Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0292311 Rosa chinensis HOM05D006058 ORTHO05D007686 6.1e-76 287.3 138 100.0
FvH4_2g24470 Fragaria vesca HOM05D006058 ORTHO05D007686 5.5e-69 264.2 138 90.6
FAN24G0575 Fragaria x ananassa HOM05D006058 ORTHO05D007686 2.1e-68 262.3 138 89.9
FAN27G3183 Fragaria x ananassa HOM05D006058 ORTHO05D007686 2.7e-68 261.9 138 89.9
CSS0022820 Camellia sinensis var. sinensis HOM05D006058 ORTHO05D007686 3.1e-64 248.4 135 85.2
Oeu032852.1 Olea europaea HOM05D006058 ORTHO05D007686 1.2e-63 246.5 136 85.3
Prupe.8G268000 Prunus persica HOM05D006058 ORTHO05D007686 4.5e-63 244.6 141 81.6
Hma1.2p1_1049F.1_g251900 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 1.0e-62 243.4 135 83.0
Hma1.2p1_0399F.1_g144340 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 3.8e-62 241.5 135 83.0
MD04G1200100 Malus domestica HOM05D006058 ORTHO05D007686 8.5e-62 240.4 144 79.2
vmacro02518 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 1.4e-61 239.6 135 82.2
Psat4g228760 Pisum sativum HOM05D006058 ORTHO05D007686 2.5e-61 238.8 135 78.5
Manes.07G087200 Manihot esculenta HOM05D006058 ORTHO05D007686 9.4e-61 236.9 135 80.7
CANSAT25G3509 Cannabis sativa HOM05D006058 ORTHO05D007686 4.7e-60 234.6 137 78.8
MD12G1212600 Malus domestica HOM05D006058 ORTHO05D007686 1.0e-59 233.4 144 77.1
Potri.014G083500 Populus trichocarpa HOM05D006058 ORTHO05D007686 1.0e-59 233.4 136 78.7
GSVIVG01011025001 Vitis vinifera HOM05D006058 ORTHO05D007686 1.0e-59 233.4 135 77.8
Lj2g0026207 Lotus japonicus HOM05D006058 ORTHO05D007686 2.3e-59 232.3 135 77.0
Sc26g0003460 Simmondsia chinensis HOM05D006058 ORTHO05D007686 3.9e-59 231.5 135 77.0
Duzib211G0114 Durio zibethinus HOM05D006058 ORTHO05D007686 5.1e-59 231.1 135 79.3
TAR636G0052 Trochodendron aralioides HOM05D006058 ORTHO05D007686 5.1e-59 231.1 135 80.7
Eucgr.H01614 Eucalyptus grandis HOM05D006058 ORTHO05D007686 8.8e-59 230.3 135 77.0
Ca_03230_v3 Cicer arietinum L. HOM05D006058 ORTHO05D007686 2.6e-58 228.8 135 77.8
DCAR_018372 Daucus carota HOM05D006058 ORTHO05D007686 3.3e-58 228.4 136 77.2
PGR119G2453 Punica granatum HOM05D006058 ORTHO05D007686 3.3e-58 228.4 136 77.2
Hund02088 Selenicereus undatus HOM05D006058 ORTHO05D007686 4.4e-58 228.0 138 75.4
Nn4g26080 Nelumbo nucifera HOM05D006058 ORTHO05D007686 7.4e-58 227.3 135 77.8
SGA_v2.0_scaffold130G34295 Striga asiatica HOM05D006058 ORTHO05D007686 7.4e-58 227.3 132 81.1
TPR.G16722 Trifolium pratense HOM05D006058 ORTHO05D007686 7.4e-58 227.3 135 74.8
TWI23G1093 Tripterygium wilfordii HOM05D006058 ORTHO05D007686 7.4e-58 227.3 136 78.7
vmacro04594 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 7.4e-58 227.3 131 80.2
Lalb_Chr07g0187491 Lupinus albus HOM05D006058 ORTHO05D007686 9.7e-58 226.9 135 77.8
Prupe.3G123100 Prunus persica HOM05D006058 ORTHO05D007686 1.7e-57 226.1 139 78.4
Thecc.01G288100 Theobroma cacao HOM05D006058 ORTHO05D007686 1.7e-57 226.1 135 77.8
Glyma.01G089000 Glycine max HOM05D006058 ORTHO05D007686 2.2e-57 225.7 135 76.3
Glyma.04G146600 Glycine max HOM05D006058 ORTHO05D007686 2.2e-57 225.7 135 76.3
Peaxi162Scf00273g00034 Petunia axillaris HOM05D006058 ORTHO05D007686 2.8e-57 225.3 135 76.3
Sabra02G0198900 Salix brachista HOM05D006058 ORTHO05D007686 2.8e-57 225.3 136 76.5
TPR.G8807 Trifolium pratense HOM05D006058 ORTHO05D007686 6.3e-57 224.2 135 73.3
Nitab4.5_0009592g0010 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.4e-56 223.0 135 74.8
Nitab4.5_0001499g0140 Nicotiana tabacum HOM05D006058 ORTHO05D007686 4.1e-56 221.5 135 74.8
Phvul.002G050500 Phaseolus vulgaris HOM05D006058 ORTHO05D007686 5.3e-56 221.1 135 74.8
Gohir.D12G007100 Gossypium hirsutum HOM05D006058 ORTHO05D007686 7.0e-56 220.7 135 74.8
PSO407G0089 Papaver somniferum HOM05D006058 ORTHO05D007686 7.0e-56 220.7 139 75.5
Aqoxy4G03219 Aquilegia oxysepala HOM05D006058 ORTHO05D007686 1.2e-55 219.9 135 76.3
Medtr3g010210 Medicago truncatula HOM05D006058 ORTHO05D007686 1.2e-55 219.9 135 71.9
COL.COLO4_08051 Corchorus olitorius HOM05D006058 ORTHO05D007686 1.5e-55 219.5 135 77.0
Gohir.A12G007700 Gossypium hirsutum HOM05D006058 ORTHO05D007686 1.5e-55 219.5 135 74.8
PSO170G2912 Papaver somniferum HOM05D006058 ORTHO05D007686 1.5e-55 219.5 139 74.1
Lju470C11T9 Lonicera japonica HOM05D006058 ORTHO05D007686 2.0e-55 219.2 136 76.5
MBI07_g41269_MAGBIO Magnolia biondii HOM05D006058 ORTHO05D007686 2.6e-55 218.8 135 75.6
Cc01_g20070 Coffea canephora HOM05D006058 ORTHO05D007686 3.5e-55 218.4 141 73.0
HanXRQChr03g0093951 Helianthus annuus HOM05D006058 ORTHO05D007686 3.5e-55 218.4 137 74.5
Peaxi162Scf00026g00313 Petunia axillaris HOM05D006058 ORTHO05D007686 3.5e-55 218.4 138 75.4
CDE02G3716 Ceratophyllum demersum HOM05D006058 ORTHO05D007686 5.9e-55 217.6 136 71.3
MELO3C015303.2 Cucumis melo HOM05D006058 ORTHO05D007686 7.7e-55 217.2 136 72.1
CsaV3_1G038790 Cucumis sativus L. HOM05D006058 ORTHO05D007686 7.7e-55 217.2 136 72.1
AUR62036672 Chenopodium quinoa HOM05D006058 ORTHO05D007686 1.0e-54 216.9 135 74.1
Cfa006057 Carpinus fangiana HOM05D006058 ORTHO05D007686 1.3e-54 216.5 135 74.8
TPR.G22635 Trifolium pratense HOM05D006058 ORTHO05D007686 1.3e-54 216.5 135 71.1
Ah.10g033440 Amaranthus hybridus HOM05D006058 ORTHO05D007686 1.7e-54 216.1 135 71.9
CiPaw.07G098200 Carya illinoinensis HOM05D006058 ORTHO05D007686 1.7e-54 216.1 135 77.0
Nitab4.5_0004672g0030 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.7e-54 216.1 135 73.3
Gorai.008G007300 Gossypium raimondii HOM05D006058 ORTHO05D007686 2.2e-54 215.7 132 74.2
Atru.chr5.1299 Acer truncatum HOM05D006058 ORTHO05D007686 2.9e-54 215.3 140 74.3
Actinidia00707 Actinidia chinensis HOM05D006058 ORTHO05D007686 2.9e-54 215.3 119 84.0
Ciclev10022776m.g Citrus clementina HOM05D006058 ORTHO05D007686 2.9e-54 215.3 137 74.5
unitig_0.g1187 Utricularia gibba HOM05D006058 ORTHO05D007686 5.0e-54 214.5 135 72.6
SalBow3G0902 Salvia bowleyana HOM05D006058 ORTHO05D007686 2.5e-53 212.2 132 75.0
QL12p042454 Quercus lobata HOM05D006058 ORTHO05D007686 5.5e-53 211.1 135 74.8
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 5.5e-53 211.1 119 83.2
Hund29081 Selenicereus undatus HOM05D006058 ORTHO05D007686 7.2e-53 210.7 127 74.8
Hund29083 Selenicereus undatus HOM05D006058 ORTHO05D007686 7.2e-53 210.7 127 74.8
HanXRQChr15g0476421 Helianthus annuus HOM05D006058 ORTHO05D007686 3.6e-52 208.4 138 71.0
Prupe.8G250400 Prunus persica HOM05D006058 ORTHO05D007686 6.1e-52 207.6 109 85.3
AT5G63690 Arabidopsis thaliana HOM05D006058 ORTHO05D007686 6.7e-51 204.1 133 69.9
BraA06t25979Z Brassica rapa HOM05D006058 ORTHO05D007686 1.5e-50 203.0 135 69.6
Thhalv10005102m.g Eutrema salsugineum HOM05D006058 ORTHO05D007686 1.5e-50 203.0 135 71.9
BcaC01g02630 Brassica carinata HOM05D006058 ORTHO05D007686 2.0e-50 202.6 133 69.9
C03p62750 Brassica napus HOM05D006058 ORTHO05D007686 2.0e-50 202.6 133 69.9
BolC3t18529H Brassica oleracea HOM05D006058 ORTHO05D007686 5.7e-50 201.1 133 69.2
AL8G40840 Arabidopsis lyrata HOM05D006058 ORTHO05D007686 7.4e-50 200.7 133 70.7
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 9.7e-50 200.3 119 75.6
A06p30300 Brassica napus HOM05D006058 ORTHO05D007686 9.7e-50 200.3 135 68.1
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 2.2e-49 199.1 119 75.6
CARHR277600 Cardamine hirsuta HOM05D006058 ORTHO05D007686 2.2e-49 199.1 135 69.6
THA.LOC104826323 Tarenaya hassleriana HOM05D006058 ORTHO05D007686 3.7e-49 198.4 135 68.9
Sp2g26790 Schrenkiella parvula HOM05D006058 ORTHO05D007686 1.1e-48 196.8 137 68.6
HPP92_016068 Vanilla planifolia HOM05D006058 ORTHO05D007686 1.1e-48 196.8 135 68.9
Aa31LG10G11090 Aethionema arabicum HOM05D006058 ORTHO05D007686 1.4e-48 196.4 133 69.9
BcaB02g09737 Brassica carinata HOM05D006058 ORTHO05D007686 1.4e-48 196.4 137 67.9
SHI14488 Sapria himalayana HOM05D006058 ORTHO05D007686 1.4e-48 196.4 139 68.3
Solyc12g014020.2 Solanum lycopersicum HOM05D006058 ORTHO05D007686 1.8e-48 196.1 124 75.0
Sopen12g005770 Solanum pennellii HOM05D006058 ORTHO05D007686 1.8e-48 196.1 124 75.0
BcaC03g18221 Brassica carinata HOM05D006058 ORTHO05D007686 2.4e-48 195.7 136 68.4
Carub.0008s2446 Capsella rubella HOM05D006058 ORTHO05D007686 2.4e-48 195.7 136 66.9
PGSC0003DMG400015370 Solanum tuberosum HOM05D006058 ORTHO05D007686 2.4e-48 195.7 124 75.0
BolC2t12363H Brassica oleracea HOM05D006058 ORTHO05D007686 4.1e-48 194.9 136 68.4
Manes.10G061700 Manihot esculenta HOM05D006058 ORTHO05D007686 1.6e-47 193.0 128 71.1
Nn3g21231 Nelumbo nucifera HOM05D006058 ORTHO05D007686 2.6e-47 192.2 116 76.7
Migut.D00240 Erythranthe guttata HOM05D006058 ORTHO05D007686 4.5e-47 191.4 138 67.4
BcaB07g29701 Brassica carinata HOM05D006058 ORTHO05D007686 1.0e-46 190.3 136 66.9
A02p42950 Brassica napus HOM05D006058 ORTHO05D007686 1.0e-46 190.3 136 66.9
C02p62900 Brassica napus HOM05D006058 ORTHO05D007686 1.0e-46 190.3 136 66.9
EL10Ac7g17168 Beta vulgaris HOM05D006058 ORTHO05D007686 1.5e-45 186.4 135 63.0
ClCG03G017360 Citrullus lanatus HOM05D006058 ORTHO05D007686 3.2e-45 185.3 109 76.1
SEGI_21939 Sequoiadendron giganteum HOM05D006058 ORTHO05D007686 4.2e-45 184.9 136 61.0
VMungo1215G3318 Vigna mungo HOM05D006058 ORTHO05D007686 4.2e-45 184.9 116 71.6
Zm00001eb106990 Zea mays HOM05D006058 ORTHO05D007686 7.2e-45 184.1 139 61.2
BraA02t09218Z Brassica rapa HOM05D006058 ORTHO05D007686 1.2e-44 183.3 131 66.4
ECA240G0292 Erigeron canadensis HOM05D006058 ORTHO05D007686 3.6e-44 181.8 119 73.9
Sed0020474 Sechium edule HOM05D006058 ORTHO05D007686 3.0e-43 178.7 108 75.0
Eucgr.H01617 Eucalyptus grandis HOM05D006058 ORTHO05D007686 8.8e-43 177.2 135 62.2
CAN.G964.10 Capsicum annuum HOM05D006058 ORTHO05D007686 1.2e-39 166.8 131 62.6
AagrBONN_evm.TU.Sc2ySwM_369.269 Anthoceros agrestis HOM05D006058 ORTHO05D007686 6.1e-36 154.5 125 54.4
Mapoly0068s0046 Marchantia polymorpha HOM05D006058 ORTHO05D007686 6.8e-35 151.0 116 57.8
ATR0225G019 Amborella trichopoda HOM05D006058 ORTHO05D007686 2.0e-34 149.4 111 64.0
EL10Ac3g06921 Beta vulgaris HOM05D006058 ORTHO05D007686 2.0e-34 149.4 92 72.8
AUR62034597 Chenopodium quinoa HOM05D006058 ORTHO05D007686 2.6e-34 149.1 95 73.7
SMO244G0033 Selaginella moellendorffii HOM05D006058 ORTHO05D007686 3.4e-34 148.7 129 52.7
Mapoly0122s0023 Marchantia polymorpha HOM05D006058 ORTHO05D007686 9.8e-34 147.1 120 54.2
Pp3c3_34830 Physcomitrium patens HOM05D006058 ORTHO05D007686 1.7e-33 146.4 131 51.1
CBR_g26410 Chara braunii HOM05D006058 ORTHO05D007686 2.8e-33 145.6 117 54.7
BolC4t22707H Brassica oleracea HOM05D006058 ORTHO05D007686 8.3e-33 144.1 103 63.1
TAR365G0318 Trochodendron aralioides HOM05D006058 ORTHO05D007686 5.4e-32 141.4 82 73.2
Sc05g0004330 Simmondsia chinensis HOM05D006058 ORTHO05D007686 1.5e-29 133.3 86 69.8
Aa31LG1G18150 Aethionema arabicum HOM05D000706 ORTHO05D001554 9.5e-29 130.6 84 70.2
CBR_g24266 Chara braunii HOM05D006058 ORTHO05D007686 7.5e-26 120.9 119 47.1
MBI07_g41268_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 6.3e-25 117.9 90 61.1
QL12p023442 Quercus lobata HOM05D006058 ORTHO05D007686 3.2e-16 89.0 87 54.0
vmacro09159 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 7.0e-16 87.8 73 57.5
CsaV3_7G018800 Cucumis sativus L. HOM05D006058 ORTHO05D000001 1.9e-08 63.2 60 48.3
CAN.G27.69 Capsicum annuum HOM05D005779 ORTHO05D007040 3.2e-08 62.4 75 45.3
ClCG09G006620 Citrullus lanatus HOM05D032925 ORTHO05D034760 5.1e-06 55.1 103 35.0


User provided reference genes

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