Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 4.9e-50 201.1 119 100.0
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 1.8e-39 166.0 119 87.4
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.9e-38 162.5 119 81.5
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 4.3e-38 161.4 119 80.7
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 9.6e-38 160.2 119 84.0
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.1e-37 159.1 119 80.7
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 3.1e-36 155.2 119 79.0
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 5.3e-36 154.5 118 74.6
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 6.9e-36 154.1 119 81.5
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 5.8e-35 151.0 118 73.7
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 8.4e-34 147.1 118 72.0
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 1.4e-33 146.4 116 83.6
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 2.7e-32 142.1 118 73.7
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 1.0e-31 140.2 118 74.6
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 8.7e-31 137.1 118 72.0
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 2.1e-29 132.5 118 61.0
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 8.2e-29 130.6 112 80.4
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 4.1e-28 128.3 117 65.8
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 9.0e-28 127.1 112 78.6
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 2.0e-27 125.9 94 76.6
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 2.6e-27 125.6 117 67.5
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 2.6e-27 125.6 95 76.8
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 4.5e-27 124.8 120 68.3
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 4.5e-27 124.8 118 60.2
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 4.5e-27 124.8 118 63.6
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 1.0e-26 123.6 117 65.0
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 2.2e-26 122.5 117 65.8
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 2.9e-26 122.1 119 64.7
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 5.0e-26 121.3 117 67.5
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 8.4e-26 120.6 118 61.9
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 4.2e-25 118.2 111 66.7
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 4.2e-25 118.2 118 52.5
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 7.2e-25 117.5 119 63.0
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 9.3e-25 117.1 117 62.4
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 1.6e-24 116.3 111 64.9
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 2.7e-24 115.5 118 65.3
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 7.9e-24 114.0 110 61.8
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 1.0e-23 113.6 118 59.3
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 3.0e-23 112.1 117 64.1
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 3.9e-23 111.7 111 61.3
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 8.7e-23 110.5 118 63.6
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 1.5e-22 109.8 121 62.8
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.9e-22 109.4 111 64.0
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 3.3e-22 108.6 117 62.4
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 4.3e-22 108.2 123 61.8
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 5.7e-22 107.8 110 63.6
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 2.2e-21 105.9 118 59.3
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.8e-21 105.5 109 60.6
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 2.8e-21 105.5 118 61.0
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 2.8e-21 105.5 119 62.2
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 4.8e-21 104.8 120 59.2
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 6.3e-21 104.4 117 54.7
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 1.4e-20 103.2 119 62.2
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 1.4e-20 103.2 122 59.0
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.4e-20 103.2 119 51.3
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 1.4e-20 103.2 119 59.7
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 1.4e-20 103.2 118 59.3
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 1.2e-19 100.1 114 61.4
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 1.2e-19 100.1 110 60.9
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 7.7e-19 97.4 108 62.0
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 7.7e-19 97.4 109 56.9
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.0e-18 97.1 109 56.9
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 1.0e-18 97.1 119 60.5
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.3e-18 96.7 109 56.9
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.7e-18 96.3 111 59.5
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 2.2e-18 95.9 122 58.2
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 6.5e-18 94.4 112 55.4
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 6.5e-18 94.4 107 61.7
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 1.9e-17 92.8 106 61.3
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 2.5e-17 92.4 111 58.6
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 4.2e-17 91.7 118 55.9
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 7.2e-17 90.9 121 58.7
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 2.1e-16 89.4 110 60.0
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 2.1e-16 89.4 108 59.3
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 2.1e-16 89.4 122 56.6
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 2.7e-16 89.0 119 58.8
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 2.7e-16 89.0 114 57.9
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 2.7e-16 89.0 119 45.4
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 3.6e-16 88.6 119 56.3
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 3.6e-16 88.6 121 53.7
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 3.6e-16 88.6 121 53.7
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 3.6e-16 88.6 110 47.3
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 4.6e-16 88.2 119 56.3
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 1.4e-15 86.7 118 55.9
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 3.9e-15 85.1 122 52.5
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 3.9e-15 85.1 122 52.5
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 3.9e-15 85.1 122 52.5
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 3.9e-15 85.1 124 53.2
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 5.1e-15 84.7 98 61.2
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 5.1e-15 84.7 110 55.5
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 1.1e-14 83.6 119 53.8
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 1.1e-14 83.6 122 52.5
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 1.1e-14 83.6 122 52.5
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 1.1e-14 83.6 119 54.6
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 1.1e-14 83.6 110 44.5
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 1.5e-14 83.2 109 56.0
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 5.7e-14 81.3 109 55.0
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 9.7e-14 80.5 105 57.1
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 3.7e-13 78.6 112 55.4
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 3.7e-13 78.6 119 52.1
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 4.8e-13 78.2 119 51.3
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 1.1e-12 77.0 80 52.5
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 1.1e-12 77.0 71 53.5
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 1.8e-12 76.3 121 52.1
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 2.4e-12 75.9 64 56.2
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 2.4e-12 75.9 118 50.8
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 4.1e-12 75.1 73 58.9
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 6.9e-12 74.3 103 40.8
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 9.1e-12 73.9 124 48.4
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 2.0e-11 72.8 111 51.4
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 2.6e-11 72.4 71 57.7
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 4.5e-11 71.6 84 53.6
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 5.9e-11 71.2 116 49.1
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 2.2e-10 69.3 121 49.6
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 2.2e-10 69.3 113 43.4
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 2.9e-10 68.9 121 50.4
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 3.8e-10 68.6 69 56.5
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 3.8e-10 68.6 69 56.5
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 3.8e-10 68.6 69 56.5
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 5.0e-10 68.2 122 47.5
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 5.0e-10 68.2 122 47.5
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 5.0e-10 68.2 122 47.5
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 1.1e-09 67.0 122 47.5
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 1.1e-09 67.0 71 46.5
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 2.5e-09 65.9 69 55.1
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 2.5e-09 65.9 119 48.7
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 7.2e-09 64.3 73 43.8


User provided reference genes

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