ORTHO05D004738 8.3e-22 106.7 60 85.0
Lj5g0005763 Lotus japonicus HOM05D004107 ORTHO05D004738 8.3e-22 106.7 60 85.0
Lalb_Chr23g0269471 Lupinus albus HOM05D004107 ORTHO05D004738 8.3e-22 106.7 60 85.0
Manes.16G008200 Manihot esculenta HOM05D004107 ORTHO05D004738 8.3e-22 106.7 60 83.3
Medtr8g019500 Medicago truncatula HOM05D004107 ORTHO05D004738 8.3e-22 106.7 60 85.0
Phvul.003G172700 Phaseolus vulgaris HOM05D004107 ORTHO05D004738 8.3e-22 106.7 60 85.0
TPR.G39070 Trifolium pratense HOM05D004107 ORTHO05D004738 8.3e-22 106.7 60 85.0
VMungo1215G1910 Vigna mungo HOM05D000103 ORTHO05D000049 8.3e-22 106.7 60 85.0
Cfa007474 Carpinus fangiana HOM05D004107 ORTHO05D004738 1.1e-21 106.3 60 83.3
Haze_14623 Corylus avellana HOM05D004107 ORTHO05D004738 1.1e-21 106.3 60 83.3
Lalb_Chr11g0064371 Lupinus albus HOM05D004107 ORTHO05D004738 1.1e-21 106.3 60 83.3
Medtr7g030030 Medicago truncatula HOM05D004107 ORTHO05D004738 1.1e-21 106.3 60 85.0
Medtr7g038720 Medicago truncatula HOM05D004107 ORTHO05D004738 1.1e-21 106.3 60 85.0
Potri.004G016900 Populus trichocarpa HOM05D004107 ORTHO05D004738 1.1e-21 106.3 60 83.3
Psat3g165680 Pisum sativum HOM05D004107 ORTHO05D004738 1.4e-21 105.9 60 83.3
ClCG03G004800 Citrullus lanatus HOM05D004107 ORTHO05D004738 1.8e-21 105.5 60 83.3
MELO3C002463.2 Cucumis melo HOM05D004107 ORTHO05D004738 1.8e-21 105.5 60 83.3
CsaV3_1G010840 Cucumis sativus L. HOM05D004107 ORTHO05D004738 1.8e-21 105.5 60 83.3
Dinv13883 Davidia involucrata HOM05D004107 ORTHO05D004738 1.8e-21 105.5 60 83.3
Eucgr.E04076 Eucalyptus grandis HOM05D004107 ORTHO05D004738 1.8e-21 105.5 60 83.3
Hma1.2p1_0558F.1_g178480 Hydrangea macrophylla HOM05D004107 ORTHO05D004738 1.8e-21 105.5 60 83.3
Sabra04G0009200 Salix brachista HOM05D004107 ORTHO05D004738 1.8e-21 105.5 57 86.0
GSVIVG01012742001 Vitis vinifera HOM05D004107 ORTHO05D004738 1.8e-21 105.5 60 83.3
CANSAT56G3413 Cannabis sativa HOM05D004107 ORTHO05D004738 2.4e-21 105.1 60 83.3
Cpa.g.sc198.44 Carica papaya HOM05D004107 ORTHO05D004738 2.4e-21 105.1 60 81.7
CiPaw.03G033800 Carya illinoinensis HOM05D004107 ORTHO05D004738 2.4e-21 105.1 60 83.3
Ciclev10014785m.g Citrus clementina HOM05D004107 ORTHO05D004738 2.4e-21 105.1 60 81.7
MD05G1344000 Malus domestica HOM05D004107 ORTHO05D004738 2.4e-21 105.1 60 83.3
QL02p078433 Quercus lobata HOM05D004107 ORTHO05D004738 2.4e-21 105.1 60 83.3
Sed0003265 Sechium edule HOM05D004107 ORTHO05D004738 2.4e-21 105.1 60 83.3
Sed0011656 Sechium edule HOM05D004107 ORTHO05D004738 2.4e-21 105.1 60 83.3
TAR627G0615 Trochodendron aralioides HOM05D004107 ORTHO05D004738 2.4e-21 105.1 60 81.7
VMungo0251G0494 Vigna mungo HOM05D004107 ORTHO05D004738 2.4e-21 105.1 60 83.3
EL10Ac3g05771 Beta vulgaris HOM05D004107 ORTHO05D004738 3.1e-21 104.8 60 81.7
COL.COLO4_31757 Corchorus olitorius HOM05D004107 ORTHO05D004738 3.1e-21 104.8 60 81.7
Duzib192G0236 Durio zibethinus HOM05D004107 ORTHO05D004738 3.1e-21 104.8 60 81.7
Gohir.A05G169500 Gossypium hirsutum HOM05D004107 ORTHO05D004738 3.1e-21 104.8 60 81.7
Gohir.D05G172700 Gossypium hirsutum HOM05D004107 ORTHO05D004738 3.1e-21 104.8 60 81.7
Gorai.009G177900 Gossypium raimondii HOM05D004107 ORTHO05D004738 3.1e-21 104.8 60 81.7
Oeu002728.1 Olea europaea HOM05D004107 ORTHO05D004738 3.1e-21 104.8 60 81.7
Thecc.06G087700 Theobroma cacao HOM05D004107 ORTHO05D004738 3.1e-21 104.8 60 81.7
Thecc.06G219000 Theobroma cacao HOM05D004107 ORTHO05D004738 3.1e-21 104.8 60 81.7
Hund21401 Selenicereus undatus HOM05D004107 ORTHO05D004738 4.1e-21 104.4 60 81.7
Actinidia11849 Actinidia chinensis HOM05D004107 ORTHO05D004738 5.4e-21 104.0 60 81.7
CSS0040304 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 5.4e-21 104.0 60 81.7
AUR62012688 Chenopodium quinoa HOM05D004107 ORTHO05D004738 5.4e-21 104.0 60 81.7
AUR62021968 Chenopodium quinoa HOM05D004107 ORTHO05D004738 5.4e-21 104.0 60 81.7
PGR042G1667 Punica granatum HOM05D004107 ORTHO05D004738 5.4e-21 104.0 60 81.7
MSTRG.7222 Avicennia marina HOM05D004107 ORTHO05D004738 7.0e-21 103.6 60 81.7
Migut.M01308 Erythranthe guttata HOM05D004107 ORTHO05D004738 7.0e-21 103.6 60 81.7
vmacro15813 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 7.0e-21 103.6 72 70.8
Ah.07g208390 Amaranthus hybridus HOM05D004107 ORTHO05D004738 9.1e-21 103.2 60 80.0
DCAR_008142 Daucus carota HOM05D004107 ORTHO05D004738 9.1e-21 103.2 56 85.7
Nitab4.5_0003254g0100 Nicotiana tabacum HOM05D004107 ORTHO05D004738 9.1e-21 103.2 60 81.7
Nitab4.5_0006137g0030 Nicotiana tabacum HOM05D004107 ORTHO05D004738 9.1e-21 103.2 60 81.7
SalBow8G0975 Salvia bowleyana HOM05D004107 ORTHO05D004738 9.1e-21 103.2 60 81.7
Solyc02g080440.3 Solanum lycopersicum HOM05D004107 ORTHO05D004738 9.1e-21 103.2 60 81.7
Sopen02g025130 Solanum pennellii HOM05D004107 ORTHO05D004738 9.1e-21 103.2 60 81.7
Nitab4.5_0003343g0020 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.2e-20 102.8 56 85.7
Nitab4.5_0009691g0010 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.2e-20 102.8 56 85.7
Solyc03g031700.4 Solanum lycopersicum HOM05D004107 ORTHO05D004738 1.2e-20 102.8 56 85.7
Sopen03g005570 Solanum pennellii HOM05D004107 ORTHO05D004738 1.2e-20 102.8 56 85.7
vmacro10117 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 1.2e-20 102.8 60 80.0
CAN.G569.15 Capsicum annuum HOM05D004107 ORTHO05D004738 1.6e-20 102.4 60 80.0
ECA248G0760 Erigeron canadensis HOM05D004107 ORTHO05D004738 1.6e-20 102.4 60 80.0
HanXRQChr01g0004241 Helianthus annuus HOM05D004107 ORTHO05D004738 1.6e-20 102.4 60 80.0
Lsat_1_v5_gn_1_128700 Lactuca sativa HOM05D004107 ORTHO05D004738 1.6e-20 102.4 60 80.0
Oeu033892.1 Olea europaea HOM05D004107 ORTHO05D004738 1.6e-20 102.4 60 80.0
TAR629G1093 Trochodendron aralioides HOM05D004107 ORTHO05D004738 1.6e-20 102.4 60 78.3
unitig_748.g7575 Utricularia gibba HOM05D004107 ORTHO05D004738 1.6e-20 102.4 60 80.0
Rhsim02G0109900 Rhododendron simsii HOM05D004107 ORTHO05D004738 2.7e-20 101.7 60 78.3
PGSC0003DMG400005080 Solanum tuberosum HOM05D004107 ORTHO05D004738 2.7e-20 101.7 56 83.9
PGSC0003DMG400016484 Solanum tuberosum HOM05D004107 ORTHO05D004738 2.7e-20 101.7 60 80.0
Peaxi162Scf00079g01510 Petunia axillaris HOM05D004107 ORTHO05D004738 3.5e-20 101.3 56 83.9
Peaxi162Scf00853g00314 Petunia axillaris HOM05D004107 ORTHO05D004738 3.5e-20 101.3 56 83.9
CSS0008972 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 4.5e-20 100.9 58 79.3
Cc01_g06630 Coffea canephora HOM05D004107 ORTHO05D004738 4.5e-20 100.9 60 80.0
Rhsim02G0109300 Rhododendron simsii HOM05D004107 ORTHO05D004738 4.5e-20 100.9 56 82.1
TWI38G1857 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 5.9e-20 100.5 60 78.3
MSTRG.15982 Avicennia marina HOM05D004107 ORTHO05D004738 7.7e-20 100.1 60 80.0
TWI63G0549 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 7.7e-20 100.1 60 76.7
Lj1A1229G40 Lonicera japonica HOM05D004107 ORTHO05D004738 1.3e-19 99.4 75 65.3
THA.LOC104813092 Tarenaya hassleriana HOM05D004107 ORTHO05D004738 1.3e-19 99.4 60 76.7
AL6G48260 Arabidopsis lyrata HOM05D004107 ORTHO05D004738 3.8e-19 97.8 60 73.3
AT4G04770 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 3.8e-19 97.8 60 73.3
BcaB01g01836 Brassica carinata HOM05D004107 ORTHO05D004738 3.8e-19 97.8 60 73.3
BcaC04g21323 Brassica carinata HOM05D004107 ORTHO05D004738 3.8e-19 97.8 60 73.3
A09p26110 Brassica napus HOM05D004107 ORTHO05D004738 3.8e-19 97.8 60 73.3
C09p33150 Brassica napus HOM05D004107 ORTHO05D004738 3.8e-19 97.8 60 73.3
BolC9t56149H Brassica oleracea HOM05D004107 ORTHO05D004738 3.8e-19 97.8 60 73.3
BraA09t38178Z Brassica rapa HOM05D004107 ORTHO05D004738 3.8e-19 97.8 60 73.3
Carub.0006s3269 Capsella rubella HOM05D004107 ORTHO05D004738 3.8e-19 97.8 60 73.3
CARHR252770 Cardamine hirsuta HOM05D004107 ORTHO05D004738 3.8e-19 97.8 60 73.3
Thhalv10028516m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 3.8e-19 97.8 60 73.3
Sp6g04170 Schrenkiella parvula HOM05D004107 ORTHO05D004738 3.8e-19 97.8 60 73.3
VMungo1215G1998 Vigna mungo HOM05D004107 ORTHO05D004738 5.0e-19 97.4 60 80.0
Aa31LG9G9700 Aethionema arabicum HOM05D004107 ORTHO05D004738 6.6e-19 97.1 60 73.3
AT5G44316 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 6.6e-19 97.1 60 75.0
Aqoxy1G02185 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.9e-18 95.5 60 73.3
CARHR107510 Cardamine hirsuta HOM05D004107 ORTHO05D004738 1.9e-18 95.5 60 73.3
CDE07G0300 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 1.9e-18 95.5 60 73.3
CDE06G1524 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 2.5e-18 95.1 60 73.3
HanXRQChr11g0323581 Helianthus annuus HOM05D004107 ORTHO05D004738 2.5e-18 95.1 60 76.7
Nn004s41401 Nelumbo nucifera HOM05D000561 ORTHO05D000514 3.3e-18 94.7 56 76.8
Sc05g0009110 Simmondsia chinensis HOM05D004107 ORTHO05D004738 3.3e-18 94.7 60 73.3
Atru.chr8.686 Acer truncatum HOM05D004107 ORTHO05D004738 5.5e-18 94.0 59 74.6
MBI02_g22110_MAGBIO Magnolia biondii HOM05D004107 ORTHO05D004738 7.2e-18 93.6 60 73.3
ATR0772G029 Amborella trichopoda HOM05D004107 ORTHO05D004738 6.1e-17 90.5 60 70.0
vmacro09067 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 1.0e-16 89.7 57 77.2
Mapoly0043s0049 Marchantia polymorpha HOM05D004107 ORTHO05D004738 1.8e-16 89.0 60 70.0
SEGI_39818 Sequoiadendron giganteum HOM05D004107 ORTHO05D004738 2.3e-16 88.6 60 70.0
Pp3c1_9330 Physcomitrium patens HOM05D004107 ORTHO05D004738 8.9e-16 86.7 60 68.3
Pp3c2_37190 Physcomitrium patens HOM05D004107 ORTHO05D004738 8.9e-16 86.7 60 68.3
SHI00520 Sapria himalayana HOM05D004107 ORTHO05D004738 1.2e-15 86.3 57 73.7
CBR_g37549 Chara braunii HOM05D004107 ORTHO05D004738 1.5e-15 85.9 60 66.7
Duzib211G0221 Durio zibethinus HOM05D004107 ORTHO05D004738 1.5e-15 85.9 57 73.7
Psat0s2739g0040 Pisum sativum HOM05D004107 ORTHO05D004738 2.0e-15 85.5 56 71.4
Psat0s2739g0120 Pisum sativum HOM05D004107 ORTHO05D004738 2.0e-15 85.5 56 71.4
Rhsim04G0103400 Rhododendron simsii HOM05D004107 ORTHO05D004738 2.6e-15 85.1 60 71.7
AagrBONN_evm.TU.Sc2ySwM_344.3731 Anthoceros agrestis HOM05D004107 ORTHO05D004738 3.4e-15 84.7 60 65.0
SMO118G0281 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 3.4e-15 84.7 60 66.7
Hund23481 Selenicereus undatus HOM05D004107 ORTHO05D004738 4.4e-15 84.3 57 73.7
MCO07G339 Micromonas commoda HOM05D004107 ORTHO05D004738 1.7e-14 82.4 60 65.0
PRCOL_00000395 Prasinoderma coloniale HOM05D004107 ORTHO05D004738 2.9e-14 81.6 60 61.7
Cre15.g643600 Chlamydomonas reinhardtii HOM05D004107 ORTHO05D004738 3.7e-14 81.3 60 65.0
TAR624G0013 Trochodendron aralioides HOM05D004107 ORTHO05D004738 6.3e-14 80.5 53 71.7
Os01g0830000 Oryza sativa ssp. japonica HOM05D004107 ORTHO05D004738 1.1e-13 79.7 50 72.0
Actinidia04354 Actinidia chinensis HOM05D004107 ORTHO05D004738 2.4e-13 78.6 60 65.0
PSO541G4368 Papaver somniferum HOM05D004107 ORTHO05D004738 5.4e-13 77.4 60 56.7
PSO675G6282 Papaver somniferum HOM05D004107 ORTHO05D004738 5.4e-13 77.4 60 56.7
C02p40090 Brassica napus HOM05D004107 ORTHO05D004738 5.9e-12 73.9 57 59.6
BolC2t10037H Brassica oleracea HOM05D004107 ORTHO05D004738 7.8e-12 73.6 57 59.6
Aqoxy1G02187 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 3.9e-11 71.2 57 56.1
EL10Ac8g18634 Beta vulgaris HOM05D004107 ORTHO05D004738 5.0e-11 70.9 60 55.0
A02p25270 Brassica napus HOM05D004107 ORTHO05D004738 6.6e-11 70.5 57 56.1
BraA02t07514Z Brassica rapa HOM05D004107 ORTHO05D004738 7.3e-10 67.0 55 54.5
VMungo1383G1914 Vigna mungo HOM05D004107 ORTHO05D004738 8.0e-09 63.5 34 85.3
SMO347G0487 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 4.0e-08 61.2 54 48.1
RcHm_v2.0_Chr5g0003411 Rosa chinensis HOM05D004107 ORTHO05D004738 8.9e-08 60.1 34 82.4
CSS0026740 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 1.5e-07 59.3 58 51.7
Haze_26807 Corylus avellana HOM05D004107 ORTHO05D004738 2.0e-07 58.9 54 51.9
Thhalv10022515m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 4.4e-07 57.8 46 56.5
Pp3c25_3020 Physcomitrium patens HOM05D004107 ORTHO05D004738 7.5e-07 57.0 65 38.5


User provided reference genes

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