Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 0.0e+00 1076.2 583 100.0
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.3e-192 675.6 578 64.2
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 5.9e-189 664.8 571 64.6
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.8e-183 646.0 556 64.6
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.4e-176 622.5 549 63.8
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.7e-175 619.0 556 62.6
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 2.2e-79 300.8 668 35.9
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 3.9e-76 290.0 507 39.8
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.8e-71 273.5 652 39.4
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 9.7e-67 258.8 656 39.6
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 1.6e-56 224.9 443 37.9
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 1.4e-49 201.8 480 35.8
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 1.2e-45 188.7 455 34.5
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 1.7e-42 178.3 604 30.1
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 5.9e-40 169.9 562 31.3
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 4.7e-37 160.2 212 44.3
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 1.3e-34 152.1 237 41.4
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 5.4e-33 146.7 503 29.4
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 7.8e-32 142.9 440 29.8
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 7.8e-32 142.9 206 42.7
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.1e-30 139.0 591 27.4
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.8e-28 131.7 201 43.3
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 3.1e-28 131.0 631 28.5
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.2e-27 129.0 535 29.3
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 1.2e-27 129.0 406 27.6
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 8.3e-26 122.9 321 33.3
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 7.1e-25 119.8 246 33.7
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 9.2e-25 119.4 364 30.5
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 1.6e-24 118.6 326 34.0
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 2.3e-23 114.8 399 29.1
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 5.1e-23 113.6 277 34.3
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.1e-22 112.5 170 41.2
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 1.1e-22 112.5 114 52.6
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 1.9e-22 111.7 348 29.6
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 7.3e-22 109.8 406 28.1
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 9.5e-22 109.4 336 30.4
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 2.1e-21 108.2 405 28.9
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 3.6e-21 107.5 364 29.1
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 4.7e-21 107.1 182 39.6
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 1.4e-20 105.5 243 33.7
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.8e-20 105.1 112 50.9
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 4.0e-20 104.0 201 35.8
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 6.8e-20 103.2 416 28.1
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 1.2e-19 102.4 265 35.5
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.5e-19 102.1 127 44.1
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.8e-19 100.1 398 27.9
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 5.8e-19 100.1 200 34.5
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 9.9e-19 99.4 407 28.0
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.3e-18 99.0 400 27.8
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 1.3e-18 99.0 118 44.1
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.9e-18 97.8 164 37.8
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 6.4e-18 96.7 313 32.3
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 8.4e-18 96.3 204 35.8
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 1.9e-17 95.1 410 28.5
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 3.2e-17 94.4 420 26.9
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.2e-16 92.4 147 40.1
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 1.2e-16 92.4 114 45.6
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.7e-16 91.3 153 38.6
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 2.7e-16 91.3 155 37.4
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 3.5e-16 90.9 434 24.7
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 6.0e-16 90.1 442 26.7
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 7.8e-16 89.7 405 27.2
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 1.0e-15 89.4 219 32.9
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.3e-15 89.0 113 43.4
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 1.7e-15 88.6 401 25.7
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 1.7e-15 88.6 197 33.5
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 5.1e-15 87.0 146 37.0
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 6.6e-15 86.7 426 25.6
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 8.6e-15 86.3 205 36.1
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 1.1e-14 85.9 146 37.7
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 1.5e-14 85.5 118 40.7
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 2.5e-14 84.7 331 28.7
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 2.5e-14 84.7 263 28.9
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 3.3e-14 84.3 418 26.6
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 3.3e-14 84.3 218 30.7
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 3.3e-14 84.3 428 23.4
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 4.3e-14 84.0 416 25.5
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 5.6e-14 83.6 146 37.0
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 5.6e-14 83.6 167 35.9
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 7.3e-14 83.2 413 24.9
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 9.6e-14 82.8 150 39.3
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 9.6e-14 82.8 471 26.5
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.2e-13 82.4 154 36.4
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.6e-13 82.0 246 30.5
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 2.8e-13 81.3 273 28.9
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.8e-13 81.3 153 35.3
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 3.6e-13 80.9 396 28.0
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 4.7e-13 80.5 156 35.3
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 4.7e-13 80.5 151 34.4
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 6.2e-13 80.1 125 37.6
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 6.2e-13 80.1 403 25.8
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.1e-12 79.3 221 29.9
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 1.4e-12 79.0 119 39.5
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.4e-12 79.0 446 25.3
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 1.8e-12 78.6 293 29.7
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.4e-12 78.2 437 25.4
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 2.4e-12 78.2 77 45.5
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 3.1e-12 77.8 406 26.4
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 4.0e-12 77.4 261 28.7
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 4.0e-12 77.4 155 36.1
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 5.2e-12 77.0 188 30.9
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 5.2e-12 77.0 172 29.7
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 5.2e-12 77.0 493 24.7
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 6.9e-12 76.6 458 27.1
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 1.2e-11 75.9 119 40.3
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 1.2e-11 75.9 119 40.3
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 1.2e-11 75.9 242 27.7
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 1.5e-11 75.5 140 36.4
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 1.5e-11 75.5 285 28.1
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.5e-11 75.5 117 36.8
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 1.5e-11 75.5 465 24.7
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.5e-11 75.5 488 24.8
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 2.0e-11 75.1 198 29.8
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 2.6e-11 74.7 155 36.1
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 3.4e-11 74.3 220 30.9
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 3.4e-11 74.3 405 24.9
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 4.4e-11 73.9 264 28.4
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 7.6e-11 73.2 382 26.4
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 7.6e-11 73.2 106 41.5
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 1.3e-10 72.4 395 23.3
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 1.3e-10 72.4 120 39.2
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 1.3e-10 72.4 415 23.6
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 1.7e-10 72.0 220 30.5
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 1.7e-10 72.0 41 65.9
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.2e-10 71.6 483 24.8
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 2.2e-10 71.6 363 25.1
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 2.9e-10 71.2 206 28.2
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 3.8e-10 70.9 324 29.3
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 3.8e-10 70.9 105 38.1
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 3.8e-10 70.9 388 27.1
FvH4_2g27970 Fragaria vesca HOM05D006236 ORTHO05D003486 4.9e-10 70.5 341 28.7
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 8.4e-10 69.7 96 42.7
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 1.1e-09 69.3 179 27.9
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 1.4e-09 68.9 286 28.3
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 1.4e-09 68.9 130 29.2
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.4e-09 68.9 105 39.0
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 2.4e-09 68.2 305 26.9
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 2.4e-09 68.2 305 26.9
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 2.4e-09 68.2 179 27.4
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 3.2e-09 67.8 112 32.1
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 3.2e-09 67.8 112 32.1
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 3.2e-09 67.8 305 26.9
TAR381G0115 Trochodendron aralioides HOM05D006236 ORTHO05D003486 4.2e-09 67.4 334 24.6
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 5.4e-09 67.0 305 26.9
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 7.1e-09 66.6 482 23.0
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 7.1e-09 66.6 405 24.7
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 7.1e-09 66.6 161 29.8
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 1.2e-08 65.9 401 21.9
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 1.6e-08 65.5 112 31.2
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.6e-08 65.5 112 31.2
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 2.1e-08 65.1 388 23.2
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 4.6e-08 63.9 174 31.6
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 6.0e-08 63.5 115 33.9
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 6.0e-08 63.5 115 33.9
Cpa.g.sc1156.1 Carica papaya HOM05D029276 ORTHO05D003486 1.0e-07 62.8 273 24.9
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 1.0e-07 62.8 153 30.7
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 1.3e-07 62.4 340 24.1
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 1.3e-07 62.4 112 33.9
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 1.3e-07 62.4 101 32.7
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 2.3e-07 61.6 157 28.0
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.1e-06 59.3 112 30.4
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 1.1e-06 59.3 102 35.3
Peaxi162Scf00066g00424 Petunia axillaris HOM05D020480 ORTHO05D003486 1.5e-06 58.9 41 43.9
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 1.9e-06 58.5 105 34.3
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 3.3e-06 57.8 399 23.3
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 4.3e-06 57.4 399 23.3
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 4.3e-06 57.4 399 23.3
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 4.3e-06 57.4 128 32.0
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 4.3e-06 57.4 122 29.5
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 4.3e-06 57.4 116 28.4
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 7.3e-06 56.6 269 24.5
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 9.6e-06 56.2 134 31.3
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 9.6e-06 56.2 459 24.0


User provided reference genes

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