Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 1.6e-66 256.5 196 100.0
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 1.1e-38 164.1 224 68.3
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.7e-37 159.5 223 69.1
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.8e-36 156.8 208 56.7
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.6e-34 150.2 223 66.8
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.8e-34 148.7 222 66.7
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 3.1e-33 146.0 247 62.8
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 8.4e-23 111.3 196 56.1
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 3.0e-20 102.8 175 53.1
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 1.9e-19 100.1 183 51.4
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 8.2e-18 94.7 203 36.5
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 9.0e-17 91.3 198 38.4
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 9.0e-17 91.3 194 44.3
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 1.5e-16 90.5 191 37.7
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 1.5e-16 90.5 204 39.7
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 1.5e-16 90.5 204 39.7
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 5.9e-16 88.6 205 54.1
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 7.7e-16 88.2 194 35.6
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 7.7e-16 88.2 204 34.3
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 2.2e-15 86.7 201 38.3
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 2.2e-15 86.7 54 59.3
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 2.9e-15 86.3 198 36.4
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 5.0e-15 85.5 194 38.1
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 5.0e-15 85.5 185 40.5
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 6.5e-15 85.1 199 43.2
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 1.1e-14 84.3 194 41.2
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.4e-14 84.0 51 62.7
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 1.4e-14 84.0 202 38.1
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 3.2e-14 82.8 52 61.5
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 3.2e-14 82.8 196 48.0
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 3.2e-14 82.8 205 50.7
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 4.2e-14 82.4 193 42.5
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 5.5e-14 82.0 188 51.1
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 5.5e-14 82.0 193 44.0
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 7.2e-14 81.6 52 59.6
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 7.2e-14 81.6 192 51.6
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 7.2e-14 81.6 51 58.8
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 7.2e-14 81.6 184 42.9
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 7.2e-14 81.6 172 37.8
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 9.4e-14 81.3 196 42.9
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 1.2e-13 80.9 172 37.8
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 2.1e-13 80.1 51 58.8
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 2.1e-13 80.1 50 60.0
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 2.7e-13 79.7 180 43.3
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 2.7e-13 79.7 205 44.9
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 7.9e-13 78.2 48 62.5
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 7.9e-13 78.2 48 62.5
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 7.9e-13 78.2 48 62.5
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 7.9e-13 78.2 59 52.5
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 7.9e-13 78.2 51 54.9
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 7.9e-13 78.2 52 53.8
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.4e-12 77.4 51 56.9
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 1.8e-12 77.0 175 41.1
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 2.3e-12 76.6 187 56.1
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 3.0e-12 76.3 173 42.2
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 3.0e-12 76.3 48 60.4
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 3.0e-12 76.3 199 41.2
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 3.0e-12 76.3 196 37.8
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 3.0e-12 76.3 194 26.8
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 3.9e-12 75.9 52 50.0
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 3.9e-12 75.9 189 33.9
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 6.7e-12 75.1 48 58.3
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 6.7e-12 75.1 48 58.3
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 6.7e-12 75.1 195 31.8
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 8.8e-12 74.7 166 50.6
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 8.8e-12 74.7 49 57.1
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 1.1e-11 74.3 209 56.5
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 1.5e-11 73.9 48 58.3
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 1.5e-11 73.9 48 58.3
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 1.5e-11 73.9 48 58.3
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 1.5e-11 73.9 48 58.3
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.5e-11 73.9 51 56.9
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.5e-11 73.9 51 52.9
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 2.0e-11 73.6 197 40.6
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 2.5e-11 73.2 202 37.6
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 2.5e-11 73.2 190 57.9
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.5e-11 73.2 192 36.5
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 3.3e-11 72.8 48 56.2
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 3.3e-11 72.8 48 56.2
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 3.3e-11 72.8 48 56.2
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 4.3e-11 72.4 179 52.5
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 9.7e-11 71.2 188 37.2
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 9.7e-11 71.2 53 50.9
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 1.3e-10 70.9 48 50.0
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 1.3e-10 70.9 55 47.3
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 1.3e-10 70.9 48 52.1
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.7e-10 70.5 203 37.4
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 1.7e-10 70.5 47 51.1
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 1.7e-10 70.5 57 47.4
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 1.7e-10 70.5 46 56.5
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 2.2e-10 70.1 56 48.2
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 2.2e-10 70.1 194 43.3
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 2.8e-10 69.7 209 34.0
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 2.8e-10 69.7 209 34.0
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 2.8e-10 69.7 186 45.2
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 2.8e-10 69.7 48 54.2
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 3.7e-10 69.3 204 42.2
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 4.8e-10 68.9 51 52.9
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 6.3e-10 68.6 165 39.4
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 6.3e-10 68.6 188 38.3
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 6.3e-10 68.6 193 33.2
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 6.3e-10 68.6 51 47.1
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 8.2e-10 68.2 197 38.6
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 8.2e-10 68.2 56 46.4
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 8.2e-10 68.2 196 43.9
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 8.2e-10 68.2 52 46.2
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 1.1e-09 67.8 184 46.2
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 1.1e-09 67.8 51 49.0
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 1.4e-09 67.4 189 32.8
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 1.4e-09 67.4 190 35.8
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 1.4e-09 67.4 46 54.3
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 1.8e-09 67.0 51 51.0
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.8e-09 67.0 188 36.7
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.8e-09 67.0 193 30.6
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 1.8e-09 67.0 52 46.2
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 2.4e-09 66.6 203 33.0
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 2.4e-09 66.6 46 54.3
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 3.1e-09 66.2 49 49.0
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 5.3e-09 65.5 192 44.3
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 5.3e-09 65.5 46 50.0
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 5.3e-09 65.5 200 40.5
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 6.9e-09 65.1 51 43.1
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 6.9e-09 65.1 51 47.1
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 6.9e-09 65.1 51 47.1
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 6.9e-09 65.1 51 47.1
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 6.9e-09 65.1 51 47.1
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 6.9e-09 65.1 48 52.1
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 9.1e-09 64.7 54 44.4
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.2e-08 64.3 46 52.2
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 1.2e-08 64.3 51 49.0
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.5e-08 63.9 184 45.1
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 1.5e-08 63.9 51 45.1
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 2.0e-08 63.5 51 45.1
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 2.0e-08 63.5 51 45.1
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 2.6e-08 63.2 47 51.1
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 2.6e-08 63.2 195 38.5
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 3.4e-08 62.8 199 30.2
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 3.4e-08 62.8 47 44.7
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 3.4e-08 62.8 49 44.9
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 4.5e-08 62.4 201 37.8
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.9e-08 62.0 51 43.1
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.0e-07 61.2 45 48.9
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 6.5e-07 58.5 51 39.2
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 6.5e-07 58.5 51 39.2
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 1.4e-06 57.4 184 37.0
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 1.4e-06 57.4 45 42.2
QL12p022365 Quercus lobata HOM05D005179 ORTHO05D006225 1.9e-06 57.0 46 50.0
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 3.2e-06 56.2 48 47.9
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 5.5e-06 55.5 42 45.2
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 7.2e-06 55.1 49 38.8


User provided reference genes

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