Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0291551 Rosa chinensis HOM05D002969 ORTHO05D003308 0.0e+00 1521.9 752 100.0
FAN24G1542 Fragaria x ananassa HOM05D002969 ORTHO05D003308 0.0e+00 1122.5 755 77.1
FvH4_2g23920 Fragaria vesca HOM05D002969 ORTHO05D003308 0.0e+00 1098.2 754 75.5
FAN15G1247 Fragaria x ananassa HOM05D002969 ORTHO05D003308 5.1e-312 1073.5 755 74.8
FAN27G1917 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.2e-271 939.9 762 67.3
Prupe.8G262800 Prunus persica HOM05D002969 ORTHO05D003308 1.1e-171 607.8 693 51.4
MD11G1308600 Malus domestica HOM05D002969 ORTHO05D003308 1.3e-156 557.8 927 39.8
Prupe.3G042500 Prunus persica HOM05D002969 ORTHO05D003308 2.2e-143 513.8 912 39.4
MD09G1184300 Malus domestica HOM05D002969 ORTHO05D003308 9.4e-139 498.4 804 40.7
RcHm_v2.0_Chr2g0145161 Rosa chinensis HOM05D002969 ORTHO05D003308 3.6e-130 469.9 829 39.2
FvH4_6g34630 Fragaria vesca HOM05D002969 ORTHO05D003308 1.6e-125 454.5 828 38.6
FAN09G2022 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.7e-125 453.8 828 38.5
FAN14G5519 Fragaria x ananassa HOM05D002969 ORTHO05D003308 3.3e-123 446.8 890 37.0
FAN05G1938 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.8e-118 431.0 794 37.8
Haze_16025 Corylus avellana HOM05D002969 ORTHO05D003308 1.1e-115 421.8 886 34.7
QL05p007828 Quercus lobata HOM05D002969 ORTHO05D003308 5.2e-113 412.9 811 36.5
Potri.003G064000 Populus trichocarpa HOM05D002969 ORTHO05D003308 8.6e-108 395.6 895 32.8
Thecc.06G119100 Theobroma cacao HOM05D002969 ORTHO05D003308 3.6e-106 390.2 820 35.2
Actinidia32183 Actinidia chinensis HOM05D002969 ORTHO05D003308 2.3e-105 387.5 827 34.1
Sabra03G0037600 Salix brachista HOM05D002969 ORTHO05D003308 8.9e-105 385.6 817 34.3
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 9.8e-104 382.1 773 35.1
Ciclev10024687m.g Citrus clementina HOM05D002969 ORTHO05D003308 4.9e-103 379.8 877 32.7
ClCG05G007230 Citrullus lanatus HOM05D002969 ORTHO05D003308 8.3e-103 379.0 804 33.3
Atru.chr1.3951 Acer truncatum HOM05D002969 ORTHO05D003308 6.0e-101 372.9 807 34.8
Lj3g0017600 Lotus japonicus HOM05D002969 ORTHO05D003308 6.0e-101 372.9 853 33.3
Manes.11G021000 Manihot esculenta HOM05D002969 ORTHO05D003308 1.7e-100 371.3 812 33.4
Gorai.012G011500 Gossypium raimondii HOM05D002969 ORTHO05D003308 5.1e-100 369.8 803 33.6
Ca_13957_v3 Cicer arietinum L. HOM05D002969 ORTHO05D003308 6.6e-100 369.4 943 32.0
Gohir.D04G009700 Gossypium hirsutum HOM05D002969 ORTHO05D003308 6.6e-100 369.4 802 33.7
CsaV3_3G015990 Cucumis sativus L. HOM05D002969 ORTHO05D003308 4.3e-99 366.7 795 33.5
Gohir.A05G405950 Gossypium hirsutum HOM05D002969 ORTHO05D003308 7.3e-99 365.9 795 33.6
COL.COLO4_30764 Corchorus olitorius HOM05D002969 ORTHO05D003308 2.3e-97 360.9 831 33.8
TAR626G1632 Trochodendron aralioides HOM05D002969 ORTHO05D003308 8.9e-97 359.0 843 33.1
Sed0027017 Sechium edule HOM05D002969 ORTHO05D003308 3.4e-96 357.1 817 33.5
Duzib235G1299 Durio zibethinus HOM05D002969 ORTHO05D003308 1.3e-95 355.1 803 33.9
GSVIVG01016771001 Vitis vinifera HOM05D002969 ORTHO05D003308 1.7e-95 354.8 787 33.2
CANSAT54G2721 Cannabis sativa HOM05D002969 ORTHO05D003308 2.2e-95 354.4 783 35.1
Medtr3g005240 Medicago truncatula HOM05D002969 ORTHO05D003308 4.9e-95 353.2 779 32.9
TWI31G0668 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 1.4e-94 351.7 834 33.6
Cc02_g14940 Coffea canephora HOM05D002969 ORTHO05D003308 2.4e-94 350.9 801 33.5
TPR.G25535 Trifolium pratense HOM05D002969 ORTHO05D003308 2.7e-93 347.4 848 32.2
TPR.G14707 Trifolium pratense HOM05D002969 ORTHO05D003308 6.6e-92 342.8 803 32.4
Glyma.19G263900 Glycine max HOM05D002969 ORTHO05D003308 2.8e-90 337.4 803 33.4
arahy.Tifrunner.gnm1.ann1.8DY1VB Arachis hypogaea HOM05D002969 ORTHO05D003308 6.2e-90 336.3 778 33.0
Eucgr.J02821 Eucalyptus grandis HOM05D002969 ORTHO05D003308 1.4e-89 335.1 831 30.9
Psat1g003120 Pisum sativum HOM05D002969 ORTHO05D003308 1.4e-89 335.1 814 31.6
arahy.Tifrunner.gnm1.ann1.MA4BJF Arachis hypogaea HOM05D002969 ORTHO05D003308 1.8e-89 334.7 779 32.9
Rhsim08G0238100 Rhododendron simsii HOM05D002969 ORTHO05D003308 3.1e-89 334.0 863 31.9
Lalb_Chr10g0094641 Lupinus albus HOM05D002969 ORTHO05D003308 6.8e-89 332.8 810 32.3
Glyma.02G000100 Glycine max HOM05D002969 ORTHO05D003308 8.9e-89 332.4 802 33.0
COL.COLO4_27975 Corchorus olitorius HOM05D002969 ORTHO05D003308 1.2e-88 332.0 801 32.5
MSTRG.10956 Avicennia marina HOM05D002969 ORTHO05D003308 5.8e-88 329.7 803 32.1
Glyma.16G219900 Glycine max HOM05D002969 ORTHO05D003308 5.8e-88 329.7 797 32.2
TWI31G0627 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 5.8e-88 329.7 639 37.1
DCAR_016128 Daucus carota HOM05D002969 ORTHO05D003308 2.1e-85 321.2 823 29.8
Lj7C292T8 Lonicera japonica HOM05D002969 ORTHO05D003308 4.6e-85 320.1 813 32.1
CSS0043728 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 7.8e-85 319.3 779 32.2
Phvul.007G234600 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 5.1e-84 316.6 862 30.3
CiPaw.01G219300 Carya illinoinensis HOM05D002969 ORTHO05D003308 2.8e-82 310.8 520 39.4
Migut.I01069 Erythranthe guttata HOM05D002969 ORTHO05D003308 2.8e-82 310.8 789 31.3
MBI06_g12843_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 6.2e-82 309.7 722 32.5
Haze_15990 Corylus avellana HOM05D002969 ORTHO05D003308 7.6e-80 302.8 657 34.9
Nn7g36584 Nelumbo nucifera HOM05D002969 ORTHO05D003308 1.3e-79 302.0 817 30.2
Aqoxy7G01394 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 2.2e-79 301.2 870 29.2
Cfa003558 Carpinus fangiana HOM05D002969 ORTHO05D003308 2.2e-79 301.2 708 33.6
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.9e-79 300.8 624 36.5
THA.LOC104813957 Tarenaya hassleriana HOM05D002969 ORTHO05D003308 2.9e-79 300.8 792 30.4
Lsat_1_v5_gn_5_75740 Lactuca sativa HOM05D002969 ORTHO05D003308 1.1e-78 298.9 878 29.4
Sp3g22890 Schrenkiella parvula HOM05D002969 ORTHO05D003308 1.4e-78 298.5 793 30.6
CAN.G397.51 Capsicum annuum HOM05D002969 ORTHO05D003308 1.9e-78 298.1 823 29.8
Sopen09g004560 Solanum pennellii HOM05D002969 ORTHO05D003308 3.2e-78 297.4 818 30.1
AL1G29730 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 7.1e-78 296.2 782 31.6
PGR102G0955 Punica granatum HOM05D002969 ORTHO05D003308 1.6e-77 295.0 810 30.0
Dinv30673 Davidia involucrata HOM05D002969 ORTHO05D003308 4.6e-77 293.5 528 38.4
Dinv34333 Davidia involucrata HOM05D002969 ORTHO05D003308 4.6e-77 293.5 528 38.4
Oeu007563.1 Olea europaea HOM05D002969 ORTHO05D003308 4.6e-77 293.5 784 31.6
AT1G17450 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 6.0e-77 293.1 801 30.6
BcaB06g26734 Brassica carinata HOM05D002969 ORTHO05D003308 1.0e-76 292.4 794 30.2
Carub.0001s1721 Capsella rubella HOM05D002969 ORTHO05D003308 1.3e-76 292.0 796 30.5
Solyc09g009800.3 Solanum lycopersicum HOM05D002969 ORTHO05D003308 1.7e-76 291.6 819 29.9
AL2G17610 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 1.1e-75 288.9 769 29.4
Aa31LG7G2260 Aethionema arabicum HOM05D002969 ORTHO05D003308 3.3e-75 287.3 785 29.3
CARHR018040 Cardamine hirsuta HOM05D002969 ORTHO05D003308 5.6e-75 286.6 815 29.7
HanXRQChr10g0301861 Helianthus annuus HOM05D002969 ORTHO05D003308 9.6e-75 285.8 937 28.1
SGA_v2.0_scaffold71G23857 Striga asiatica HOM05D002969 ORTHO05D003308 9.6e-75 285.8 891 29.3
Lsat_1_v5_gn_1_38040 Lactuca sativa HOM05D002969 ORTHO05D003308 2.8e-74 284.3 848 27.2
A07p07070 Brassica napus HOM05D002969 ORTHO05D003308 2.4e-73 281.2 846 29.4
AUR62010285 Chenopodium quinoa HOM05D002969 ORTHO05D003308 2.4e-73 281.2 782 29.7
Thhalv10017997m.g Eutrema salsugineum HOM05D002969 ORTHO05D003308 4.0e-73 280.4 822 29.9
Nitab4.5_0000794g0160 Nicotiana tabacum HOM05D002969 ORTHO05D003308 2.0e-72 278.1 786 30.0
Carub.0002s0593 Capsella rubella HOM05D002969 ORTHO05D003308 8.4e-71 272.7 812 29.6
Duzib192G0334 Durio zibethinus HOM05D002969 ORTHO05D003308 1.1e-70 272.3 679 33.1
PSO447G0254 Papaver somniferum HOM05D002969 ORTHO05D003308 7.9e-69 266.2 817 28.4
Peaxi162Scf00068g02519 Petunia axillaris HOM05D002969 ORTHO05D003308 7.9e-69 266.2 813 28.7
EL10Ac9g22289 Beta vulgaris HOM05D002969 ORTHO05D003308 1.0e-68 265.8 802 29.6
DCAR_022697 Daucus carota HOM05D002969 ORTHO05D003308 1.8e-68 265.0 832 25.5
SalBow6G7155 Salvia bowleyana HOM05D002969 ORTHO05D003308 2.8e-66 257.7 832 28.0
Peaxi162Scf00559g00315 Petunia axillaris HOM05D002969 ORTHO05D003308 8.1e-66 256.1 772 28.2
ECA247G3059 Erigeron canadensis HOM05D002969 ORTHO05D003308 1.4e-65 255.4 943 26.7
CDE02G2049 Ceratophyllum demersum HOM05D002969 ORTHO05D003308 9.0e-65 252.7 813 28.3
BcaC06g35804 Brassica carinata HOM05D002969 ORTHO05D003308 3.4e-64 250.8 790 29.1
AUR62039104 Chenopodium quinoa HOM05D002969 ORTHO05D003308 1.0e-63 249.2 792 28.7
BraA07t28494Z Brassica rapa HOM05D002969 ORTHO05D003308 1.9e-62 245.0 784 28.6
ECA240G4395 Erigeron canadensis HOM05D002969 ORTHO05D003308 1.2e-61 242.3 785 27.8
Phvul.011G011400 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 4.6e-61 240.4 1018 25.0
BolC7t41532H Brassica oleracea HOM05D002969 ORTHO05D003308 1.0e-60 239.2 784 28.6
Atru.chr4.3098 Acer truncatum HOM05D002969 ORTHO05D003308 2.8e-58 231.1 404 38.6
AT1G58766 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 1.3e-55 222.2 700 27.6
AT1G59077 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 1.3e-55 222.2 700 27.6
AT1G59453 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 1.3e-55 222.2 700 27.6
Lj5C38T4 Lonicera japonica HOM05D002969 ORTHO05D003308 1.3e-55 222.2 692 29.0
Ah.01g018170 Amaranthus hybridus HOM05D002969 ORTHO05D003308 2.2e-55 221.5 756 28.3
Cpa.g.sc34.72 Carica papaya HOM05D002969 ORTHO05D003308 1.9e-54 218.4 406 35.2
PSO210G1276 Papaver somniferum HOM05D002969 ORTHO05D003308 3.5e-53 214.2 515 32.0
Thecc.06G115400 Theobroma cacao HOM05D002969 ORTHO05D003308 5.1e-52 210.3 698 29.8
Ah.01g009920 Amaranthus hybridus HOM05D002969 ORTHO05D003308 6.7e-52 209.9 758 27.2
Peaxi162Scf00006g00210 Petunia axillaris HOM05D002969 ORTHO05D003308 8.7e-52 209.5 362 37.6
PSO017G1981 Papaver somniferum HOM05D002969 ORTHO05D003308 1.9e-51 208.4 515 31.1
CAN.G947.7 Capsicum annuum HOM05D002969 ORTHO05D000105 2.5e-51 208.0 481 33.3
C07p10660 Brassica napus HOM05D002969 ORTHO05D003308 3.7e-50 204.1 499 32.3
Sc18g0005650 Simmondsia chinensis HOM05D002969 ORTHO05D003308 1.2e-48 199.1 736 26.6
Os02g0633100 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 1.5e-48 198.7 916 23.6
Ah.01g009880 Amaranthus hybridus HOM05D002969 ORTHO05D003308 5.9e-48 196.8 740 27.2
Nitab4.5_0010825g0010 Nicotiana tabacum HOM05D002969 ORTHO05D003308 1.7e-47 195.3 696 26.1
ATR0618G078 Amborella trichopoda HOM05D002969 ORTHO05D003308 2.2e-47 194.9 751 24.8
Gorai.010G233800 Gossypium raimondii HOM05D002969 ORTHO05D003308 5.0e-39 167.2 543 29.7
Glyma.19G019300 Glycine max HOM05D002969 ORTHO05D003308 1.6e-37 162.2 201 48.3
Zm00001eb254800 Zea mays HOM05D002969 ORTHO05D003308 2.7e-37 161.4 459 28.1
Gohir.D06G200300 Gossypium hirsutum HOM05D002969 ORTHO05D003308 7.9e-37 159.8 546 29.1
MBI06_g44919_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 1.4e-36 159.1 803 24.8
vmacro15029 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 5.1e-36 157.1 208 45.2
unitig_26.g8927 Utricularia gibba HOM05D002969 ORTHO05D003308 1.3e-34 152.5 454 29.7
vmacro15026 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 8.2e-34 149.8 153 51.6
Psat0s1819g0040 Pisum sativum HOM05D002969 ORTHO05D003308 1.7e-31 142.1 405 29.6
Psat5g267240 Pisum sativum HOM05D002969 ORTHO05D003308 1.7e-31 142.1 405 29.6
SEGI_12678 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 2.9e-31 141.4 459 25.9
Glyma.17G219802 Glycine max HOM05D002969 ORTHO05D003308 5.5e-30 137.1 136 54.4
PGSC0003DMG401008881 Solanum tuberosum HOM05D002969 ORTHO05D003308 1.0e-28 132.9 173 47.4
SMO119G0293 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 3.3e-27 127.9 739 21.7
Gohir.A06G192400 Gossypium hirsutum HOM05D002969 ORTHO05D003308 4.8e-26 124.0 532 28.0
COL.COLO4_30697 Corchorus olitorius HOM05D002969 ORTHO05D003308 6.3e-26 123.6 274 35.0
BcaC06g34331 Brassica carinata HOM05D002969 ORTHO05D003308 8.2e-26 123.2 165 43.0
BolC7t43569H Brassica oleracea HOM05D002969 ORTHO05D003308 8.2e-26 123.2 165 43.0
SMO196G0130 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 1.2e-24 119.4 699 22.2
C07p30270 Brassica napus HOM05D002969 ORTHO05D003308 1.7e-23 115.5 123 46.3
Zm00001eb254750 Zea mays HOM05D002969 ORTHO05D003308 2.9e-23 114.8 230 33.0
Aqoxy4G01957 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 5.0e-23 114.0 106 50.0
Zm00001eb254710 Zea mays HOM05D002969 ORTHO05D003308 1.1e-22 112.8 170 36.5
Cpa.g.sc34.70 Carica papaya HOM05D002969 ORTHO05D003308 1.8e-20 105.5 123 48.0
Zm00001eb047190 Zea mays HOM05D002969 ORTHO05D003308 4.0e-20 104.4 228 31.6
Zm00001eb247940 Zea mays HOM05D002969 ORTHO05D003308 5.2e-20 104.0 151 41.7
SEGI_00835 Sequoiadendron giganteum HOM05D002969 ORTHO05D011582 8.8e-20 103.2 178 33.1
ATR0568G030 Amborella trichopoda HOM05D002969 ORTHO05D003308 2.2e-18 98.6 189 34.4
Zm00001eb011340 Zea mays HOM05D002969 ORTHO05D003308 6.3e-18 97.1 95 48.4
Mapoly0002s0195 Marchantia polymorpha HOM05D002969 ORTHO05D003308 2.4e-17 95.1 175 35.4
Gohir.A01G106450 Gossypium hirsutum HOM05D002969 ORTHO05D003308 9.1e-17 93.2 177 35.0
Medtr8g062660 Medicago truncatula HOM05D000007 ORTHO05D003308 9.1e-17 93.2 159 37.7
Zm00001eb254630 Zea mays HOM05D002969 ORTHO05D003308 1.2e-16 92.8 149 34.9
Pp3c4_16500 Physcomitrium patens HOM05D002969 ORTHO05D003308 1.6e-16 92.4 328 25.6
PSO700G0258 Papaver somniferum HOM05D002969 ORTHO05D003308 1.3e-15 89.4 115 43.5
AagrBONN_evm.TU.Sc2ySwM_344.4533 Anthoceros agrestis HOM05D002969 ORTHO05D003308 2.2e-15 88.6 466 21.7
Peaxi162Scf00006g00026 Petunia axillaris HOM05D002969 ORTHO05D003308 6.5e-15 87.0 105 46.7
Zm00001eb254720 Zea mays HOM05D002969 ORTHO05D003308 7.2e-14 83.6 144 36.1
HPP92_011314 Vanilla planifolia HOM05D002969 ORTHO05D003308 1.2e-13 82.8 59 57.6
Dinv04036 Davidia involucrata HOM05D002969 ORTHO05D003308 3.6e-13 81.3 120 38.3
Dinv30672 Davidia involucrata HOM05D002969 ORTHO05D003308 3.6e-13 81.3 120 38.3
Dinv34332 Davidia involucrata HOM05D002969 ORTHO05D003308 3.6e-13 81.3 120 38.3
CSS0047313 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 1.0e-12 79.7 137 33.6
VMungo1309G1116 Vigna mungo HOM05D002969 ORTHO05D003308 1.5e-11 75.9 101 40.6
AT1G59470 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 2.0e-11 75.5 158 29.7
MELO3C006797.2 Cucumis melo HOM05D002969 ORTHO05D003308 7.5e-11 73.6 110 36.4
Migut.E00647 Erythranthe guttata HOM05D002969 ORTHO05D003308 2.2e-10 72.0 106 39.6
COL.COLO4_30698 Corchorus olitorius HOM05D002969 ORTHO05D003308 2.8e-10 71.6 111 33.3
Rhsim08G0238600 Rhododendron simsii HOM05D042098 ORTHO05D003308 4.9e-10 70.9 151 35.8
CDE04G0067 Ceratophyllum demersum HOM05D007059 ORTHO05D009155 3.1e-09 68.2 94 42.6
SEGI_24599 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 3.1e-09 68.2 96 31.2
SHI10580 Sapria himalayana HOM05D002969 ORTHO05D000023 7.0e-09 67.0 92 34.8
HPP92_011313 Vanilla planifolia HOM05D002969 ORTHO05D003308 7.0e-09 67.0 67 41.8
Gorai.002G118300 Gossypium raimondii HOM05D002969 ORTHO05D003308 1.6e-08 65.9 127 37.0
PSO210G6259 Papaver somniferum HOM05D002969 ORTHO05D003308 3.5e-08 64.7 103 33.0
Aqoxy4G01956 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 4.5e-08 64.3 75 40.0
Glyma.12G000400 Glycine max HOM05D002969 ORTHO05D003308 5.9e-08 63.9 227 27.3
VMungo0540G1895 Vigna mungo HOM05D002969 ORTHO05D003308 5.9e-08 63.9 65 52.3
PSO017G0852 Papaver somniferum HOM05D002969 ORTHO05D003308 7.7e-08 63.5 81 37.0
Rhsim08G0220000 Rhododendron simsii HOM05D002969 ORTHO05D003308 1.9e-06 58.9 64 62.5
Zm00001eb254660 Zea mays HOM05D002969 ORTHO05D003308 9.5e-06 56.6 90 28.9


User provided reference genes

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