Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 1.8e-128 462.6 236 100.0
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 7.6e-127 457.2 236 98.7
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.4e-118 427.2 236 92.8
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 3.2e-117 425.2 236 91.1
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 5.4e-117 424.5 236 91.5
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.6e-116 422.9 236 92.4
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 6.6e-115 417.5 233 88.4
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.5e-114 415.6 236 90.7
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 3.3e-114 415.2 236 91.1
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 3.6e-113 411.8 236 88.1
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 3.5e-108 395.2 228 86.0
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 6.0e-108 394.4 228 87.3
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 1.4e-104 383.3 228 83.8
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 5.3e-104 381.3 228 82.5
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.2e-103 380.2 236 83.1
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 2.0e-103 379.4 239 83.3
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 9.9e-103 377.1 231 81.4
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 1.3e-102 376.7 232 81.5
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 3.8e-102 375.2 227 83.7
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 1.4e-101 373.2 236 79.2
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 2.4e-101 372.5 228 81.6
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 4.2e-101 371.7 236 79.2
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 7.1e-101 370.9 228 79.4
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.2e-100 370.2 202 93.1
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.2e-100 370.2 227 81.5
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 6.0e-100 367.9 230 80.4
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 5.1e-99 364.8 231 77.9
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.1e-98 363.6 233 76.4
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 1.9e-98 362.8 231 77.5
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 7.4e-98 360.9 227 79.3
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 9.6e-98 360.5 227 78.9
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 3.7e-97 358.6 227 79.3
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 4.8e-97 358.2 229 78.2
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 4.8e-97 358.2 227 78.0
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 4.8e-97 358.2 227 77.5
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 1.1e-96 357.1 231 76.2
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.1e-96 357.1 227 78.9
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 2.4e-96 355.9 228 78.5
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 4.0e-96 355.1 227 77.1
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 5.3e-96 354.8 228 78.5
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 5.3e-96 354.8 231 77.1
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 9.0e-96 354.0 233 73.4
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 9.0e-96 354.0 234 73.5
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.2e-95 353.6 227 78.4
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 1.5e-95 353.2 227 77.1
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 2.0e-95 352.8 235 72.8
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 4.5e-95 351.7 227 77.1
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 1.0e-94 350.5 228 74.6
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.3e-94 350.1 227 78.0
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 1.7e-94 349.7 227 78.4
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.7e-94 349.7 232 76.7
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 2.2e-94 349.4 232 74.6
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.2e-94 349.4 229 74.2
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 2.2e-94 349.4 228 74.6
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 2.9e-94 349.0 233 73.0
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 3.8e-94 348.6 233 73.0
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 4.9e-94 348.2 229 74.2
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 1.1e-93 347.1 232 74.6
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.4e-93 346.7 228 76.8
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.9e-93 346.3 229 74.2
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 2.5e-93 345.9 233 74.2
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 2.5e-93 345.9 229 73.8
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.5e-93 345.9 229 73.8
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 2.5e-93 345.9 232 73.7
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 3.2e-93 345.5 233 74.2
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 3.2e-93 345.5 231 71.9
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 3.2e-93 345.5 233 71.2
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 4.2e-93 345.1 224 75.4
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 4.2e-93 345.1 227 76.2
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.2e-93 345.1 223 75.8
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 4.2e-93 345.1 226 75.2
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 5.5e-93 344.7 229 73.4
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 7.1e-93 344.4 232 72.4
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 7.1e-93 344.4 227 75.3
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 7.1e-93 344.4 232 72.4
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 9.3e-93 344.0 228 74.6
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 2.1e-92 342.8 228 74.6
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 2.1e-92 342.8 223 74.9
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 4.6e-92 341.7 228 73.7
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 4.6e-92 341.7 209 81.8
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 1.3e-91 340.1 232 71.6
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 1.8e-91 339.7 227 74.0
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.8e-91 339.7 227 75.8
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 1.8e-91 339.7 227 74.4
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.3e-91 339.3 227 74.4
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 6.7e-91 337.8 227 73.6
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 6.7e-91 337.8 232 70.7
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 1.1e-90 337.0 268 66.4
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 1.5e-90 336.7 227 73.1
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 1.5e-90 336.7 228 73.2
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.9e-90 336.3 227 73.6
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.5e-90 335.9 218 79.4
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 1.3e-89 333.6 227 74.4
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.3e-89 333.6 227 72.7
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 2.1e-89 332.8 224 73.7
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 6.2e-89 331.3 224 72.8
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 1.4e-88 330.1 228 71.1
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 6.9e-88 327.8 313 56.9
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 6.9e-88 327.8 228 70.6
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 6.9e-88 327.8 232 72.0
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.5e-87 326.6 228 70.6
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 2.6e-87 325.9 232 72.4
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 4.5e-87 325.1 224 71.0
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 5.0e-86 321.6 212 73.1
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 8.4e-86 320.9 228 69.3
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 1.9e-85 319.7 228 69.7
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 1.9e-85 319.7 228 69.3
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 2.5e-85 319.3 228 68.9
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 2.5e-85 319.3 228 68.9
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 4.2e-85 318.5 228 69.3
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 4.2e-85 318.5 228 68.9
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 1.2e-84 317.0 228 69.3
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 1.6e-84 316.6 228 68.9
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 2.7e-84 315.8 224 69.6
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 2.7e-84 315.8 227 67.8
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.3e-83 312.8 228 68.0
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.4e-80 303.5 221 68.3
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 4.5e-79 298.5 221 68.3
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 4.5e-79 298.5 227 64.3
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 5.9e-79 298.1 192 78.1
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 5.9e-79 298.1 192 77.1
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 2.9e-78 295.8 204 72.5
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 6.5e-78 294.7 223 67.3
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 1.9e-77 293.1 221 65.2
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 6.1e-76 288.1 229 64.2
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.5e-74 282.7 227 63.9
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 7.4e-74 281.2 195 71.8
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 3.7e-73 278.9 148 93.9
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 7.7e-71 271.2 178 75.8
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.4e-67 260.4 238 59.7
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.7e-65 253.4 144 88.9
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 4.2e-61 238.8 182 67.6
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.1e-60 235.0 124 95.2
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 6.7e-59 231.5 220 54.5
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 1.1e-58 230.7 224 51.8
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.1e-58 230.7 133 85.0
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 2.6e-58 229.6 221 51.6
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 5.7e-58 228.4 235 50.6
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.3e-57 227.3 213 58.2
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 2.3e-51 206.5 119 84.9
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 5.7e-50 201.8 172 62.8
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 5.7e-50 201.8 144 72.2
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 4.5e-47 192.2 135 72.6
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 2.9e-46 189.5 143 67.8
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 3.6e-44 182.6 134 67.9
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 8.8e-43 177.9 142 60.6
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 2.0e-42 176.8 126 73.0
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 5.7e-42 175.3 138 61.6
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 1.3e-41 174.1 147 61.2
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 7.2e-37 158.3 189 45.5
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 3.6e-36 156.0 88 86.4
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 8.0e-36 154.8 185 44.9
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 4.4e-34 149.1 179 48.6
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 9.8e-34 147.9 85 83.5
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 8.3e-33 144.8 191 45.0
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 3.2e-32 142.9 97 74.2
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 3.2e-32 142.9 92 81.5
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 2.7e-31 139.8 122 63.1
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.1e-29 134.4 79 87.3
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 1.5e-29 134.0 115 64.3
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.9e-29 133.7 85 80.0
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 1.2e-28 131.0 96 66.7
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 6.2e-28 128.6 89 73.0
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 6.2e-28 128.6 147 51.7
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 1.4e-27 127.5 85 75.3
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 2.3e-27 126.7 103 61.2
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 5.2e-27 125.6 85 71.8
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 8.9e-27 124.8 82 76.8
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 1.7e-25 120.6 68 86.8
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 4.9e-25 119.0 95 66.3
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 1.4e-24 117.5 106 60.4
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 1.2e-23 114.4 77 74.0
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.0e-22 111.3 85 65.9
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 2.0e-18 97.1 88 59.1
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 3.4e-18 96.3 60 80.0
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 1.7e-17 94.0 59 76.3
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 4.6e-15 85.9 51 84.3
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 6.0e-15 85.5 189 32.3
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.0e-14 84.7 70 62.9
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 2.1e-12 77.0 219 27.4
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 7.6e-10 68.6 49 65.3
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 7.1e-08 62.0 67 49.3


User provided reference genes

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