Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 4.1e-114 414.8 223 100.0
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.6e-97 359.8 223 85.2
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 3.8e-96 355.1 223 84.3
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 6.5e-96 354.4 223 84.8
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 7.2e-95 350.9 223 84.3
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 4.7e-94 348.2 218 84.9
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 1.1e-71 273.9 232 69.0
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 5.4e-66 255.0 226 66.4
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 9.2e-66 254.2 226 64.6
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 7.8e-57 224.6 230 57.4
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 1.1e-55 220.7 230 57.0
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 3.3e-55 219.2 226 58.0
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 4.3e-55 218.8 234 56.4
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 7.3e-55 218.0 227 56.4
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.6e-54 216.9 228 57.9
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.6e-54 216.9 238 55.5
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 2.1e-54 216.5 227 55.5
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 1.4e-53 213.8 235 54.5
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 5.2e-53 211.8 226 55.8
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 1.2e-52 210.7 226 57.1
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 2.6e-52 209.5 232 55.2
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 3.4e-52 209.1 235 53.2
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.4e-52 209.1 233 54.5
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 7.5e-52 208.0 229 55.0
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 7.5e-52 208.0 233 54.1
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 9.8e-52 207.6 233 54.1
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 4.9e-51 205.3 235 53.6
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.1e-50 204.1 223 50.7
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 2.4e-50 203.0 226 53.1
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 5.4e-50 201.8 235 54.0
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 9.2e-50 201.1 236 53.0
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 1.6e-49 200.3 232 53.9
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 6.0e-49 198.4 233 51.1
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 6.0e-49 198.4 230 53.0
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 7.8e-49 198.0 229 51.5
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 1.0e-48 197.6 222 53.6
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 3.9e-48 195.7 229 54.6
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 1.1e-47 194.1 239 52.7
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.9e-47 193.4 234 51.3
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 2.5e-47 193.0 226 53.1
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 4.3e-47 192.2 226 53.1
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 9.5e-47 191.0 232 52.2
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.2e-46 190.7 227 51.1
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.2e-46 190.7 230 52.2
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 2.8e-46 189.5 235 51.5
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 4.7e-46 188.7 224 49.6
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 1.1e-45 187.6 232 50.4
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 1.4e-45 187.2 232 52.6
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 1.4e-45 187.2 228 52.2
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.4e-45 187.2 235 49.4
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 1.4e-45 187.2 224 51.8
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 4.0e-45 185.7 228 53.1
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 8.9e-45 184.5 229 51.5
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 1.2e-44 184.1 229 51.5
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.5e-44 183.7 228 51.3
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 4.4e-44 182.2 230 50.4
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 5.8e-44 181.8 239 49.4
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 5.8e-44 181.8 228 53.1
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 2.2e-43 179.9 226 51.3
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 2.2e-43 179.9 228 48.7
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 2.2e-43 179.9 228 48.7
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 2.2e-43 179.9 229 47.2
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 6.4e-43 178.3 233 53.2
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 8.4e-43 177.9 227 50.2
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 1.4e-42 177.2 233 47.2
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 3.2e-42 176.0 227 49.3
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 3.2e-42 176.0 227 49.3
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 3.2e-42 176.0 227 49.3
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 5.4e-42 175.3 231 46.3
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 9.2e-42 174.5 235 51.9
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.2e-41 174.1 232 45.7
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.6e-41 173.7 231 46.3
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 4.6e-41 172.2 229 49.3
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 7.8e-41 171.4 224 46.4
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 1.3e-40 170.6 235 48.5
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 2.3e-40 169.9 234 48.7
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 2.3e-40 169.9 225 48.9
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 3.0e-40 169.5 228 48.7
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 3.9e-40 169.1 227 49.8
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.1e-39 167.5 224 46.9
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 1.5e-39 167.2 252 45.6
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.9e-39 166.8 229 46.7
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 2.5e-39 166.4 239 46.0
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 5.6e-39 165.2 223 46.2
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 7.3e-39 164.9 227 47.1
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 2.8e-38 162.9 213 47.9
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 2.8e-38 162.9 230 45.7
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 6.2e-38 161.8 216 47.7
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 8.1e-38 161.4 230 45.2
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 1.1e-37 161.0 230 48.3
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 1.1e-37 161.0 231 48.5
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 1.4e-37 160.6 230 43.9
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 1.4e-37 160.6 230 45.2
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 1.8e-37 160.2 228 46.9
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.8e-37 160.2 230 47.4
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 2.4e-37 159.8 224 46.0
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 2.4e-37 159.8 240 46.7
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 2.4e-37 159.8 230 47.8
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 4.0e-37 159.1 232 49.1
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 5.2e-37 158.7 230 43.9
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 2.0e-36 156.8 215 48.8
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 2.6e-36 156.4 227 46.7
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 3.4e-36 156.0 188 52.7
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 4.4e-36 155.6 232 44.8
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 7.6e-36 154.8 221 45.2
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.3e-35 154.1 225 42.7
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 2.2e-35 153.3 230 43.9
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 3.8e-35 152.5 230 45.2
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 6.4e-35 151.8 239 45.2
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 8.4e-35 151.4 227 44.5
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 8.4e-35 151.4 225 44.0
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 1.1e-34 151.0 231 45.5
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 4.2e-34 149.1 227 46.7
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 4.2e-34 149.1 237 44.7
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 4.2e-34 149.1 235 46.0
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 4.2e-34 149.1 225 41.8
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 9.3e-34 147.9 228 45.2
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 3.5e-33 146.0 228 45.6
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 3.5e-33 146.0 231 43.7
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 7.8e-33 144.8 228 44.3
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 7.8e-33 144.8 228 44.7
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.3e-32 144.1 225 41.8
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 3.0e-32 142.9 193 48.7
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 3.9e-32 142.5 207 45.9
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 5.1e-32 142.1 227 42.7
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 8.7e-32 141.4 195 46.2
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 8.1e-30 134.8 228 42.5
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 8.1e-30 134.8 225 41.8
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 8.1e-30 134.8 225 41.8
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 1.1e-29 134.4 237 42.6
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 1.1e-29 134.4 189 46.6
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 1.8e-29 133.7 261 41.4
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 9.0e-29 131.3 223 40.8
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 2.0e-28 130.2 232 41.4
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 2.2e-27 126.7 219 41.1
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 2.2e-27 126.7 205 43.4
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 1.9e-26 123.6 89 71.9
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 4.2e-26 122.5 231 41.6
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 2.1e-25 120.2 221 43.0
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 1.3e-24 117.5 221 43.9
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 2.5e-23 113.2 229 40.2
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 3.3e-23 112.8 224 40.6
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 9.6e-23 111.3 223 39.0
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.3e-22 110.9 147 52.4
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 1.4e-21 107.5 279 31.5
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 2.4e-21 106.7 222 36.5
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.2e-20 104.4 148 47.3
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 1.3e-19 100.9 217 39.2
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 3.8e-19 99.4 187 39.0
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 6.4e-19 98.6 168 40.5
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.4e-18 97.4 229 32.8
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 4.2e-18 95.9 198 35.4
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 9.3e-18 94.7 235 37.0
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 3.9e-16 89.4 223 35.4
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 5.1e-16 89.0 87 56.3
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 1.1e-15 87.8 179 38.0
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 3.1e-13 79.7 212 35.4
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 3.1e-13 79.7 212 35.4
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 6.9e-13 78.6 98 48.0
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 3.4e-12 76.3 83 55.4
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 1.3e-11 74.3 52 69.2
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 1.7e-11 73.9 49 67.3
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 2.2e-11 73.6 53 71.7
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 5.5e-10 68.9 48 66.7
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 1.5e-07 60.8 106 43.4
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 1.5e-07 60.8 84 42.9
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 1.9e-07 60.5 131 38.9
TWI75G1401 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.6e-06 57.4 46 63.0


User provided reference genes

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