Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0293271 Rosa chinensis HOM05D007164 ORTHO05D008802 1.0e-263 912.9 484 100.0
FAN20G2954 Fragaria x ananassa HOM05D007164 ORTHO05D008802 7.0e-204 714.1 495 79.8
FAN24G2541 Fragaria x ananassa HOM05D007164 ORTHO05D008802 2.4e-196 689.1 495 77.6
FAN27G1449 Fragaria x ananassa HOM05D007164 ORTHO05D008802 4.9e-173 611.7 470 74.3
FvH4_2g25160 Fragaria vesca HOM05D007164 ORTHO05D008802 2.7e-163 579.3 424 78.1
MD03G1283300 Malus domestica HOM05D007164 ORTHO05D008802 3.9e-154 548.9 483 61.1
Prupe.8G256400 Prunus persica HOM05D007164 ORTHO05D008802 6.5e-125 451.8 436 58.3
QL12p030187 Quercus lobata HOM05D007164 ORTHO05D008802 2.9e-93 346.7 510 44.3
CANSAT25G0358 Cannabis sativa HOM05D007164 ORTHO05D008802 5.2e-82 309.3 525 40.6
Potri.002G208058 Populus trichocarpa HOM05D007164 ORTHO05D008802 1.3e-77 294.7 503 39.2
Duzib138G1086 Durio zibethinus HOM05D007164 ORTHO05D008802 2.5e-76 290.4 527 37.6
Sabra02G0151300 Salix brachista HOM05D007164 ORTHO05D008802 3.3e-76 290.0 570 36.1
Gorai.004G088600 Gossypium raimondii HOM05D007164 ORTHO05D008802 5.6e-76 289.3 525 38.3
Manes.01G216000 Manihot esculenta HOM05D007164 ORTHO05D008802 1.6e-75 287.7 535 37.8
Sabra02G0151900 Salix brachista HOM05D007164 ORTHO05D008802 1.7e-72 277.7 602 34.4
Thecc.01G295000 Theobroma cacao HOM05D007164 ORTHO05D008802 6.0e-70 269.2 518 36.5
Haze_04871 Corylus avellana HOM05D007164 ORTHO05D008802 7.3e-68 262.3 353 46.5
TWI23G0507 Tripterygium wilfordii HOM05D007164 ORTHO05D008802 1.2e-67 261.5 439 39.4
Gohir.A08G075000 Gossypium hirsutum HOM05D007164 ORTHO05D008802 1.4e-66 258.1 405 40.2
Atru.chr5.1222 Acer truncatum HOM05D007164 ORTHO05D008802 1.8e-66 257.7 351 43.6
COL.COLO4_23399 Corchorus olitorius HOM05D007164 ORTHO05D008802 1.8e-66 257.7 498 36.3
Gohir.D08G084100 Gossypium hirsutum HOM05D007164 ORTHO05D008802 3.1e-66 256.9 525 35.0
TAR636G2054 Trochodendron aralioides HOM05D007164 ORTHO05D008802 3.3e-60 236.9 526 34.2
Psat5g105520 Pisum sativum HOM05D007164 ORTHO05D008802 1.1e-55 221.9 510 33.7
Dinv33025 Davidia involucrata HOM05D007164 ORTHO05D008802 4.6e-54 216.5 448 35.9
CiPaw.07G104500 Carya illinoinensis HOM05D007164 ORTHO05D008802 2.3e-53 214.2 236 50.0
ClCG05G010410 Citrullus lanatus HOM05D007164 ORTHO05D008802 6.6e-53 212.6 485 34.4
Lj2A1189G41 Lonicera japonica HOM05D007164 ORTHO05D008802 4.8e-51 206.5 439 35.1
Cpa.g.sc9.198 Carica papaya HOM05D007164 ORTHO05D008802 1.8e-50 204.5 517 32.3
Eucgr.K03454 Eucalyptus grandis HOM05D007164 ORTHO05D008802 3.1e-50 203.8 529 32.9
TPR.G27420 Trifolium pratense HOM05D007164 ORTHO05D008802 1.2e-49 201.8 429 34.5
Lj6g0003922 Lotus japonicus HOM05D007164 ORTHO05D008802 5.8e-49 199.5 511 32.7
arahy.Tifrunner.gnm1.ann1.JK4YNR Arachis hypogaea HOM05D007164 ORTHO05D008802 7.6e-49 199.1 520 34.0
Actinidia24839 Actinidia chinensis HOM05D007164 ORTHO05D008802 3.8e-48 196.8 503 33.0
Aqoxy2G03039 Aquilegia oxysepala HOM05D007164 ORTHO05D008802 3.2e-47 193.7 439 33.5
Lalb_Chr18g0047211 Lupinus albus HOM05D007164 ORTHO05D008802 7.1e-47 192.6 337 38.9
Sed0021441 Sechium edule HOM05D007164 ORTHO05D008802 7.1e-47 192.6 486 33.7
arahy.Tifrunner.gnm1.ann1.94G738 Arachis hypogaea HOM05D007164 ORTHO05D008802 7.9e-46 189.1 481 33.3
Medtr3g082270 Medicago truncatula HOM05D007164 ORTHO05D008802 1.3e-45 188.3 505 31.7
Glyma.13G007800 Glycine max HOM05D007164 ORTHO05D008802 9.6e-44 182.2 536 30.8
Rhsim01G0283000 Rhododendron simsii HOM05D007164 ORTHO05D008802 2.1e-43 181.0 511 31.3
Ciclev10017702m.g Citrus clementina HOM05D007164 ORTHO05D008802 5.8e-41 172.9 315 39.7
ECA247G0548 Erigeron canadensis HOM05D002562 ORTHO05D002808 4.9e-40 169.9 513 29.8
CsaV3_3G018070 Cucumis sativus L. HOM05D007164 ORTHO05D008802 1.9e-39 167.9 352 34.9
Phvul.007G122524 Phaseolus vulgaris HOM05D007164 ORTHO05D008802 2.5e-39 167.5 502 31.7
GSVIVG01010946001 Vitis vinifera HOM05D007164 ORTHO05D008802 3.2e-39 167.2 337 36.2
HanXRQChr10g0283971 Helianthus annuus HOM05D007164 ORTHO05D008802 1.6e-38 164.9 538 28.4
arahy.Tifrunner.gnm1.ann1.PB1NMW Arachis hypogaea HOM05D007164 ORTHO05D008802 1.3e-37 161.8 366 35.5
Ah.15g093880 Amaranthus hybridus HOM05D007164 ORTHO05D008802 5.1e-37 159.8 454 31.7
AUR62033184 Chenopodium quinoa HOM05D007164 ORTHO05D008802 5.6e-36 156.4 511 30.5
vmacro14990 Vaccinium macrocarpon HOM05D007164 ORTHO05D008802 9.6e-36 155.6 494 29.1
AL1G12400 Arabidopsis lyrata HOM05D007164 ORTHO05D008802 2.4e-34 151.0 503 28.8
THA.LOC104825977 Tarenaya hassleriana HOM05D007164 ORTHO05D008802 6.9e-34 149.4 503 29.6
AUR62008594 Chenopodium quinoa HOM05D007164 ORTHO05D008802 7.6e-33 146.0 551 28.3
Cc11_g02370 Coffea canephora HOM05D007164 ORTHO05D008802 1.4e-31 141.7 547 29.3
MBI16_g23765_MAGBIO Magnolia biondii HOM05D007164 ORTHO05D008802 2.7e-30 137.5 383 35.8
SalBow3G2762 Salvia bowleyana HOM05D007164 ORTHO05D008802 1.0e-29 135.6 498 26.9
Sc17g0003330 Simmondsia chinensis HOM05D007164 ORTHO05D008802 1.3e-29 135.2 472 30.5
Sopen09g029680 Solanum pennellii HOM05D007164 ORTHO05D008802 3.9e-29 133.7 440 29.8
BcaB03g13496 Brassica carinata HOM05D007164 ORTHO05D008802 5.1e-29 133.3 393 29.3
Oeu047459.1 Olea europaea HOM05D007164 ORTHO05D008802 6.7e-29 132.9 505 25.7
Carub.0001s0209 Capsella rubella HOM05D007164 ORTHO05D008802 8.7e-29 132.5 509 26.3
PGR044G2041 Punica granatum HOM05D007164 ORTHO05D008802 1.1e-28 132.1 188 39.9
Sp1g01950 Schrenkiella parvula HOM05D007164 ORTHO05D008802 5.7e-28 129.8 505 25.7
Thhalv10007546m.g Eutrema salsugineum HOM05D007164 ORTHO05D008802 1.6e-27 128.3 512 27.5
Oeu047456.1 Olea europaea HOM05D007164 ORTHO05D008802 6.3e-27 126.3 434 30.2
C08p00350 Brassica napus HOM05D007164 ORTHO05D008802 8.2e-27 125.9 394 28.4
SGA_v2.0_scaffold2G01414 Striga asiatica HOM05D007164 ORTHO05D008802 1.1e-26 125.6 398 30.4
ATR0053G018 Amborella trichopoda HOM05D007164 ORTHO05D008802 1.4e-26 125.2 441 27.4
BraA08t35648Z Brassica rapa HOM05D007164 ORTHO05D008802 4.1e-26 123.6 508 28.0
A08p37510 Brassica napus HOM05D007164 ORTHO05D008802 6.9e-26 122.9 518 27.8
HPP92_027362 Vanilla planifolia HOM05D007164 ORTHO05D008802 3.4e-25 120.6 158 41.1
PGSC0003DMG401011367 Solanum tuberosum HOM05D007164 ORTHO05D008802 7.7e-25 119.4 420 29.5
Zm00001eb252420 Zea mays HOM05D007164 ORTHO05D008802 7.7e-25 119.4 240 32.1
Aa31LG1G9610 Aethionema arabicum HOM05D007164 ORTHO05D008802 1.7e-24 118.2 191 36.6
MSTRG.21615 Avicennia marina HOM05D007164 ORTHO05D008802 1.7e-24 118.2 442 27.6
BcaC07g36981 Brassica carinata HOM05D007164 ORTHO05D008802 1.4e-23 115.2 394 26.9
BolC8t46836H Brassica oleracea HOM05D007164 ORTHO05D008802 1.9e-23 114.8 400 27.8
CARHR002290 Cardamine hirsuta HOM05D007164 ORTHO05D008802 5.5e-23 113.2 161 38.5
PGR044G2559 Punica granatum HOM05D007164 ORTHO05D008802 9.4e-23 112.5 216 38.9
MELO3C019559.2 Cucumis melo HOM05D007164 ORTHO05D008802 2.7e-22 110.9 285 34.0
Nitab4.5_0009457g0020 Nicotiana tabacum HOM05D007164 ORTHO05D008802 4.6e-22 110.2 461 31.9
Nitab4.5_0005474g0060 Nicotiana tabacum HOM05D000498 ORTHO05D000354 6.1e-22 109.8 464 31.9
Lsat_1_v5_gn_9_3101 Lactuca sativa HOM05D007164 ORTHO05D008802 3.9e-21 107.1 159 38.4
Migut.D00187 Erythranthe guttata HOM05D007164 ORTHO05D008802 5.1e-21 106.7 393 29.0
Peaxi162Scf00067g02422 Petunia axillaris HOM05D007164 ORTHO05D008802 5.1e-21 106.7 366 30.1
unitig_0.g652 Utricularia gibba HOM05D007164 ORTHO05D008802 3.7e-19 100.5 156 34.6
ATR0691G271 Amborella trichopoda HOM05D007164 ORTHO05D008802 1.4e-18 98.6 128 34.4
HanXRQChr10g0283981 Helianthus annuus HOM05D007164 ORTHO05D008802 7.7e-17 92.8 96 45.8
Solyc09g074840.4 Solanum lycopersicum HOM05D007164 ORTHO05D008802 5.0e-16 90.1 370 28.6
Hund18121 Selenicereus undatus HOM05D007164 ORTHO05D008802 6.5e-16 89.7 320 25.6
CSS0046769 Camellia sinensis var. sinensis HOM05D007164 ORTHO05D008802 1.4e-15 88.6 294 30.3
Ca_07266_v3 Cicer arietinum L. HOM05D007164 ORTHO05D008802 3.2e-15 87.4 168 36.3
VMungo0540G1256 Vigna mungo HOM05D007164 ORTHO05D008802 1.0e-13 82.4 91 47.3
AT1G02960 Arabidopsis thaliana HOM05D007164 ORTHO05D008802 1.4e-13 82.0 412 27.2
Mapoly0046s0035 Marchantia polymorpha HOM05D007164 ORTHO05D008802 9.7e-12 75.9 160 28.8
SEGI_29739 Sequoiadendron giganteum HOM05D007164 ORTHO05D008802 1.1e-10 72.4 100 32.0
EL10Ac7g17490 Beta vulgaris HOM05D007164 ORTHO05D008802 2.6e-09 67.8 298 26.8
AagrBONN_evm.TU.Sc2ySwM_117.3923 Anthoceros agrestis HOM05D007164 ORTHO05D008802 3.5e-09 67.4 201 26.9
CiPaw.07G104400 Carya illinoinensis HOM05D007164 ORTHO05D008802 3.5e-09 67.4 161 36.0
Pp3c3_15490 Physcomitrium patens HOM05D007164 ORTHO05D008802 4.5e-09 67.0 122 32.0
Duzib138G1663 Durio zibethinus HOM05D007164 ORTHO05D008802 1.3e-08 65.5 196 29.6


User provided reference genes

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