Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0295391 Rosa chinensis HOM05D005828 ORTHO05D006822 9.4e-46 186.8 116 100.0
FvH4_2g26520 Fragaria vesca HOM05D005828 ORTHO05D006822 1.7e-42 176.0 92 96.7
FAN24G3109 Fragaria x ananassa HOM05D005828 ORTHO05D006822 1.7e-42 176.0 92 96.7
FAN15G3227 Fragaria x ananassa HOM05D005828 ORTHO05D006822 6.9e-41 170.6 92 94.6
FAN27G1656 Fragaria x ananassa HOM05D005828 ORTHO05D006822 1.0e-39 166.8 100 88.0
Gohir.D06G043500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 2.1e-37 159.1 94 86.2
MD15G1353400 Malus domestica HOM05D005828 ORTHO05D006822 3.6e-37 158.3 93 88.2
Duzib041G0320 Durio zibethinus HOM05D005828 ORTHO05D006822 4.7e-37 157.9 93 87.1
Gorai.010G048600 Gossypium raimondii HOM05D005828 ORTHO05D006822 7.9e-37 157.1 93 86.0
Gohir.A06G042500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 1.8e-36 156.0 93 84.9
Prupe.1G501700 Prunus persica HOM05D005828 ORTHO05D006822 3.9e-36 154.8 93 84.9
Potri.002G086300 Populus trichocarpa HOM05D005828 ORTHO05D006822 6.7e-36 154.1 91 84.6
Cpa.g.sc70.13 Carica papaya HOM05D005828 ORTHO05D006822 4.4e-35 151.4 93 82.8
Nn1g08691 Nelumbo nucifera HOM05D005828 ORTHO05D006822 9.7e-35 150.2 93 82.8
CiPaw.02G169200 Carya illinoinensis HOM05D005828 ORTHO05D006822 2.2e-34 149.1 92 81.5
Ciclev10002958m.g Citrus clementina HOM05D005828 ORTHO05D006822 4.8e-34 147.9 93 80.6
Duzib093G2142 Durio zibethinus HOM05D005828 ORTHO05D006822 4.8e-34 147.9 93 80.6
Manes.18G074748 Manihot esculenta HOM05D005828 ORTHO05D006822 4.8e-34 147.9 91 81.3
QL09p036513 Quercus lobata HOM05D005828 ORTHO05D006822 1.4e-33 146.4 92 82.6
Dinv40388 Davidia involucrata HOM05D005828 ORTHO05D006822 2.4e-33 145.6 90 80.0
Lj1g0023360 Lotus japonicus HOM05D005828 ORTHO05D006822 2.4e-33 145.6 89 83.1
PGR042G1795 Punica granatum HOM05D005828 ORTHO05D006822 2.4e-33 145.6 90 82.2
Actinidia23063 Actinidia chinensis HOM05D005828 ORTHO05D006822 3.1e-33 145.2 93 79.6
Psat2g078520 Pisum sativum HOM05D005828 ORTHO05D006822 3.1e-33 145.2 92 80.4
TWI56G1238 Tripterygium wilfordii HOM05D005828 ORTHO05D006822 4.1e-33 144.8 91 79.1
Medtr5g059050 Medicago truncatula HOM05D005828 ORTHO05D006822 5.3e-33 144.4 89 80.9
Thecc.08G121200 Theobroma cacao HOM05D005828 ORTHO05D006822 5.3e-33 144.4 85 84.7
Eucgr.F03768 Eucalyptus grandis HOM05D005828 ORTHO05D006822 7.0e-33 144.1 93 78.5
Phvul.008G165500 Phaseolus vulgaris HOM05D005828 ORTHO05D006822 7.0e-33 144.1 90 81.1
Sed0016516 Sechium edule HOM05D005828 ORTHO05D006822 7.0e-33 144.1 90 82.2
Glyma.14G162800 Glycine max HOM05D005828 ORTHO05D006822 9.1e-33 143.7 90 81.1
TAR628G1302 Trochodendron aralioides HOM05D005828 ORTHO05D006822 1.2e-32 143.3 92 76.1
CSS0005937 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 1.5e-32 142.9 93 78.5
Dinv27340 Davidia involucrata HOM05D005828 ORTHO05D006822 2.0e-32 142.5 93 80.6
Migut.G00970 Erythranthe guttata HOM05D005828 ORTHO05D006822 3.5e-32 141.7 84 81.0
Glyma.13G081900 Glycine max HOM05D005828 ORTHO05D006822 3.5e-32 141.7 90 80.0
Aqoxy6G00155 Aquilegia oxysepala HOM05D005828 ORTHO05D006822 4.5e-32 141.4 86 83.7
CANSAT64G1100 Cannabis sativa HOM05D005828 ORTHO05D006822 5.9e-32 141.0 92 79.3
Rhsim10G0081200 Rhododendron simsii HOM05D005828 ORTHO05D006822 7.7e-32 140.6 91 75.8
Os12g0481200 Oryza sativa ssp. japonica HOM05D005828 ORTHO05D006822 1.0e-31 140.2 85 83.5
arahy.Tifrunner.gnm1.ann1.IQQ61N Arachis hypogaea HOM05D005828 ORTHO05D006822 1.3e-31 139.8 88 78.4
Migut.C01150 Erythranthe guttata HOM05D005828 ORTHO05D006822 1.3e-31 139.8 85 78.8
Lalb_Chr04g0253341 Lupinus albus HOM05D005828 ORTHO05D006822 1.3e-31 139.8 88 77.3
GSVIVG01013096001 Vitis vinifera HOM05D005828 ORTHO05D006822 1.3e-31 139.8 85 83.5
Ah.01g019990 Amaranthus hybridus HOM05D005828 ORTHO05D006822 1.7e-31 139.4 87 79.3
Cc10_g15090 Coffea canephora HOM05D005828 ORTHO05D006822 1.7e-31 139.4 93 79.6
Hma1.2p1_0248F.1_g102070 Hydrangea macrophylla HOM05D005828 ORTHO05D006822 1.7e-31 139.4 90 81.1
MBI11_g22242_MAGBIO Magnolia biondii HOM05D005828 ORTHO05D006822 2.2e-31 139.0 81 84.0
Migut.K01196 Erythranthe guttata HOM05D005828 ORTHO05D006822 2.9e-31 138.7 81 81.5
Oeu050902.1 Olea europaea HOM05D005828 ORTHO05D006822 2.9e-31 138.7 88 79.5
Nn7g37602 Nelumbo nucifera HOM05D005828 ORTHO05D006822 5.0e-31 137.9 86 82.6
Nitab4.5_0010023g0030 Nicotiana tabacum HOM05D005828 ORTHO05D006822 5.0e-31 137.9 91 78.0
MD08G1168000 Malus domestica HOM05D005828 ORTHO05D006822 6.5e-31 137.5 77 89.6
AUR62011415 Chenopodium quinoa HOM05D005828 ORTHO05D006822 8.5e-31 137.1 84 79.8
AUR62022881 Chenopodium quinoa HOM05D005828 ORTHO05D006822 8.5e-31 137.1 84 79.8
ClCG11G015600 Citrullus lanatus HOM05D005828 ORTHO05D006822 8.5e-31 137.1 91 78.0
Zm00001eb318220 Zea mays HOM05D005828 ORTHO05D006822 1.1e-30 136.7 85 81.2
SGA_v2.0_scaffold52G18982 Striga asiatica HOM05D005828 ORTHO05D006822 1.5e-30 136.3 91 75.8
BcaC06g34917 Brassica carinata HOM05D005828 ORTHO05D006822 1.9e-30 136.0 85 81.2
C07p21820 Brassica napus HOM05D005828 ORTHO05D006822 1.9e-30 136.0 85 81.2
BolC7t42713H Brassica oleracea HOM05D005828 ORTHO05D006822 1.9e-30 136.0 85 81.2
Ca_03724_v3 Cicer arietinum L. HOM05D005828 ORTHO05D006822 1.9e-30 136.0 81 85.2
TPR.G8500 Trifolium pratense HOM05D005828 ORTHO05D006822 1.9e-30 136.0 88 80.7
CARHR022310 Cardamine hirsuta HOM05D005828 ORTHO05D006822 2.5e-30 135.6 96 72.9
Nitab4.5_0002816g0110 Nicotiana tabacum HOM05D005828 ORTHO05D006822 2.5e-30 135.6 91 78.0
Hund16842 Selenicereus undatus HOM05D005828 ORTHO05D006822 2.5e-30 135.6 87 74.7
Atru.chr13.1407 Acer truncatum HOM05D005828 ORTHO05D006822 3.2e-30 135.2 87 77.0
CAN.G48.25 Capsicum annuum HOM05D005828 ORTHO05D006822 5.5e-30 134.4 91 73.6
THA.LOC104810143 Tarenaya hassleriana HOM05D005828 ORTHO05D006822 7.2e-30 134.0 93 74.2
CDE01G0185 Ceratophyllum demersum HOM05D005828 ORTHO05D006822 1.2e-29 133.3 80 78.8
Sc01g0001360 Simmondsia chinensis HOM05D005828 ORTHO05D006822 1.2e-29 133.3 84 77.4
Aa31LG7G5940 Aethionema arabicum HOM05D005828 ORTHO05D006822 1.6e-29 132.9 98 73.5
AL1G35150 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 1.6e-29 132.9 87 77.0
AL1G35290 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 1.6e-29 132.9 87 77.0
AT1G21930 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 1.6e-29 132.9 84 79.8
Carub.0001s2142 Capsella rubella HOM05D005828 ORTHO05D006822 1.6e-29 132.9 95 72.6
EL10Ac9g21807 Beta vulgaris HOM05D005828 ORTHO05D006822 2.1e-29 132.5 81 79.0
Peaxi162Scf00241g00022 Petunia axillaris HOM05D005828 ORTHO05D006822 2.1e-29 132.5 90 75.6
Sabra02G0067700 Salix brachista HOM05D005828 ORTHO05D006822 2.7e-29 132.1 117 62.4
AT3G42150 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 3.6e-29 131.7 84 78.6
HanXRQChr12g0379421 Helianthus annuus HOM05D005828 ORTHO05D006822 4.7e-29 131.3 83 73.5
CSS0009962 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 6.1e-29 131.0 108 66.7
PSO170G1674 Papaver somniferum HOM05D005828 ORTHO05D006822 6.1e-29 131.0 80 76.2
A09p42800 Brassica napus HOM05D005828 ORTHO05D006822 8.0e-29 130.6 85 77.6
BraA09t39754Z Brassica rapa HOM05D005828 ORTHO05D006822 8.0e-29 130.6 85 77.6
Solyc03g093220.3 Solanum lycopersicum HOM05D005828 ORTHO05D006822 8.0e-29 130.6 90 74.4
Sopen03g024020 Solanum pennellii HOM05D005828 ORTHO05D006822 8.0e-29 130.6 90 74.4
BcaC05g26118 Brassica carinata HOM05D005828 ORTHO05D006822 1.0e-28 130.2 85 77.6
BcaC05g26120 Brassica carinata HOM05D005828 ORTHO05D006822 1.0e-28 130.2 85 77.6
C05p20980 Brassica napus HOM05D005828 ORTHO05D006822 1.0e-28 130.2 85 77.6
BolC5t30796H Brassica oleracea HOM05D005828 ORTHO05D006822 1.0e-28 130.2 85 77.6
HPP92_010723 Vanilla planifolia HOM05D005828 ORTHO05D006822 1.8e-28 129.4 84 75.0
BcaB03g14247 Brassica carinata HOM05D005828 ORTHO05D006822 2.3e-28 129.0 83 74.7
Sp1g19470 Schrenkiella parvula HOM05D005828 ORTHO05D006822 2.3e-28 129.0 85 76.5
unitig_22.g6732 Utricularia gibba HOM05D005828 ORTHO05D006822 3.9e-28 128.3 91 71.4
ECA246G1275 Erigeron canadensis HOM05D005828 ORTHO05D006822 5.2e-28 127.9 82 74.4
QL09p035324 Quercus lobata HOM05D005828 ORTHO05D006822 5.2e-28 127.9 77 84.4
Haze_00481 Corylus avellana HOM05D005828 ORTHO05D006822 6.7e-28 127.5 76 85.5
BcaB07g32190 Brassica carinata HOM05D005828 ORTHO05D006822 8.8e-28 127.1 78 79.5
Thhalv10009188m.g Eutrema salsugineum HOM05D005828 ORTHO05D006822 8.8e-28 127.1 85 75.3
ATR0021G028 Amborella trichopoda HOM05D005828 ORTHO05D006822 1.5e-27 126.3 84 73.8
A07p14860 Brassica napus HOM05D005828 ORTHO05D006822 4.4e-27 124.8 75 82.7
AUR62016643 Chenopodium quinoa HOM05D005828 ORTHO05D006822 7.4e-27 124.0 97 67.0
BcaB07g32192 Brassica carinata HOM05D005828 ORTHO05D006822 9.7e-27 123.6 85 74.1
RhsimUnG0054200 Rhododendron simsii HOM05D005828 ORTHO05D006822 1.3e-26 123.2 108 62.0
Lsat_1_v5_gn_9_83901 Lactuca sativa HOM05D005828 ORTHO05D006822 1.7e-26 122.9 81 77.8
HPP92_010646 Vanilla planifolia HOM05D005828 ORTHO05D006822 1.7e-26 122.9 84 71.4
Rhsim02G0128100 Rhododendron simsii HOM05D005828 ORTHO05D006822 4.8e-26 121.3 77 77.9
vmacro15901 Vaccinium macrocarpon HOM05D005828 ORTHO05D006822 1.1e-25 120.2 77 77.9
CsaV3_4G028420 Cucumis sativus L. HOM05D005828 ORTHO05D006822 5.3e-25 117.9 77 79.2
MELO3C010460.2 Cucumis melo HOM05D005828 ORTHO05D006822 1.2e-24 116.7 77 77.9
SalBow1G4500 Salvia bowleyana HOM05D005828 ORTHO05D006822 2.0e-24 115.9 77 79.2
PGSC0003DMG400014827 Solanum tuberosum HOM05D005828 ORTHO05D006822 5.9e-24 114.4 78 76.9
DCAR_014107 Daucus carota HOM05D005828 ORTHO05D006822 7.7e-24 114.0 77 71.4
BolC5t30794H Brassica oleracea HOM05D005828 ORTHO05D006822 1.7e-23 112.8 83 71.1
PSO528G0081 Papaver somniferum HOM05D005828 ORTHO05D006822 2.9e-23 112.1 81 74.1
DCAR_014096 Daucus carota HOM05D005828 ORTHO05D006822 1.2e-21 106.7 67 76.1
SHI08265 Sapria himalayana HOM05D005828 ORTHO05D006822 1.8e-20 102.8 76 71.1
BcaC07g42575 Brassica carinata HOM05D005828 ORTHO05D006822 5.2e-20 101.3 84 61.9
Medtr5g058700 Medicago truncatula HOM05D005828 ORTHO05D006822 1.7e-18 96.3 89 60.7
Zm00001eb102630 Zea mays HOM05D005828 ORTHO05D006822 6.3e-18 94.4 86 62.8
MD03G1196900 Malus domestica HOM05D005828 ORTHO05D006822 5.3e-17 91.3 58 77.6
SEGI_28823 Sequoiadendron giganteum HOM05D005828 ORTHO05D006822 1.3e-15 86.7 59 76.3
Mapoly0038s0094 Marchantia polymorpha HOM05D005828 ORTHO05D006822 1.2e-13 80.1 70 51.4
Pp3c4_22520 Physcomitrium patens HOM05D005828 ORTHO05D006822 3.6e-13 78.6 62 56.5
Lalb_Chr17g0343871 Lupinus albus HOM05D005828 ORTHO05D006822 8.0e-13 77.4 47 80.9
SMO232G0111 Selaginella moellendorffii HOM05D005828 ORTHO05D006822 1.3e-10 70.1 49 65.3
AagrBONN_evm.TU.Sc2ySwM_368.871 Anthoceros agrestis HOM05D005828 ORTHO05D006822 8.3e-10 67.4 56 62.5
BcaB03g11887 Brassica carinata HOM05D005828 ORTHO05D006822 1.4e-09 66.6 48 66.7
BcaNung06341 Brassica carinata HOM05D005828 ORTHO05D006822 1.4e-09 66.6 48 66.7
BcaNung06770 Brassica carinata HOM05D005828 ORTHO05D006822 1.4e-09 66.6 48 66.7


User provided reference genes

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