Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 1.0e-171 606.7 315 100.0
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 4.5e-151 538.1 314 89.5
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.5e-151 538.1 314 89.5
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.7e-140 501.5 314 84.7
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 3.2e-133 478.8 321 78.2
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 1.3e-118 430.3 321 72.9
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.7e-118 429.9 315 76.5
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.0e-115 419.1 351 70.4
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 1.1e-112 410.6 319 67.7
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 4.5e-111 405.2 315 67.9
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 7.8e-111 404.4 322 66.5
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 1.5e-109 400.2 320 67.5
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 1.9e-109 399.8 319 67.1
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 3.3e-109 399.1 319 67.4
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 5.6e-109 398.3 319 68.0
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 9.5e-109 397.5 318 67.0
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 1.6e-108 396.7 321 67.3
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 3.6e-108 395.6 323 67.2
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 6.1e-108 394.8 320 66.2
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 6.1e-108 394.8 320 66.9
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 4.0e-107 392.1 319 65.2
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 5.2e-107 391.7 321 66.4
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 1.5e-106 390.2 320 66.2
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 2.6e-106 389.4 308 65.9
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 2.6e-106 389.4 320 66.6
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 3.4e-106 389.0 313 65.5
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 4.4e-106 388.7 320 64.4
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 5.7e-106 388.3 308 65.6
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 7.5e-106 387.9 321 65.7
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 3.7e-105 385.6 335 63.9
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 6.4e-105 384.8 320 65.0
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 6.4e-105 384.8 319 63.3
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 2.4e-104 382.9 312 65.7
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 2.4e-104 382.9 320 64.7
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 5.4e-104 381.7 312 65.4
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 5.4e-104 381.7 320 63.4
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 7.0e-104 381.3 316 63.0
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 9.2e-104 380.9 311 66.2
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 2.0e-103 379.8 320 65.6
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 2.0e-103 379.8 321 64.2
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 2.7e-103 379.4 320 64.4
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 2.7e-103 379.4 319 64.6
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 2.7e-103 379.4 318 63.5
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 5.9e-103 378.3 319 63.6
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 1.0e-102 377.5 316 65.5
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 3.3e-101 372.5 320 61.2
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 9.5e-101 370.9 320 63.8
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 1.2e-100 370.5 325 62.5
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 1.6e-100 370.2 310 65.5
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 2.1e-100 369.8 376 57.2
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 2.8e-100 369.4 322 60.9
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 3.6e-100 369.0 313 63.6
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 4.7e-100 368.6 309 64.4
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 3.1e-99 365.9 312 61.5
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 4.0e-99 365.5 318 62.3
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 5.2e-99 365.2 318 61.3
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 1.2e-98 364.0 313 62.3
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 3.7e-97 359.0 318 61.3
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 3.7e-97 359.0 326 59.5
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 8.3e-97 357.8 323 60.4
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 3.2e-96 355.9 313 62.3
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 4.1e-96 355.5 310 62.6
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 7.0e-96 354.8 377 53.6
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 1.3e-94 350.5 315 58.7
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 1.7e-94 350.1 323 59.4
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 3.0e-94 349.4 318 61.3
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 8.6e-94 347.8 314 61.5
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 8.6e-94 347.8 359 56.3
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 2.5e-93 346.3 333 58.0
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 3.3e-93 345.9 369 54.2
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 1.6e-92 343.6 319 60.5
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 3.6e-92 342.4 315 58.4
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 4.0e-91 339.0 319 56.7
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 1.5e-90 337.0 316 58.9
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 2.6e-90 336.3 298 62.8
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 5.8e-90 335.1 312 58.0
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 9.9e-90 334.3 315 59.4
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 6.4e-89 331.6 338 57.4
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 1.9e-88 330.1 296 61.1
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 2.4e-88 329.7 314 59.6
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 3.2e-88 329.3 315 58.1
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 7.1e-88 328.2 337 53.7
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 1.6e-87 327.0 316 56.3
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 2.7e-87 326.2 315 57.5
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 3.5e-87 325.9 315 57.1
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 2.3e-86 323.2 315 56.5
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 2.3e-86 323.2 315 56.5
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 2.3e-86 323.2 315 56.5
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 3.0e-86 322.8 319 56.4
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 5.1e-86 322.0 315 56.8
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 1.9e-85 320.1 315 54.9
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 4.3e-85 318.9 315 56.2
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 9.5e-85 317.8 327 53.5
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 1.6e-84 317.0 317 54.9
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 4.7e-84 315.5 322 55.3
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 4.7e-84 315.5 322 55.3
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 1.1e-83 314.3 314 53.5
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 2.4e-83 313.2 315 57.1
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 6.8e-83 311.6 318 55.7
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 1.2e-82 310.8 318 55.7
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 4.9e-81 305.4 308 55.8
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 4.9e-81 305.4 327 56.0
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 6.4e-81 305.1 266 61.3
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 3.2e-80 302.8 311 56.6
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 1.2e-79 300.8 301 58.1
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 7.8e-79 298.1 256 64.1
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 2.3e-78 296.6 312 54.5
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 3.3e-77 292.7 318 53.1
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 5.6e-77 292.0 209 74.6
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.4e-72 277.3 271 62.7
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 5.4e-72 275.4 265 58.5
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 3.8e-65 252.7 325 48.3
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.4e-64 250.8 313 50.8
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 4.6e-63 245.7 270 50.0
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 3.0e-62 243.0 310 47.7
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 3.0e-62 243.0 302 49.3
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 6.7e-62 241.9 301 46.8
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 5.5e-48 195.7 322 41.3
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 1.6e-44 184.1 324 38.3
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 4.5e-42 176.0 110 82.7
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 3.8e-41 172.9 110 80.9
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 5.1e-38 162.5 176 52.8
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 1.5e-37 161.0 185 45.9
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 9.7e-37 158.3 106 75.5
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 6.3e-36 155.6 134 64.9
FAN24G2292 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.9e-33 146.7 127 64.6
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 9.4e-32 141.7 190 48.4
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 5.3e-27 125.9 239 36.0
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 4.7e-23 112.8 91 68.1
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 9.1e-19 98.6 337 30.6
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 2.1e-15 87.4 108 45.4
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 8.8e-14 82.0 46 89.1
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 8.8e-14 82.0 46 89.1
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 8.8e-14 82.0 46 89.1
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 1.2e-13 81.6 54 74.1
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 2.0e-13 80.9 49 83.7
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 3.3e-13 80.1 67 61.2
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 1.3e-12 78.2 45 86.7
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 2.2e-12 77.4 103 43.7
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 3.7e-12 76.6 82 56.1
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 2.4e-11 73.9 53 69.8
CiPaw.05G223900 Carya illinoinensis HOM05D005174 ORTHO05D006784 1.6e-10 71.2 105 41.9
MBI04_g30787_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 8.5e-09 65.5 80 42.5
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 3.2e-08 63.5 51 68.6
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 1.2e-07 61.6 36 80.6
Oeu059427.1 Olea europaea HOM05D005174 ORTHO05D006784 1.8e-06 57.8 50 50.0


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