Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 2.2e-140 502.3 252 100.0
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 7.8e-130 467.2 253 93.7
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 2.5e-128 462.2 260 91.5
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 1.9e-120 436.0 302 78.5
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 2.0e-109 399.4 252 79.8
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 3.3e-104 382.1 252 75.0
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 2.7e-98 362.5 252 70.2
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 3.5e-98 362.1 252 71.0
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 4.3e-96 355.1 257 68.5
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.6e-95 353.2 252 70.2
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 6.2e-95 351.3 250 69.2
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 1.1e-94 350.5 252 69.4
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 1.8e-94 349.7 252 68.7
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 6.9e-94 347.8 252 69.4
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 1.5e-93 346.7 252 69.0
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 2.0e-93 346.3 252 69.0
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 5.8e-93 344.7 252 69.8
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 5.8e-93 344.7 252 67.5
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 2.2e-92 342.8 252 68.7
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 3.2e-91 339.0 252 68.3
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 1.2e-90 337.0 247 68.4
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 1.2e-90 337.0 252 67.1
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 1.6e-90 336.7 253 66.0
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 3.5e-90 335.5 252 67.9
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 4.6e-90 335.1 252 66.7
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 2.3e-89 332.8 252 67.5
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 2.3e-89 332.8 252 68.3
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 5.1e-89 331.6 252 63.5
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 5.1e-89 331.6 255 65.5
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 5.1e-89 331.6 252 67.1
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 6.7e-89 331.3 253 67.6
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 6.7e-89 331.3 253 67.6
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 6.7e-89 331.3 252 63.5
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 1.1e-88 330.5 252 63.1
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 9.6e-88 327.4 252 63.1
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 1.3e-87 327.0 253 64.0
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 1.3e-87 327.0 252 67.5
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 6.2e-87 324.7 252 64.7
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 6.2e-87 324.7 253 66.8
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 2.4e-86 322.8 247 66.4
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 3.1e-86 322.4 244 65.6
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 4.0e-86 322.0 247 66.0
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 6.9e-86 321.2 252 64.3
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 9.0e-86 320.9 252 66.3
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 2.0e-85 319.7 247 66.0
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 2.0e-85 319.7 252 65.1
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 2.6e-85 319.3 252 63.9
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 4.5e-85 318.5 250 64.8
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 1.7e-84 316.6 252 63.9
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 2.9e-84 315.8 247 64.8
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 3.8e-84 315.5 228 67.1
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 4.9e-84 315.1 245 64.5
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 1.1e-83 313.9 250 62.8
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 1.4e-83 313.5 254 63.4
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 1.9e-83 313.2 253 62.5
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 3.2e-83 312.4 248 64.5
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 7.1e-83 311.2 228 67.5
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 1.2e-82 310.5 253 61.3
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 1.0e-81 307.4 253 62.5
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 3.9e-81 305.4 252 62.7
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 5.1e-81 305.1 253 62.5
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 8.7e-81 304.3 228 65.8
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 1.5e-80 303.5 252 62.3
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 3.3e-80 302.4 252 59.9
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 7.4e-80 301.2 317 54.6
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 1.3e-79 300.4 252 61.5
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 1.3e-79 300.4 254 61.8
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 1.6e-79 300.1 253 61.7
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 1.6e-79 300.1 253 60.9
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 6.3e-79 298.1 254 61.8
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 8.2e-79 297.7 253 60.5
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 2.4e-78 296.2 259 60.6
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 3.1e-78 295.8 263 59.7
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 5.3e-78 295.0 257 59.9
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 6.9e-78 294.7 249 61.0
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 4.5e-77 292.0 253 59.3
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 5.9e-77 291.6 252 59.1
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 7.7e-77 291.2 252 59.1
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 5.0e-76 288.5 280 52.9
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 8.5e-76 287.7 260 56.9
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 2.5e-75 286.2 202 70.8
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 5.5e-75 285.0 235 60.4
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 7.2e-75 284.6 252 57.5
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 1.2e-74 283.9 303 50.2
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 3.6e-74 282.3 252 59.5
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 7.9e-74 281.2 252 57.5
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 1.1e-72 277.3 252 56.7
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 3.3e-72 275.8 241 58.1
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 6.9e-70 268.1 249 56.6
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 5.9e-69 265.0 189 68.3
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 1.3e-68 263.8 249 53.0
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 5.0e-68 261.9 247 52.2
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 2.5e-67 259.6 191 68.1
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 2.5e-67 259.6 201 63.7
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 2.5e-67 259.6 247 52.6
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 4.7e-66 255.4 189 65.6
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 9.7e-64 247.7 214 57.5
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 1.3e-63 247.3 251 51.4
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 8.2e-63 244.6 225 54.2
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 1.5e-56 223.8 209 54.1
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 9.4e-51 204.5 165 60.6
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 2.1e-50 203.4 154 62.3
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 8.6e-36 154.8 220 41.4
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 1.0e-33 147.9 122 59.8
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 2.0e-32 143.7 181 44.8
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 6.8e-25 118.6 234 35.0
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 8.9e-25 118.2 216 36.6
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 2.4e-22 110.2 180 33.3
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 6.0e-21 105.5 206 31.6
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 4.0e-17 92.8 197 32.0
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 8.9e-17 91.7 138 42.0
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 1.3e-15 87.8 127 39.4
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 4.9e-15 85.9 167 29.9
TPR.G24733 Trifolium pratense HOM05D007231 ORTHO05D009024 1.6e-13 80.9 65 61.5
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 5.1e-12 75.9 86 51.2
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 7.3e-11 72.0 67 55.2
TPR.G17639 Trifolium pratense HOM05D007231 ORTHO05D009024 1.2e-08 64.7 44 65.9
TPR.G23952 Trifolium pratense HOM05D007231 ORTHO05D009024 1.2e-08 64.7 44 65.9


User provided reference genes

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