Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0295891 Rosa chinensis HOM05D007582 ORTHO05D009645 1.8e-62 242.3 109 100.0
FAN15G1067 Fragaria x ananassa HOM05D007582 ORTHO05D009645 1.9e-56 222.2 109 89.0
Prupe.1G495300 Prunus persica HOM05D007582 ORTHO05D009645 2.6e-50 201.8 112 81.2
MD15G1347500 Malus domestica HOM05D007582 ORTHO05D009645 1.3e-49 199.5 110 78.2
QL09p034466 Quercus lobata HOM05D007582 ORTHO05D009645 2.2e-49 198.7 110 80.9
CiPaw.05G221000 Carya illinoinensis HOM05D007582 ORTHO05D009645 3.8e-49 198.0 109 79.8
Haze_00435 Corylus avellana HOM05D007582 ORTHO05D009645 1.1e-45 186.4 111 74.8
Thecc.08G126100 Theobroma cacao HOM05D007582 ORTHO05D009645 1.5e-45 186.0 112 75.0
TWI34G1919 Tripterygium wilfordii HOM05D007582 ORTHO05D009645 1.5e-45 186.0 112 74.1
Duzib116G0545 Durio zibethinus HOM05D007582 ORTHO05D009645 2.6e-45 185.3 109 74.3
Potri.002G083100 Populus trichocarpa HOM05D007582 ORTHO05D009645 9.7e-45 183.3 114 71.9
ClCG08G005690 Citrullus lanatus HOM05D007582 ORTHO05D009645 2.2e-44 182.2 113 72.6
Oeu028565.1 Olea europaea HOM05D007582 ORTHO05D009645 1.4e-43 179.5 113 69.9
MELO3C010615.2 Cucumis melo HOM05D007582 ORTHO05D009645 1.8e-43 179.1 112 74.1
Lalb_Chr17g0343701 Lupinus albus HOM05D007582 ORTHO05D009645 2.4e-43 178.7 110 71.8
Solyc06g060300.1 Solanum lycopersicum HOM05D007582 ORTHO05D009645 2.4e-43 178.7 109 71.6
Sopen06g020420 Solanum pennellii HOM05D007582 ORTHO05D009645 4.1e-43 177.9 109 71.6
CAN.G1040.1 Capsicum annuum HOM05D007582 ORTHO05D009645 7.0e-43 177.2 109 70.6
Lj1g0018777 Lotus japonicus HOM05D007582 ORTHO05D009645 7.0e-43 177.2 111 70.3
Manes.02G163800 Manihot esculenta HOM05D007582 ORTHO05D009645 7.0e-43 177.2 110 70.9
PGSC0003DMG400041136 Solanum tuberosum HOM05D007582 ORTHO05D009645 1.2e-42 176.4 109 70.6
CAN.G1040.3 Capsicum annuum HOM05D007582 ORTHO05D009645 5.9e-42 174.1 109 69.7
CANSAT11G2348 Cannabis sativa HOM05D007582 ORTHO05D009645 1.3e-41 172.9 109 67.9
Manes.18G077606 Manihot esculenta HOM05D007582 ORTHO05D009645 2.2e-41 172.2 110 69.1
Nn5g28305 Nelumbo nucifera HOM05D007582 ORTHO05D009645 2.2e-41 172.2 112 70.5
Cpa.g.sc64.90 Carica papaya HOM05D007582 ORTHO05D009645 2.9e-41 171.8 114 71.1
Medtr1g029990 Medicago truncatula HOM05D007582 ORTHO05D009645 2.9e-41 171.8 111 66.7
Nitab4.5_0003719g0010 Nicotiana tabacum HOM05D007582 ORTHO05D009645 2.9e-41 171.8 111 68.5
TPR.G25776 Trifolium pratense HOM05D007582 ORTHO05D009645 2.9e-41 171.8 112 67.0
TAR381G0802 Trochodendron aralioides HOM05D007582 ORTHO05D009645 2.9e-41 171.8 110 70.9
Aqoxy6G00171 Aquilegia oxysepala HOM05D007582 ORTHO05D009645 5.0e-41 171.0 110 69.1
MSTRG.22408 Avicennia marina HOM05D007582 ORTHO05D009645 1.5e-40 169.5 109 68.8
Sc22g0004000 Simmondsia chinensis HOM05D007582 ORTHO05D009645 2.5e-40 168.7 110 66.4
Migut.N03282 Erythranthe guttata HOM05D007582 ORTHO05D009645 5.5e-40 167.5 109 69.7
Gohir.D06G045500 Gossypium hirsutum HOM05D007582 ORTHO05D009645 1.6e-39 166.0 101 73.3
THA.LOC104817375 Tarenaya hassleriana HOM05D007582 ORTHO05D009645 2.1e-39 165.6 109 66.1
AT1G44414 Arabidopsis thaliana HOM05D007582 ORTHO05D009645 3.6e-39 164.9 109 68.8
CsaV3_6G034440 Cucumis sativus L. HOM05D007582 ORTHO05D009645 3.6e-39 164.9 103 72.8
SalBow6G5334 Salvia bowleyana HOM05D007582 ORTHO05D009645 4.7e-39 164.5 109 67.9
Lj4P628T29 Lonicera japonica HOM05D007582 ORTHO05D009645 6.1e-39 164.1 110 70.9
Peaxi162Scf00051g00105 Petunia axillaris HOM05D007582 ORTHO05D009645 6.1e-39 164.1 105 69.5
Atru.chr13.1488 Acer truncatum HOM05D007582 ORTHO05D009645 8.0e-39 163.7 109 64.2
Carub.0001s3518 Capsella rubella HOM05D007582 ORTHO05D009645 8.0e-39 163.7 109 67.0
Gorai.010G050500 Gossypium raimondii HOM05D007582 ORTHO05D009645 8.0e-39 163.7 101 72.3
Sp1g33530 Schrenkiella parvula HOM05D007582 ORTHO05D009645 8.0e-39 163.7 109 69.7
AL1G52300 Arabidopsis lyrata HOM05D007582 ORTHO05D009645 1.4e-38 162.9 109 67.0
DCAR_016167 Daucus carota HOM05D007582 ORTHO05D009645 1.8e-38 162.5 109 67.9
BcaB07g33949 Brassica carinata HOM05D007582 ORTHO05D009645 3.0e-38 161.8 109 67.0
CARHR035920 Cardamine hirsuta HOM05D007582 ORTHO05D009645 3.0e-38 161.8 109 67.9
Ciclev10002916m.g Citrus clementina HOM05D007582 ORTHO05D009645 6.7e-38 160.6 109 66.1
RhsimUnG0092400 Rhododendron simsii HOM05D007582 ORTHO05D009645 6.7e-38 160.6 121 62.0
Dinv07214 Davidia involucrata HOM05D007582 ORTHO05D009645 8.8e-38 160.2 117 62.4
Thhalv10012348m.g Eutrema salsugineum HOM05D007582 ORTHO05D009645 8.8e-38 160.2 109 66.1
Glyma.14G150500 Glycine max HOM05D007582 ORTHO05D009645 1.2e-37 159.8 115 60.9
HanXRQChr15g0465231 Helianthus annuus HOM05D007582 ORTHO05D009645 1.2e-37 159.8 109 66.1
PSO528G0093 Papaver somniferum HOM05D007582 ORTHO05D009645 1.2e-37 159.8 109 66.1
PGR042G2864 Punica granatum HOM05D007582 ORTHO05D009645 1.5e-37 159.5 111 65.8
vmacro00836 Vaccinium macrocarpon HOM05D007582 ORTHO05D009645 2.0e-37 159.1 118 61.9
VMungo0647G1492 Vigna mungo HOM05D007582 ORTHO05D009645 2.0e-37 159.1 110 62.7
PSO170G1805 Papaver somniferum HOM05D007582 ORTHO05D009645 3.3e-37 158.3 109 66.1
Aa31LG6G9350 Aethionema arabicum HOM05D007582 ORTHO05D009645 4.4e-37 157.9 109 66.1
Nn1g00264 Nelumbo nucifera HOM05D007582 ORTHO05D009645 4.4e-37 157.9 111 63.1
SGA_v2.0_scaffold28G11996 Striga asiatica HOM05D007582 ORTHO05D009645 4.4e-37 157.9 114 64.0
BolC6t35199H Brassica oleracea HOM05D007582 ORTHO05D009645 7.5e-37 157.1 109 67.0
Aqoxy6G00227 Aquilegia oxysepala HOM05D007582 ORTHO05D009645 9.7e-37 156.8 103 67.0
BcaC08g42847 Brassica carinata HOM05D007582 ORTHO05D009645 2.8e-36 155.2 109 67.0
C06p00630 Brassica napus HOM05D007582 ORTHO05D009645 2.8e-36 155.2 109 67.0
Cc10_g11990 Coffea canephora HOM05D007582 ORTHO05D009645 3.7e-36 154.8 117 59.8
A06p11790 Brassica napus HOM05D007582 ORTHO05D009645 4.8e-36 154.5 109 66.1
Hma1.2p1_0054F.1_g031010 Hydrangea macrophylla HOM05D007582 ORTHO05D009645 1.1e-35 153.3 110 64.5
CSS0038396 Camellia sinensis var. sinensis HOM05D007582 ORTHO05D009645 1.4e-35 152.9 119 58.8
Phvul.008G160900 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 1.4e-35 152.9 110 60.9
Phvul.008G167875 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 1.4e-35 152.9 110 60.9
CDE06G0523 Ceratophyllum demersum HOM05D007582 ORTHO05D009645 1.2e-34 149.8 112 58.9
Sed0002225 Sechium edule HOM05D007582 ORTHO05D009645 7.7e-34 147.1 114 58.8
Gohir.A06G045000 Gossypium hirsutum HOM05D007582 ORTHO05D009645 1.3e-33 146.4 81 77.8
ATR0584G060 Amborella trichopoda HOM05D007582 ORTHO05D009645 3.8e-33 144.8 114 57.0
ECA233G1368 Erigeron canadensis HOM05D007582 ORTHO05D009645 2.5e-32 142.1 103 63.1
SHI08583 Sapria himalayana HOM05D007582 ORTHO05D009645 7.2e-32 140.6 110 57.3
arahy.Tifrunner.gnm1.ann1.WSBZ3R Arachis hypogaea HOM05D007582 ORTHO05D009645 1.2e-31 139.8 100 66.0
Psat6g041680 Pisum sativum HOM05D007582 ORTHO05D009139 2.1e-31 139.0 96 59.4
HPP92_006841 Vanilla planifolia HOM05D007582 ORTHO05D009645 1.2e-29 133.3 121 53.7
Zm00001eb348620 Zea mays HOM05D007582 ORTHO05D009645 1.4e-27 126.3 109 56.0
Nn3g18690 Nelumbo nucifera HOM05D007582 ORTHO05D009645 5.9e-26 120.9 108 51.9
SMO143G0209 Selaginella moellendorffii HOM05D007582 ORTHO05D009645 1.5e-24 116.3 108 48.1
Os05g0435400 Oryza sativa ssp. japonica HOM05D007582 ORTHO05D009645 4.7e-23 111.3 120 50.8
Pp3c19_19360 Physcomitrium patens HOM05D007582 ORTHO05D009645 1.3e-20 103.2 120 41.7
Nitab4.5_0011334g0030 Nicotiana tabacum HOM05D007582 ORTHO05D009645 1.7e-20 102.8 79 57.0
Nn4g24512 Nelumbo nucifera HOM05D007582 ORTHO05D009645 5.9e-18 94.4 71 62.0
Mapoly0085s0071 Marchantia polymorpha HOM05D007582 ORTHO05D009645 8.6e-17 90.5 130 35.4
AagrBONN_evm.TU.Sc2ySwM_362.2461 Anthoceros agrestis HOM05D007582 ORTHO05D009645 3.7e-12 75.1 68 50.0
Aqoxy6G00222 Aquilegia oxysepala HOM05D007582 ORTHO05D009645 2.4e-11 72.4 66 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1959 Anthoceros agrestis HOM05D007582 ORTHO05D009645 7.8e-10 67.4 67 49.3
Nn1g08790 Nelumbo nucifera HOM05D007582 ORTHO05D009645 1.7e-09 66.2 35 77.1
Aa31LG6G9370 Aethionema arabicum HOM05D007582 ORTHO05D009645 1.5e-08 63.2 109 37.6
Phvul.L001669 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 8.0e-07 57.4 42 59.5


User provided reference genes

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