Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1755.7 922 100.0
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1565.8 925 90.7
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1564.3 925 90.6
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1562.7 925 90.6
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 0.0e+00 1552.3 925 90.3
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1485.7 925 87.2
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 0.0e+00 1451.4 927 84.0
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 0.0e+00 1411.0 927 81.3
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 0.0e+00 1218.4 928 70.2
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 0.0e+00 1198.3 967 67.4
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 0.0e+00 1182.2 933 68.2
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 0.0e+00 1164.1 929 68.2
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 0.0e+00 1153.3 936 65.9
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 0.0e+00 1148.3 929 67.1
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 0.0e+00 1144.4 929 67.4
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 0.0e+00 1144.4 934 67.0
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 0.0e+00 1136.7 935 66.0
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 0.0e+00 1135.6 920 66.7
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 0.0e+00 1135.6 935 67.1
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 0.0e+00 1131.7 929 66.3
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 0.0e+00 1129.0 915 66.2
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 0.0e+00 1121.3 914 65.8
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 0.0e+00 1117.1 933 66.5
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 0.0e+00 1110.1 894 66.3
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 0.0e+00 1109.0 934 64.2
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 0.0e+00 1104.0 931 64.2
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 0.0e+00 1102.0 928 64.9
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 0.0e+00 1102.0 934 63.5
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1095.9 928 63.6
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 0.0e+00 1086.2 935 64.1
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 0.0e+00 1079.7 908 65.2
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1076.6 931 62.2
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 6.3e-312 1073.5 890 65.3
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 1.9e-311 1072.4 922 63.6
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 1.8e-309 1065.8 934 62.0
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 9.9e-308 1060.1 931 62.7
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 2.9e-307 1058.5 924 63.1
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 4.6e-305 1051.2 922 61.6
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 3.3e-303 1045.0 928 62.0
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 1.6e-302 1042.7 935 62.5
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 4.8e-302 1041.2 928 62.3
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 1.4e-301 1039.6 931 61.5
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 4.5e-300 1034.6 914 61.3
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 7.6e-300 1033.9 906 62.3
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 3.8e-299 1031.6 867 63.3
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 8.4e-299 1030.4 928 61.4
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 1.1e-298 1030.0 889 62.8
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 2.1e-297 1025.8 929 60.1
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 6.3e-294 1014.2 933 59.2
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 4.1e-293 1011.5 919 60.6
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 5.3e-293 1011.1 1000 58.3
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 4.5e-292 1008.1 932 59.9
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 4.5e-292 1008.1 890 60.9
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 1.3e-291 1006.5 934 60.0
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 1.1e-287 993.4 929 60.1
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 1.5e-287 993.0 918 59.0
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 2.5e-287 992.3 903 60.6
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 8.2e-286 987.3 931 59.2
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 5.9e-284 981.1 919 59.1
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 2.5e-282 975.7 832 63.1
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 2.5e-282 975.7 931 58.6
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 7.2e-282 974.2 930 58.3
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 1.8e-280 969.5 892 59.2
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 1.1e-279 966.8 930 58.0
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 2.6e-279 965.7 928 57.7
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 5.7e-279 964.5 868 59.9
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 5.7e-279 964.5 926 58.2
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 5.7e-279 964.5 937 57.3
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.7e-278 963.0 900 57.1
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 3.7e-278 961.8 926 57.9
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 1.5e-276 956.4 946 56.1
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 3.5e-276 955.3 927 57.9
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 3.5e-276 955.3 927 57.9
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 5.0e-275 951.4 930 56.8
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 1.2e-273 946.8 913 57.1
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 4.7e-273 944.9 804 62.9
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 8.0e-273 944.1 932 56.3
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 3.0e-272 942.2 910 56.2
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 2.0e-271 939.5 925 57.3
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 3.2e-266 922.2 933 56.5
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 3.6e-265 918.7 812 62.3
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 1.4e-264 916.8 938 56.1
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 2.3e-264 916.0 804 62.8
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 8.8e-264 914.1 933 53.6
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 7.0e-261 904.4 754 64.2
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 7.5e-255 884.4 932 53.8
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 8.3e-254 880.9 894 54.6
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 8.0e-249 864.4 858 55.7
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 2.0e-244 849.7 913 51.7
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 5.0e-243 845.1 874 54.2
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 2.1e-233 813.1 909 52.4
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 1.1e-232 810.8 806 54.6
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 4.9e-230 802.0 796 57.3
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 3.2e-229 799.3 656 63.9
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 2.1e-228 796.6 716 64.8
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 6.4e-222 775.0 569 70.3
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 9.0e-208 728.0 706 59.2
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 9.6e-202 708.0 550 65.8
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 1.9e-186 657.1 662 53.3
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 1.7e-182 644.0 476 69.1
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 5.5e-181 639.0 890 42.8
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.0e-179 634.8 900 41.4
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 9.7e-178 628.2 895 43.0
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 1.4e-176 624.4 803 49.1
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.8e-176 624.0 898 40.6
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 1.1e-168 598.2 482 69.1
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 1.2e-148 531.6 862 38.6
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 5.8e-122 443.0 418 59.8
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 9.5e-109 399.1 953 32.3
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 1.7e-105 388.3 308 64.0
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 4.1e-104 383.6 917 30.2
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 9.2e-104 382.5 348 56.9
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 1.1e-101 375.6 289 64.7
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.8e-99 368.2 409 52.6
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 1.1e-96 359.0 977 27.7
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.0e-90 338.2 436 49.1
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 2.4e-88 331.3 956 27.8
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 2.5e-85 321.2 219 80.8
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 1.2e-82 312.4 349 55.3
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 6.0e-79 300.1 271 61.3
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 1.8e-78 298.5 452 45.4
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.7e-73 282.0 256 59.4
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 6.9e-67 260.0 181 71.3
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 1.2e-66 259.2 400 46.5
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 1.8e-59 235.3 157 76.4
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 2.0e-53 215.3 174 66.1
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 9.1e-51 206.5 270 42.6
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 4.2e-48 197.6 316 39.2
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 6.5e-41 173.7 133 65.4
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 6.1e-39 167.2 129 70.5
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 2.3e-38 165.2 135 61.5
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.2e-36 158.7 178 44.9
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 4.7e-31 141.0 163 52.1
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 1.8e-30 139.0 99 74.7
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 1.6e-26 125.9 97 67.0
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 2.0e-26 125.6 167 47.9
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 3.0e-22 111.7 75 77.3
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.0e-17 96.7 197 28.9
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 1.3e-17 96.3 94 58.5
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.7e-17 95.9 70 71.4
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 3.3e-16 91.7 89 58.4
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 3.0e-14 85.1 179 36.9
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 6.8e-14 84.0 255 30.2
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.2e-13 83.2 48 81.2
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.7e-12 78.2 111 43.2
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 7.0e-11 73.9 63 57.1
arahy.Tifrunner.gnm1.ann1.8W9TWR Arachis hypogaea HOM05D005096 ORTHO05D006566 5.6e-08 64.3 60 53.3


User provided reference genes

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