Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0296131 Rosa chinensis HOM05D021820 ORTHO05D029631 1.1e-66 256.5 131 100.0
FvH4_2g27320 Fragaria vesca HOM05D014919 ORTHO05D029631 2.6e-52 208.8 127 83.5
FAN15G2844 Fragaria x ananassa HOM05D014919 ORTHO05D029631 3.4e-52 208.4 127 82.7
FAN24G0449 Fragaria x ananassa HOM05D014919 ORTHO05D029631 1.3e-51 206.5 127 82.7
Prupe.7G138400 Prunus persica HOM05D000046 ORTHO05D025806 1.9e-18 96.3 123 43.1
FvH4_2g27330 Fragaria vesca HOM05D014919 ORTHO05D035675 7.9e-17 90.9 123 43.9
Prupe.5G127900 Prunus persica HOM05D000529 ORTHO05D012517 6.7e-16 87.8 117 41.9
MD06G1115200 Malus domestica HOM05D000081 ORTHO05D000036 1.1e-15 87.0 114 43.9
MD06G1116000 Malus domestica HOM05D000054 ORTHO05D000286 1.1e-15 87.0 117 43.6
RcHm_v2.0_Chr2g0104171 Rosa chinensis HOM05D000529 ORTHO05D000472 1.1e-15 87.0 126 38.1
FvH4_1g15330 Fragaria vesca HOM05D000529 ORTHO05D000472 7.4e-15 84.3 123 39.8
FAN19G2660 Fragaria x ananassa HOM05D000529 ORTHO05D000472 7.4e-15 84.3 123 39.8
FvH4_1g15120 Fragaria vesca HOM05D000529 ORTHO05D000472 9.6e-15 84.0 115 40.0
RcHm_v2.0_Chr2g0104561 Rosa chinensis HOM05D000046 ORTHO05D025806 9.6e-15 84.0 122 41.8
RcHm_v2.0_Chr7g0186631 Rosa chinensis HOM05D008495 ORTHO05D017958 9.6e-15 84.0 122 40.2
Prupe.5G127700 Prunus persica HOM05D000529 ORTHO05D010311 1.6e-14 83.2 117 40.2
RcHm_v2.0_Chr2g0104611 Rosa chinensis HOM05D000046 ORTHO05D000472 1.6e-14 83.2 124 41.1
RcHm_v2.0_Chr7g0186691 Rosa chinensis HOM05D000529 ORTHO05D012517 2.1e-14 82.8 120 40.8
FvH4_7g12080 Fragaria vesca HOM05D021820 ORTHO05D025535 3.7e-14 82.0 96 49.0
FAN06G4887 Fragaria x ananassa HOM05D021820 ORTHO05D025535 3.7e-14 82.0 96 49.0
FAN10G3811 Fragaria x ananassa HOM05D021820 ORTHO05D025535 3.7e-14 82.0 96 49.0
RcHm_v2.0_Chr2g0104741 Rosa chinensis HOM05D000529 ORTHO05D000472 3.7e-14 82.0 117 37.6
FAN26G3207 Fragaria x ananassa HOM05D000529 ORTHO05D000472 6.3e-14 81.3 111 38.7
FAN06G2372 Fragaria x ananassa HOM05D021820 ORTHO05D025535 8.2e-14 80.9 96 47.9
MD06G1115400 Malus domestica HOM05D000529 ORTHO05D025806 8.2e-14 80.9 117 38.5
FAN10G3193 Fragaria x ananassa HOM05D021820 ORTHO05D025535 1.4e-13 80.1 61 65.6
FAN26G0958 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.4e-13 80.1 125 40.0
RcHm_v2.0_Chr2g0104831 Rosa chinensis HOM05D000083 ORTHO05D002708 1.4e-13 80.1 117 39.3
FAN28G0579 Fragaria x ananassa HOM05D008495 ORTHO05D010311 3.1e-13 79.0 115 40.0
RcHm_v2.0_Chr2g0104181 Rosa chinensis HOM05D000529 ORTHO05D000472 6.9e-13 77.8 126 33.3
FvH4_5g11100 Fragaria vesca HOM05D000248 ORTHO05D000146 9.0e-13 77.4 123 37.4
FAN27G2068 Fragaria x ananassa HOM05D014919 ORTHO05D207760 9.0e-13 77.4 96 45.8
RcHm_v2.0_Chr2g0104191 Rosa chinensis HOM05D000529 ORTHO05D000472 1.2e-12 77.0 127 38.6
RcHm_v2.0_Chr3g0480561 Rosa chinensis HOM05D000529 ORTHO05D000472 2.0e-12 76.3 117 41.0
FvH4_7g14830 Fragaria vesca HOM05D000166 ORTHO05D001532 2.6e-12 75.9 122 33.6
FAN06G0627 Fragaria x ananassa HOM05D000166 ORTHO05D001532 2.6e-12 75.9 122 33.6
MD02G1022000 Malus domestica HOM05D008495 ORTHO05D025806 2.6e-12 75.9 122 36.9
FAN18G3118 Fragaria x ananassa HOM05D000248 ORTHO05D000146 3.4e-12 75.5 123 37.4
MD15G1278700 Malus domestica HOM05D000046 ORTHO05D025806 3.4e-12 75.5 123 35.8
RcHm_v2.0_Chr2g0104381 Rosa chinensis HOM05D000529 ORTHO05D000472 3.4e-12 75.5 120 35.0
RcHm_v2.0_Chr2g0104761 Rosa chinensis HOM05D000529 ORTHO05D000472 3.4e-12 75.5 117 39.3
MD02G1021700 Malus domestica HOM05D000041 ORTHO05D001532 4.5e-12 75.1 121 37.2
RcHm_v2.0_Chr2g0104391 Rosa chinensis HOM05D000529 ORTHO05D000472 5.9e-12 74.7 117 40.2
FvH4_5g11210 Fragaria vesca HOM05D000248 ORTHO05D000146 7.6e-12 74.3 123 36.6
Prupe.5G127600 Prunus persica HOM05D000529 ORTHO05D010311 7.6e-12 74.3 117 35.9
FAN13G2367 Fragaria x ananassa HOM05D000248 ORTHO05D000146 2.2e-11 72.8 122 34.4
Prupe.7G139800 Prunus persica HOM05D000529 ORTHO05D000472 2.2e-11 72.8 115 34.8
RcHm_v2.0_Chr2g0102741 Rosa chinensis HOM05D001084 ORTHO05D001275 2.9e-11 72.4 117 39.3
FAN26G0747 Fragaria x ananassa HOM05D001563 ORTHO05D000761 3.8e-11 72.0 117 38.5
FAN13G0044 Fragaria x ananassa HOM05D000529 ORTHO05D012517 5.0e-11 71.6 114 36.8
FAN23G2222 Fragaria x ananassa HOM05D000529 ORTHO05D000472 5.0e-11 71.6 112 39.3
FAN28G0376 Fragaria x ananassa HOM05D000529 ORTHO05D000472 5.0e-11 71.6 117 38.5
FAN28G1580 Fragaria x ananassa HOM05D000529 ORTHO05D000472 5.0e-11 71.6 117 38.5
FvH4_1g15230 Fragaria vesca HOM05D000529 ORTHO05D000472 6.5e-11 71.2 117 38.5
FAN13G0015 Fragaria x ananassa HOM05D000248 ORTHO05D012517 6.5e-11 71.2 114 36.8
FAN13G0180 Fragaria x ananassa HOM05D000248 ORTHO05D000146 6.5e-11 71.2 114 36.8
FAN13G1491 Fragaria x ananassa HOM05D000248 ORTHO05D000146 6.5e-11 71.2 114 36.8
FAN13G1701 Fragaria x ananassa HOM05D000248 ORTHO05D000146 6.5e-11 71.2 114 36.8
FAN13G1884 Fragaria x ananassa HOM05D000248 ORTHO05D000146 6.5e-11 71.2 114 36.8
FAN13G2003 Fragaria x ananassa HOM05D000248 ORTHO05D000146 6.5e-11 71.2 114 36.8
FAN13G2246 Fragaria x ananassa HOM05D000248 ORTHO05D000146 6.5e-11 71.2 114 36.8
FAN13G2559 Fragaria x ananassa HOM05D000248 ORTHO05D000146 6.5e-11 71.2 114 36.8
FAN13G2794 Fragaria x ananassa HOM05D000248 ORTHO05D000146 6.5e-11 71.2 114 36.8
FAN13G3019 Fragaria x ananassa HOM05D000248 ORTHO05D000146 6.5e-11 71.2 114 36.8
FAN13G3219 Fragaria x ananassa HOM05D000248 ORTHO05D000146 6.5e-11 71.2 114 36.8
FAN18G3298 Fragaria x ananassa HOM05D000248 ORTHO05D012517 1.1e-10 70.5 115 38.3
FAN19G2597 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.1e-10 70.5 117 37.6
FAN23G2757 Fragaria x ananassa HOM05D000529 ORTHO05D010311 1.1e-10 70.5 115 35.7
FvH4_1g15500 Fragaria vesca HOM05D000529 ORTHO05D000472 1.4e-10 70.1 116 37.1
FvH4_1g13660 Fragaria vesca HOM05D001084 ORTHO05D001275 1.9e-10 69.7 117 39.3
FAN24G3544 Fragaria x ananassa HOM05D014919 ORTHO05D035675 3.2e-10 68.9 76 50.0
RcHm_v2.0_Chr2g0143661 Rosa chinensis HOM05D003771 ORTHO05D010311 3.2e-10 68.9 120 32.5
RcHm_v2.0_Chr2g0104431 Rosa chinensis HOM05D000529 ORTHO05D000472 4.2e-10 68.6 117 38.5
RcHm_v2.0_Chr7g0186621 Rosa chinensis HOM05D000529 ORTHO05D000628 4.2e-10 68.6 129 33.3
RcHm_v2.0_Chr1g0373981 Rosa chinensis HOM05D000614 ORTHO05D000463 5.5e-10 68.2 115 34.8
FvH4_1g15170 Fragaria vesca HOM05D000529 ORTHO05D000472 7.2e-10 67.8 112 38.4
FAN13G2602 Fragaria x ananassa HOM05D000248 ORTHO05D017958 9.3e-10 67.4 114 33.3
FvH4_5g11120 Fragaria vesca HOM05D000248 ORTHO05D017958 1.6e-09 66.6 114 32.5
FvH4_5g11230 Fragaria vesca HOM05D000248 ORTHO05D017958 1.6e-09 66.6 114 32.5
FAN18G1596 Fragaria x ananassa HOM05D000248 ORTHO05D017958 2.1e-09 66.2 114 33.3
FAN18G4033 Fragaria x ananassa HOM05D000248 ORTHO05D017958 2.1e-09 66.2 114 33.3
RcHm_v2.0_Chr2g0104731 Rosa chinensis HOM05D000577 ORTHO05D003509 2.1e-09 66.2 115 37.4
FvH4_5g11090 Fragaria vesca HOM05D001011 ORTHO05D035356 2.7e-09 65.9 118 34.7
FvH4_5g11160 Fragaria vesca HOM05D008495 ORTHO05D035356 2.7e-09 65.9 118 34.7
FvH4_5g11200 Fragaria vesca HOM05D000248 ORTHO05D017958 2.7e-09 65.9 114 33.3
FvH4_5g11220 Fragaria vesca HOM05D000248 ORTHO05D017958 2.7e-09 65.9 114 33.3
FAN08G3301 Fragaria x ananassa HOM05D000248 ORTHO05D017958 2.7e-09 65.9 114 32.5
FAN23G2692 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.7e-09 65.9 115 33.0
FAN28G2498 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.7e-09 65.9 117 36.8
FvH4_1g13670 Fragaria vesca HOM05D008495 ORTHO05D012517 6.1e-09 64.7 117 37.6
FAN23G0006 Fragaria x ananassa HOM05D000529 ORTHO05D000472 6.1e-09 64.7 101 36.6
RcHm_v2.0_Chr3g0480541 Rosa chinensis HOM05D000529 ORTHO05D000472 6.1e-09 64.7 116 37.1
FAN23G1659 Fragaria x ananassa HOM05D000891 ORTHO05D000761 7.9e-09 64.3 117 36.8
Prupe.7G139500 Prunus persica HOM05D000529 ORTHO05D000472 7.9e-09 64.3 124 33.9
RcHm_v2.0_Chr7g0230551 Rosa chinensis HOM05D000529 ORTHO05D010311 7.9e-09 64.3 122 32.0
FvH4_1g15160 Fragaria vesca HOM05D000529 ORTHO05D000472 1.0e-08 63.9 119 32.8
FAN08G1641 Fragaria x ananassa HOM05D000083 ORTHO05D025348 1.0e-08 63.9 115 33.9
FAN08G3343 Fragaria x ananassa HOM05D000529 ORTHO05D010311 1.0e-08 63.9 118 33.9
FAN13G2049 Fragaria x ananassa HOM05D000306 ORTHO05D025348 1.0e-08 63.9 115 33.9
FAN19G2554 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.0e-08 63.9 119 32.8
FAN28G0545 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.0e-08 63.9 101 36.6
FAN28G0936 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.0e-08 63.9 101 36.6
RcHm_v2.0_Chr2g0102961 Rosa chinensis HOM05D000046 ORTHO05D020739 1.0e-08 63.9 105 39.0
RcHm_v2.0_Chr7g0212121 Rosa chinensis HOM05D000026 ORTHO05D001436 1.0e-08 63.9 108 33.3
FAN04G0459 Fragaria x ananassa HOM05D000529 ORTHO05D010311 1.3e-08 63.5 118 33.9
FAN18G2317 Fragaria x ananassa HOM05D008495 ORTHO05D010311 1.8e-08 63.2 118 33.9
FvH4_5g11180 Fragaria vesca HOM05D000248 ORTHO05D010311 2.3e-08 62.8 108 36.1
FAN08G0175 Fragaria x ananassa HOM05D030830 ORTHO05D035356 2.3e-08 62.8 118 33.1
RcHm_v2.0_Chr2g0104121 Rosa chinensis HOM05D000529 ORTHO05D000472 2.3e-08 62.8 123 31.7
FvH4_5g11250 Fragaria vesca HOM05D000306 ORTHO05D025348 3.0e-08 62.4 115 33.0
FvH4_1g15210 Fragaria vesca HOM05D000529 ORTHO05D000472 3.9e-08 62.0 123 33.3
FAN28G0855 Fragaria x ananassa HOM05D000529 ORTHO05D000472 3.9e-08 62.0 114 30.7
RcHm_v2.0_Chr7g0186641 Rosa chinensis HOM05D000248 ORTHO05D000146 3.9e-08 62.0 128 32.8
FvH4_5g32820 Fragaria vesca HOM05D000529 ORTHO05D010311 5.1e-08 61.6 118 33.1
FAN13G1190 Fragaria x ananassa HOM05D008495 ORTHO05D012517 5.1e-08 61.6 118 33.9
FAN18G1889 Fragaria x ananassa HOM05D000529 ORTHO05D010311 5.1e-08 61.6 118 33.1
FAN18G3041 Fragaria x ananassa HOM05D000083 ORTHO05D025348 5.1e-08 61.6 115 33.0
FAN26G2892 Fragaria x ananassa HOM05D000529 ORTHO05D000472 5.1e-08 61.6 112 37.5
MD02G1164300 Malus domestica HOM05D000529 ORTHO05D000472 5.1e-08 61.6 113 32.7
FAN04G2500 Fragaria x ananassa HOM05D008495 ORTHO05D010311 6.7e-08 61.2 118 33.9
FAN18G0367 Fragaria x ananassa HOM05D000083 ORTHO05D025348 6.7e-08 61.2 115 32.2
FvH4_1g15130 Fragaria vesca HOM05D000529 ORTHO05D000472 8.7e-08 60.8 98 36.7
FAN19G2633 Fragaria x ananassa HOM05D000529 ORTHO05D000472 8.7e-08 60.8 98 36.7
FvH4_1g15220 Fragaria vesca HOM05D000529 ORTHO05D000472 1.5e-07 60.1 115 30.4
FAN26G1753 Fragaria x ananassa HOM05D000046 ORTHO05D020739 1.5e-07 60.1 105 35.2
MD02G1164700 Malus domestica HOM05D000529 ORTHO05D000472 1.5e-07 60.1 106 33.0
MD02G1165400 Malus domestica HOM05D000529 ORTHO05D000472 1.5e-07 60.1 122 32.8
MD02G1164800 Malus domestica HOM05D000529 ORTHO05D000472 1.9e-07 59.7 123 33.3
MD02G1165600 Malus domestica HOM05D000529 ORTHO05D000472 1.9e-07 59.7 120 35.8
MD02G1166100 Malus domestica HOM05D000529 ORTHO05D000472 2.5e-07 59.3 118 33.9
Prupe.7G139600 Prunus persica HOM05D000529 ORTHO05D000472 2.5e-07 59.3 118 33.1
RcHm_v2.0_Chr7g0230541 Rosa chinensis HOM05D000529 ORTHO05D010311 2.5e-07 59.3 132 31.8
RcHm_v2.0_Chr7g0230701 Rosa chinensis HOM05D000529 ORTHO05D010311 2.5e-07 59.3 120 31.7
Prupe.7G138800 Prunus persica HOM05D000529 ORTHO05D000472 3.3e-07 58.9 123 33.3
MD02G1165300 Malus domestica HOM05D000529 ORTHO05D000472 5.7e-07 58.2 123 33.3
FvH4_1g15090 Fragaria vesca HOM05D000529 ORTHO05D000472 7.4e-07 57.8 114 34.2
MD00G1053700 Malus domestica HOM05D000529 ORTHO05D000472 7.4e-07 57.8 123 29.3
MD02G1165900 Malus domestica HOM05D000529 ORTHO05D010311 7.4e-07 57.8 123 29.3
Prupe.7G139200 Prunus persica HOM05D000529 ORTHO05D000472 7.4e-07 57.8 124 32.3
RcHm_v2.0_Chr2g0104151 Rosa chinensis HOM05D000529 ORTHO05D000472 7.4e-07 57.8 96 35.4
FvH4_7g26420 Fragaria vesca HOM05D008495 ORTHO05D046041 1.6e-06 56.6 116 29.3
MD02G1165500 Malus domestica HOM05D000529 ORTHO05D000472 2.2e-06 56.2 123 30.9
MD15G1278000 Malus domestica HOM05D000529 ORTHO05D000472 3.7e-06 55.5 122 31.1
MD15G1276900 Malus domestica HOM05D000529 ORTHO05D000472 4.8e-06 55.1 106 31.1


User provided reference genes

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