Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 2.0e-239 832.0 417 100.0
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 6.7e-219 763.8 417 92.1
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.3e-218 761.5 417 91.8
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 9.6e-218 760.0 417 91.6
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.1e-216 755.0 417 90.6
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 4.5e-215 751.1 417 90.6
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 7.5e-170 600.9 419 74.2
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 2.5e-157 559.3 419 69.5
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 2.8e-148 529.3 419 67.3
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 1.0e-134 484.2 421 60.6
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 5.8e-130 468.4 420 60.0
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 1.3e-129 467.2 423 59.3
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 2.4e-128 463.0 425 60.0
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 1.3e-126 457.2 423 58.9
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 1.3e-121 440.7 432 57.2
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 4.6e-119 432.2 421 57.7
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 6.0e-119 431.8 440 55.9
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 7.3e-117 424.9 416 57.0
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 4.0e-115 419.1 432 52.3
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 2.0e-114 416.8 420 54.0
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 9.9e-114 414.5 423 53.7
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.0e-110 404.4 436 53.4
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.8e-110 403.7 421 53.9
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 5.1e-110 402.1 422 53.3
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.9e-109 400.2 424 53.1
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 2.8e-108 396.4 429 50.8
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 3.7e-108 396.0 429 51.3
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 3.7e-108 396.0 422 51.7
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.8e-107 393.7 419 51.3
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 3.1e-107 392.9 424 51.4
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 7.6e-106 388.3 420 52.1
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.8e-105 386.0 424 50.0
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.1e-104 384.4 394 53.3
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 4.2e-104 382.5 424 50.0
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 5.5e-104 382.1 424 50.0
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.6e-103 380.6 423 49.6
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 4.6e-103 379.0 421 50.6
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 3.9e-102 375.9 418 50.2
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 5.1e-102 375.6 421 51.3
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 1.1e-101 374.4 422 51.7
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 1.3e-100 370.9 431 49.9
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 6.2e-100 368.6 356 57.0
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 1.0e-97 361.3 426 51.4
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 1.0e-97 361.3 437 47.6
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 3.8e-97 359.4 426 51.2
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.6e-95 354.0 419 48.4
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 3.5e-95 352.8 427 49.2
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 6.0e-95 352.1 452 46.5
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 7.9e-95 351.7 341 56.9
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.0e-94 351.3 419 48.0
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 1.8e-94 350.5 434 45.4
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 3.0e-94 349.7 429 49.0
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.9e-93 347.1 392 50.5
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 1.1e-91 341.3 396 48.2
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 1.2e-90 337.8 431 44.3
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.5e-90 337.4 325 57.2
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 2.0e-90 337.0 438 47.3
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.4e-90 336.3 419 47.3
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 3.4e-90 336.3 426 48.4
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 1.0e-89 334.7 422 48.6
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 5.0e-89 332.4 430 45.6
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 5.0e-89 332.4 418 48.6
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 6.5e-89 332.0 423 46.6
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 7.2e-88 328.6 427 47.5
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 7.9e-87 325.1 424 47.4
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.3e-86 324.3 426 48.1
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 3.0e-86 323.2 417 44.4
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 3.0e-86 323.2 443 42.9
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 3.9e-86 322.8 434 43.3
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 5.1e-86 322.4 424 46.7
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 5.1e-86 322.4 429 42.4
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 8.7e-86 321.6 442 45.5
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 8.7e-86 321.6 422 46.0
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.9e-85 320.5 433 43.2
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 2.5e-85 320.1 432 42.1
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 3.3e-85 319.7 423 45.6
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 3.3e-85 319.7 432 42.1
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 5.7e-85 318.9 424 46.9
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 5.7e-85 318.9 478 42.7
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 2.8e-84 316.6 425 45.4
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 6.3e-84 315.5 421 46.1
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 1.4e-83 314.3 435 44.8
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 6.9e-83 312.0 430 45.3
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 9.1e-83 311.6 425 45.4
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 9.1e-83 311.6 425 45.4
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 2.0e-82 310.5 439 43.7
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 2.0e-82 310.5 449 45.0
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 4.5e-82 309.3 421 44.4
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 1.0e-81 308.1 433 46.0
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 2.9e-81 306.6 447 44.1
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.1e-80 304.7 425 43.1
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 3.2e-80 303.1 322 52.8
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 1.4e-78 297.7 426 43.7
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 8.8e-78 295.0 409 43.3
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 2.6e-77 293.5 351 47.3
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 2.6e-77 293.5 423 42.1
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.7e-76 290.8 423 42.3
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 4.8e-76 289.3 423 42.1
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 8.2e-76 288.5 423 41.6
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 2.4e-75 287.0 423 41.4
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 2.0e-74 283.9 419 39.1
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 2.6e-74 283.5 423 41.8
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 3.4e-74 283.1 419 42.0
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.7e-73 280.8 425 41.2
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 1.9e-72 277.3 414 41.3
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 1.2e-71 274.6 422 41.5
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 6.1e-71 272.3 424 40.3
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.0e-70 271.6 439 42.4
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.1e-69 268.1 435 40.9
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 3.3e-69 266.5 423 40.4
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 2.6e-66 256.9 416 40.9
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 5.9e-66 255.8 429 38.9
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 1.3e-65 254.6 423 39.2
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 7.2e-64 248.8 424 38.4
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 9.4e-64 248.4 417 38.1
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.2e-63 248.1 272 49.3
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 2.1e-63 247.3 272 48.5
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 4.0e-62 243.0 414 38.4
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.8e-59 234.2 409 38.4
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 2.4e-59 233.8 409 38.6
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 5.3e-59 232.6 418 39.0
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 1.9e-56 224.2 172 66.3
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 3.2e-56 223.4 403 35.7
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.2e-55 221.5 416 35.8
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 6.1e-55 219.2 339 42.5
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 3.0e-54 216.9 301 45.2
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 4.0e-54 216.5 351 41.0
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 2.2e-52 210.7 372 37.9
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 2.9e-41 173.7 439 31.4
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 5.0e-41 172.9 419 32.5
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 3.6e-39 166.8 170 53.5
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 8.9e-38 162.2 225 44.4
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 2.3e-33 147.5 209 43.5
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 2.8e-31 140.6 413 31.0
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.4e-30 138.3 151 50.3
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 5.2e-30 136.3 182 45.1
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 1.5e-29 134.8 151 49.7
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 1.5e-29 134.8 214 38.8
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 1.5e-29 134.8 151 49.7
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 5.8e-29 132.9 142 50.7
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 8.3e-28 129.0 86 77.9
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 1.1e-19 102.1 417 24.2
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 5.4e-19 99.8 128 50.0
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 2.9e-12 77.4 201 29.9
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 2.4e-11 74.3 62 51.6
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 3.2e-11 73.9 65 61.5
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 7.1e-11 72.8 112 43.8
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 3.5e-10 70.5 98 36.7
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 6.0e-10 69.7 79 44.3
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 7.8e-10 69.3 80 41.2
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 1.7e-09 68.2 65 50.8
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 1.7e-09 68.2 65 50.8
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 1.7e-09 68.2 65 50.8
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.7e-09 68.2 83 43.4
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 2.3e-09 67.8 136 36.0
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.1e-08 65.5 54 55.6
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 5.6e-08 63.2 64 45.3
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 2.1e-07 61.2 64 48.4
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.8e-06 58.2 81 45.7


User provided reference genes

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