Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 2.0e-112 409.1 196 100.0
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.7e-109 397.1 196 95.4
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.5e-107 392.1 196 94.4
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 4.2e-107 391.3 196 93.9
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 8.0e-106 387.1 196 93.4
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 2.9e-84 315.5 216 74.5
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 2.0e-80 302.8 217 74.2
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 1.1e-75 287.0 214 70.1
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 2.0e-64 249.6 196 65.8
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 3.2e-62 242.3 192 65.1
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 7.1e-62 241.1 205 62.9
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.2e-61 240.4 207 62.8
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 2.7e-61 239.2 197 63.5
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 3.9e-60 235.3 197 62.9
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 4.7e-58 228.4 211 63.0
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 8.1e-58 227.6 205 60.5
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 8.1e-58 227.6 207 59.4
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 8.1e-58 227.6 200 61.5
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 1.8e-57 226.5 207 60.4
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 1.2e-56 223.8 203 60.6
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.0e-56 223.0 203 58.6
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 2.0e-56 223.0 204 60.3
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 2.6e-56 222.6 207 61.4
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 4.4e-56 221.9 208 59.6
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 2.2e-55 219.5 216 57.9
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 2.9e-55 219.2 222 58.1
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 3.8e-55 218.8 192 60.4
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 1.1e-54 217.2 226 54.0
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 3.2e-54 215.7 211 57.3
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 7.1e-54 214.5 206 57.8
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 9.2e-54 214.2 220 56.4
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 1.0e-52 210.7 210 59.5
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.7e-52 209.9 204 58.3
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 2.3e-52 209.5 225 53.8
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 8.7e-52 207.6 186 59.7
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 1.5e-51 206.8 205 55.1
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 5.6e-51 204.9 204 57.8
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 6.2e-50 201.4 213 57.3
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.1e-49 200.7 209 59.8
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.1e-49 200.7 209 59.8
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.4e-49 200.3 213 56.8
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 1.8e-49 199.9 201 55.7
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 3.1e-49 199.1 188 55.3
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.0e-49 198.7 213 56.8
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.6e-48 196.1 209 58.4
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 9.9e-48 194.1 222 53.2
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 9.9e-48 194.1 208 52.9
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 9.9e-48 194.1 210 54.3
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 9.9e-48 194.1 219 55.3
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 6.4e-47 191.4 201 52.2
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 6.4e-47 191.4 201 52.2
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 1.4e-46 190.3 251 47.0
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 1.4e-46 190.3 208 54.8
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 1.9e-46 189.9 226 50.9
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 5.4e-46 188.3 214 52.3
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 7.1e-46 188.0 178 58.4
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 7.1e-46 188.0 221 50.2
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 1.6e-45 186.8 200 49.5
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 2.7e-45 186.0 230 48.7
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.0e-45 184.9 214 50.9
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.3e-44 183.7 213 53.5
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.7e-44 183.3 214 50.5
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.7e-44 183.3 210 52.9
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 3.9e-44 182.2 231 51.5
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 3.9e-44 182.2 182 56.0
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 6.6e-44 181.4 221 49.8
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 6.6e-44 181.4 195 50.3
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.1e-43 180.6 211 51.7
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.6e-43 178.3 195 51.3
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 5.6e-43 178.3 201 51.7
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 9.6e-43 177.6 209 54.1
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 2.1e-42 176.4 150 62.7
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.8e-42 176.0 203 51.2
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.4e-41 173.7 196 51.0
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 1.4e-41 173.7 207 48.8
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.5e-40 170.2 196 49.5
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 1.5e-40 170.2 205 49.3
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 1.5e-40 170.2 212 47.6
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 3.4e-40 169.1 207 47.3
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 4.5e-40 168.7 216 48.1
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 5.8e-40 168.3 183 51.9
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 7.6e-40 167.9 196 50.5
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.7e-39 166.8 223 47.1
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.9e-39 166.0 172 54.7
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 4.9e-39 165.2 197 50.3
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 1.4e-38 163.7 196 49.0
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 3.2e-38 162.5 196 48.0
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 3.2e-38 162.5 196 48.0
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 7.1e-38 161.4 229 44.5
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 7.1e-38 161.4 200 49.0
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 7.1e-38 161.4 196 47.4
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 7.1e-38 161.4 200 49.0
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 7.1e-38 161.4 196 47.4
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 7.1e-38 161.4 200 49.0
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 7.1e-38 161.4 196 47.4
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 9.3e-38 161.0 199 50.3
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 1.6e-37 160.2 213 47.9
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 1.6e-37 160.2 213 47.9
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 3.5e-37 159.1 226 44.7
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 6.0e-37 158.3 197 47.7
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 7.9e-37 157.9 198 48.5
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 7.9e-37 157.9 182 50.5
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 1.8e-36 156.8 188 49.5
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 3.0e-36 156.0 180 49.4
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.9e-36 155.6 181 48.1
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 6.7e-36 154.8 200 47.5
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 8.7e-36 154.5 191 52.9
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 8.7e-36 154.5 219 47.0
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 1.1e-35 154.1 200 47.0
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 1.1e-35 154.1 204 46.6
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 1.1e-35 154.1 204 46.6
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 1.5e-35 153.7 199 47.2
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.9e-35 153.3 192 48.4
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 1.9e-35 153.3 199 46.7
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.5e-35 152.9 216 48.6
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 3.3e-35 152.5 237 41.4
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 3.3e-35 152.5 199 46.2
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 3.3e-35 152.5 199 46.2
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 3.3e-35 152.5 199 46.2
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 7.4e-35 151.4 239 39.3
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 9.6e-35 151.0 199 45.7
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 4.8e-34 148.7 212 46.2
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 1.1e-33 147.5 192 50.5
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 4.0e-33 145.6 182 45.1
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.5e-32 143.7 214 43.9
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 2.6e-32 142.9 199 45.7
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 7.6e-32 141.4 169 50.9
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.8e-31 139.0 169 50.3
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.4e-30 137.1 183 45.9
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.9e-30 136.7 252 37.3
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 1.9e-30 136.7 185 44.3
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 7.9e-29 131.3 259 37.5
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.3e-28 129.8 185 42.7
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.3e-27 125.9 181 43.1
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 5.6e-27 125.2 185 41.1
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 1.4e-25 120.6 190 41.1
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.8e-25 120.2 180 42.2
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 2.4e-25 119.8 120 59.2
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 2.0e-24 116.7 102 58.8
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 4.5e-24 115.5 209 37.3
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 3.8e-23 112.5 198 39.4
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 1.4e-22 110.5 219 37.4
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.9e-22 110.2 215 34.9
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.9e-22 110.2 196 36.2
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 7.1e-22 108.2 183 38.8
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 7.1e-22 108.2 150 46.7
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.3e-20 103.2 119 53.8
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 8.7e-20 101.3 171 40.4
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.5e-19 100.5 200 35.5
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 4.3e-19 99.0 202 32.2
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 7.4e-19 98.2 85 60.0
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.6e-18 97.1 157 43.3
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 3.1e-17 92.8 126 46.8
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 9.0e-17 91.3 98 54.1
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 2.0e-16 90.1 177 35.0
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 2.0e-16 90.1 177 35.0
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 2.6e-16 89.7 200 34.0
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 3.4e-16 89.4 177 35.0
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 3.4e-16 89.4 177 35.0
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 4.5e-16 89.0 177 34.5
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.0e-15 87.8 157 36.3
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 6.5e-15 85.1 255 30.6
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 8.5e-15 84.7 96 51.0
RcHm_v2.0_Chr5g0007251 Rosa chinensis HOM05D044691 ORTHO05D004585 7.2e-14 81.6 62 67.7
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.1e-13 80.1 189 30.7
RcHm_v2.0_Chr5g0081311 Rosa chinensis HOM05D044691 ORTHO05D004585 4.6e-13 79.0 56 73.2
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.4e-12 77.4 185 31.9
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 2.3e-12 76.6 164 34.8
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.5e-11 73.2 187 30.5
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.1e-09 67.8 107 39.3
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 3.1e-09 66.2 91 47.3
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.2e-08 64.3 178 33.1
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 3.8e-07 59.3 91 42.9
Ah.05g171110 Amaranthus hybridus HOM05D004006 ORTHO05D004585 5.0e-07 58.9 93 41.9


User provided reference genes

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