Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0295671 Rosa chinensis HOM05D007246 ORTHO05D009066 3.2e-54 214.9 115 100.0
FvH4_2g26810 Fragaria vesca HOM05D007246 ORTHO05D009066 2.1e-42 175.6 114 81.6
FAN15G0425 Fragaria x ananassa HOM05D007246 ORTHO05D009066 1.2e-40 169.9 114 78.1
FAN27G1944 Fragaria x ananassa HOM05D007246 ORTHO05D009066 1.3e-39 166.4 106 82.1
Manes.18G076600 Manihot esculenta HOM05D007246 ORTHO05D009066 9.3e-38 160.2 117 73.5
Prupe.1G499600 Prunus persica HOM05D007246 ORTHO05D009066 5.1e-36 154.5 119 74.8
MD08G1164500 Malus domestica HOM05D007246 ORTHO05D009066 1.6e-34 149.4 118 71.2
QL09p034990 Quercus lobata HOM05D007246 ORTHO05D009066 2.1e-34 149.1 116 68.1
Potri.002G084400 Populus trichocarpa HOM05D007246 ORTHO05D009066 8.1e-34 147.1 117 65.8
Thecc.08G124300 Theobroma cacao HOM05D007246 ORTHO05D009066 7.6e-32 140.6 116 65.5
Eucgr.F03786 Eucalyptus grandis HOM05D007246 ORTHO05D009066 1.0e-31 140.2 117 63.2
CANSAT25G3837 Cannabis sativa HOM05D007246 ORTHO05D009066 3.8e-31 138.3 118 61.9
Ciclev10002868m.g Citrus clementina HOM05D007246 ORTHO05D009066 3.8e-31 138.3 121 57.0
Atru.chr10.1388 Acer truncatum HOM05D007246 ORTHO05D009066 1.4e-30 136.3 115 60.9
CiPaw.05G222500 Carya illinoinensis HOM05D007246 ORTHO05D009066 2.5e-30 135.6 119 63.9
Lj5g0017876 Lotus japonicus HOM05D007246 ORTHO05D009066 2.5e-30 135.6 111 64.9
Duzib093G0837 Durio zibethinus HOM05D007246 ORTHO05D009066 3.2e-30 135.2 120 62.5
Haze_00452 Corylus avellana HOM05D007246 ORTHO05D009066 9.3e-30 133.7 118 63.6
Cfa016011 Carpinus fangiana HOM05D007246 ORTHO05D009066 1.6e-29 132.9 118 63.6
Gorai.010G050000 Gossypium raimondii HOM05D007246 ORTHO05D009066 2.1e-29 132.5 116 63.8
ClCG11G015710 Citrullus lanatus HOM05D007246 ORTHO05D009066 3.5e-29 131.7 119 59.7
TWI36G0927 Tripterygium wilfordii HOM05D007246 ORTHO05D009066 4.6e-29 131.3 117 62.4
Gohir.A06G044000 Gossypium hirsutum HOM05D007246 ORTHO05D009066 7.9e-29 130.6 116 62.9
CsaV3_4G028300 Cucumis sativus L. HOM05D007246 ORTHO05D009066 3.9e-28 128.3 119 58.8
Gohir.D06G044900 Gossypium hirsutum HOM05D007246 ORTHO05D009066 5.1e-28 127.9 117 63.2
MELO3C010475.2 Cucumis melo HOM05D007246 ORTHO05D009066 8.7e-28 127.1 119 59.7
Glyma.20G199500 Glycine max HOM05D007246 ORTHO05D009066 8.7e-28 127.1 110 58.2
Sed0023701 Sechium edule HOM05D007246 ORTHO05D009066 1.1e-27 126.7 119 57.1
Phvul.L001676 Phaseolus vulgaris HOM05D007246 ORTHO05D009066 1.9e-27 125.9 110 58.2
PGR142G2996 Punica granatum HOM05D007246 ORTHO05D009066 2.5e-27 125.6 119 60.5
GSVIVG01008877001 Vitis vinifera HOM05D007246 ORTHO05D009066 2.5e-27 125.6 117 63.2
COL.COLO4_35932 Corchorus olitorius HOM05D007246 ORTHO05D009066 4.3e-27 124.8 117 59.0
arahy.Tifrunner.gnm1.ann1.HQB0BQ Arachis hypogaea HOM05D007246 ORTHO05D009066 7.4e-27 124.0 118 59.3
TPR.G18552 Trifolium pratense HOM05D007246 ORTHO05D009066 9.6e-27 123.6 110 59.1
Actinidia02617 Actinidia chinensis HOM05D007246 ORTHO05D009066 1.3e-26 123.2 120 60.8
Lalb_Chr06g0169561 Lupinus albus HOM05D007246 ORTHO05D009066 1.3e-26 123.2 97 61.9
Rhsim03G0059000 Rhododendron simsii HOM05D007246 ORTHO05D009066 1.3e-26 123.2 120 57.5
arahy.Tifrunner.gnm1.ann1.B2XLC5 Arachis hypogaea HOM05D007246 ORTHO05D009066 1.6e-26 122.9 118 58.5
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 3.7e-26 121.7 106 58.5
Nn5g28257 Nelumbo nucifera HOM05D007246 ORTHO05D009066 6.3e-26 120.9 119 60.5
Psat6g131200 Pisum sativum HOM05D007246 ORTHO05D009066 2.4e-25 119.0 110 58.2
TAR381G0547 Trochodendron aralioides HOM05D007246 ORTHO05D009066 4.1e-25 118.2 96 64.6
Ca_09797_v3 Cicer arietinum L. HOM05D007246 ORTHO05D009066 1.5e-24 116.3 110 54.5
Cpa.g.sc36.60 Carica papaya HOM05D007246 ORTHO05D009066 2.0e-24 115.9 99 63.6
EL10Ac1g01002 Beta vulgaris HOM05D007246 ORTHO05D009066 2.6e-24 115.5 117 53.8
CSS0048322 Camellia sinensis var. sinensis HOM05D007246 ORTHO05D009066 4.5e-24 114.8 121 55.4
Hma1.2p1_0186F.1_g081760 Hydrangea macrophylla HOM05D007246 ORTHO05D009066 5.9e-24 114.4 120 55.8
Aqoxy6G00205 Aquilegia oxysepala HOM05D007246 ORTHO05D009066 3.2e-22 108.6 120 50.8
Medtr1g073190 Medicago truncatula HOM05D007246 ORTHO05D009066 4.2e-22 108.2 110 55.5
HanXRQChr13g0407621 Helianthus annuus HOM05D007246 ORTHO05D009066 7.2e-22 107.5 117 50.4
Lsat_1_v5_gn_5_179321 Lactuca sativa HOM05D007246 ORTHO05D009066 9.3e-22 107.1 99 54.5
Nitab4.5_0001803g0080 Nicotiana tabacum HOM05D007246 ORTHO05D009066 1.2e-21 106.7 117 53.0
Sc25g0000500 Simmondsia chinensis HOM05D007246 ORTHO05D009066 1.6e-21 106.3 111 53.2
PGSC0003DMG400000898 Solanum tuberosum HOM05D007246 ORTHO05D009066 2.1e-21 105.9 111 51.4
Hund17288 Selenicereus undatus HOM05D007246 ORTHO05D009066 3.5e-21 105.1 99 56.6
Peaxi162Scf00537g00034 Petunia axillaris HOM05D007246 ORTHO05D009066 7.9e-21 104.0 119 52.9
Sopen11g007630 Solanum pennellii HOM05D007246 ORTHO05D009066 2.3e-20 102.4 111 49.5
Migut.C01135 Erythranthe guttata HOM05D007246 ORTHO05D009066 3.0e-20 102.1 106 54.7
Solyc11g012890.2 Solanum lycopersicum HOM05D007246 ORTHO05D009066 3.0e-20 102.1 111 49.5
Sp1g35150 Schrenkiella parvula HOM05D007246 ORTHO05D009066 6.7e-20 100.9 118 50.0
Ah.05g171160 Amaranthus hybridus HOM05D007246 ORTHO05D009066 1.1e-19 100.1 87 58.6
AL1G54790 Arabidopsis lyrata HOM05D007246 ORTHO05D009066 1.1e-19 100.1 105 55.2
AT1G48200 Arabidopsis thaliana HOM05D007246 ORTHO05D009066 1.1e-19 100.1 119 50.4
BcaC06g34651 Brassica carinata HOM05D007246 ORTHO05D009066 1.1e-19 100.1 116 50.9
C07p26120 Brassica napus HOM05D007246 ORTHO05D009066 1.1e-19 100.1 116 50.9
Oeu040422.1 Olea europaea HOM05D007246 ORTHO05D009066 1.5e-19 99.8 118 51.7
Sp1g35170 Schrenkiella parvula HOM05D007246 ORTHO05D009066 1.9e-19 99.4 115 48.7
ECA248G1302 Erigeron canadensis HOM05D007246 ORTHO05D009066 3.3e-19 98.6 117 45.3
A06p47840 Brassica napus HOM05D007246 ORTHO05D009066 4.3e-19 98.2 118 50.0
BolC7t43138H Brassica oleracea HOM05D007246 ORTHO05D009066 4.3e-19 98.2 116 50.0
BraA06t27654Z Brassica rapa HOM05D007246 ORTHO05D009066 4.3e-19 98.2 118 50.0
Carub.0001s3729 Capsella rubella HOM05D007246 ORTHO05D009066 5.7e-19 97.8 119 48.7
Aa31LG10G5550 Aethionema arabicum HOM05D007246 ORTHO05D009066 7.4e-19 97.4 118 50.0
FAN20G0163 Fragaria x ananassa HOM05D007246 ORTHO05D009066 9.7e-19 97.1 63 79.4
Nitab4.5_0001273g0060 Nicotiana tabacum HOM05D007246 ORTHO05D009066 1.3e-18 96.7 98 52.0
DCAR_003548 Daucus carota HOM05D007246 ORTHO05D009066 2.2e-18 95.9 97 53.6
Thhalv10011824m.g Eutrema salsugineum HOM05D007246 ORTHO05D009066 2.8e-18 95.5 118 48.3
BcaC06g31695 Brassica carinata HOM05D007246 ORTHO05D009066 4.8e-18 94.7 118 49.2
MSTRG.1448 Avicennia marina HOM05D007246 ORTHO05D009066 6.3e-18 94.4 126 46.8
SGA_v2.0_scaffold24G10465 Striga asiatica HOM05D007246 ORTHO05D009066 8.2e-18 94.0 98 54.1
A06p04630 Brassica napus HOM05D007246 ORTHO05D009066 2.4e-17 92.4 120 48.3
CDE06G1719 Ceratophyllum demersum HOM05D007246 ORTHO05D009066 5.3e-17 91.3 106 49.1
MBI01_g01254_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 5.3e-17 91.3 97 52.6
C06p02690 Brassica napus HOM05D007246 ORTHO05D009066 9.0e-17 90.5 107 50.5
BolC6t35395H Brassica oleracea HOM05D007246 ORTHO05D009066 9.0e-17 90.5 107 50.5
MBI01_g01252_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 9.0e-17 90.5 97 51.5
MBI01_g01253_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 2.0e-16 89.4 97 51.5
MBI01_g01255_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 2.0e-16 89.4 97 51.5
BraA06t23667Z Brassica rapa HOM05D007246 ORTHO05D009066 2.6e-16 89.0 119 47.1
PSO170G1503 Papaver somniferum HOM05D007246 ORTHO05D009066 3.4e-16 88.6 96 52.1
PSO528G0221 Papaver somniferum HOM05D007246 ORTHO05D009066 5.9e-16 87.8 96 52.1
BcaC08g43014 Brassica carinata HOM05D007246 ORTHO05D009066 1.0e-15 87.0 107 48.6
CARHR037830 Cardamine hirsuta HOM05D007246 ORTHO05D009066 1.9e-14 82.8 76 57.9
THA.LOC104821809 Tarenaya hassleriana HOM05D007246 ORTHO05D009066 2.7e-13 79.0 112 43.8
unitig_37.g12972 Utricularia gibba HOM05D007246 ORTHO05D009066 7.9e-13 77.4 79 51.9
Carub.0007s3396 Capsella rubella HOM05D007246 ORTHO05D009066 1.4e-12 76.6 116 42.2
ATR0716G022 Amborella trichopoda HOM05D007246 ORTHO05D009066 1.8e-12 76.3 87 48.3
SalBow7G0738 Salvia bowleyana HOM05D007246 ORTHO05D009066 2.5e-11 72.4 94 42.6
BcaB07g33783 Brassica carinata HOM05D007246 ORTHO05D009066 2.8e-10 68.9 106 44.3
Os06g0149500 Oryza sativa ssp. japonica HOM05D007246 ORTHO05D009066 3.7e-10 68.6 111 36.9
BcaB07g33731 Brassica carinata HOM05D007246 ORTHO05D009066 1.1e-09 67.0 75 50.7
BcaB07g33733 Brassica carinata HOM05D007246 ORTHO05D009066 1.1e-09 67.0 75 50.7
SGA_v2.0_scaffold52G18970 Striga asiatica HOM05D007246 ORTHO05D009066 6.9e-09 64.3 99 40.4
SGA_v2.0_scaffold52G18969 Striga asiatica HOM05D007246 ORTHO05D009066 2.2e-07 59.3 94 41.5
Lsat_1_v5_gn_4_16480 Lactuca sativa HOM05D007246 ORTHO05D009066 6.5e-07 57.8 49 57.1
HPP92_002815 Vanilla planifolia HOM05D007246 ORTHO05D009066 6.5e-07 57.8 72 43.1
SEGI_11751 Sequoiadendron giganteum HOM05D007246 ORTHO05D009066 8.5e-07 57.4 114 37.7


User provided reference genes

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