Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0290301 Rosa chinensis HOM05D000062 ORTHO05D021134 1.0e-64 250.0 129 100.0
RcHm_v2.0_Chr4g0416401 Rosa chinensis HOM05D000062 ORTHO05D008040 1.2e-57 226.5 120 95.8
FAN07G0848 Fragaria x ananassa HOM05D000062 ORTHO05D008040 1.1e-55 219.9 120 92.5
FvH4_4g15410 Fragaria vesca HOM05D000062 ORTHO05D008040 2.5e-55 218.8 120 92.5
FAN12G0430 Fragaria x ananassa HOM05D000062 ORTHO05D008040 2.5e-55 218.8 120 92.5
FAN17G2500 Fragaria x ananassa HOM05D000062 ORTHO05D008040 4.2e-55 218.0 120 91.7
FAN22G2250 Fragaria x ananassa HOM05D000062 ORTHO05D008040 3.0e-53 211.8 120 88.3
MD13G1191900 Malus domestica HOM05D000062 ORTHO05D008040 7.5e-44 180.6 121 76.0
MD16G1192600 Malus domestica HOM05D000062 ORTHO05D008040 6.3e-43 177.6 121 76.9
Prupe.1G012200 Prunus persica HOM05D000062 ORTHO05D008040 1.6e-41 172.9 120 75.0
Ca_24394_v3 Cicer arietinum L. HOM05D000062 ORTHO05D008040 4.5e-41 171.4 120 73.3
QL06p002678 Quercus lobata HOM05D000062 ORTHO05D008040 4.5e-41 171.4 120 73.3
Eucgr.H03518 Eucalyptus grandis HOM05D000062 ORTHO05D008040 1.7e-40 169.5 120 70.8
arahy.Tifrunner.gnm1.ann1.462RQZ Arachis hypogaea HOM05D000062 ORTHO05D008040 3.8e-40 168.3 120 72.5
Cfa015634 Carpinus fangiana HOM05D000062 ORTHO05D008040 3.8e-40 168.3 120 71.7
Glyma.01G238600 Glycine max HOM05D000062 ORTHO05D008040 3.8e-40 168.3 120 71.7
arahy.Tifrunner.gnm1.ann1.6XM150 Arachis hypogaea HOM05D000062 ORTHO05D008040 5.0e-40 167.9 120 71.7
Medtr5g006180 Medicago truncatula HOM05D000062 ORTHO05D008040 5.0e-40 167.9 120 70.8
Haze_00910 Corylus avellana HOM05D000062 ORTHO05D008040 6.5e-40 167.5 120 70.8
Potri.008G152000 Populus trichocarpa HOM05D000062 ORTHO05D008040 1.1e-39 166.8 121 69.4
Thecc.04G230400 Theobroma cacao HOM05D000062 ORTHO05D008040 1.1e-39 166.8 120 70.0
COL.COLO4_05311 Corchorus olitorius HOM05D000062 ORTHO05D008040 1.5e-39 166.4 120 71.7
VMungo1215G2717 Vigna mungo HOM05D000062 ORTHO05D008040 1.5e-39 166.4 120 71.7
Dinv44528 Davidia involucrata HOM05D000062 ORTHO05D008040 1.9e-39 166.0 120 70.0
Actinidia08496 Actinidia chinensis HOM05D000062 ORTHO05D008040 3.2e-39 165.2 120 68.3
Sabra08G0115800 Salix brachista HOM05D000062 ORTHO05D008040 4.2e-39 164.9 121 69.4
Duzib212G0736 Durio zibethinus HOM05D000062 ORTHO05D008040 7.2e-39 164.1 119 69.7
CANSAT78G0393 Cannabis sativa HOM05D000062 ORTHO05D008040 6.1e-38 161.0 120 67.5
Ciclev10004635m.g Citrus clementina HOM05D000062 ORTHO05D008040 6.1e-38 161.0 121 68.6
Lj1g0020820 Lotus japonicus HOM05D000062 ORTHO05D008040 6.1e-38 161.0 120 70.0
Lalb_Chr09g0319841 Lupinus albus HOM05D000062 ORTHO05D008040 8.0e-38 160.6 120 68.3
Gorai.006G238400 Gossypium raimondii HOM05D000062 ORTHO05D008040 1.8e-37 159.5 120 67.5
Medtr5g090110 Medicago truncatula HOM05D000062 ORTHO05D008040 2.3e-37 159.1 120 68.3
Cpa.g.sc58.117 Carica papaya HOM05D000062 ORTHO05D008040 3.0e-37 158.7 120 63.3
TAR365G0407 Trochodendron aralioides HOM05D000062 ORTHO05D008040 3.0e-37 158.7 120 65.8
THA.LOC104800965 Tarenaya hassleriana HOM05D000062 ORTHO05D008040 4.0e-37 158.3 120 66.7
Nitab4.5_0000043g0270 Nicotiana tabacum HOM05D000062 ORTHO05D008040 6.8e-37 157.5 120 66.7
Atru.ctg752_3.92 Acer truncatum HOM05D000062 ORTHO05D008040 8.8e-37 157.1 120 66.7
Rhsim02G0023300 Rhododendron simsii HOM05D000062 ORTHO05D008040 1.2e-36 156.8 120 66.7
Manes.15G028300 Manihot esculenta HOM05D000062 ORTHO05D008040 2.0e-36 156.0 120 64.2
Peaxi162Scf00092g00123 Petunia axillaris HOM05D000062 ORTHO05D008040 2.0e-36 156.0 120 65.8
Aqoxy5G00482 Aquilegia oxysepala HOM05D000062 ORTHO05D008040 2.6e-36 155.6 121 62.8
Potri.010G088600 Populus trichocarpa HOM05D000062 ORTHO05D008040 3.4e-36 155.2 121 66.1
Sabra10G0054400 Salix brachista HOM05D000062 ORTHO05D008040 5.7e-36 154.5 121 65.3
Cc03_g03680 Coffea canephora HOM05D000062 ORTHO05D008040 7.5e-36 154.1 120 64.2
CAN.G907.7 Capsicum annuum HOM05D000062 ORTHO05D008040 9.8e-36 153.7 120 65.0
Gohir.A09G215200 Gossypium hirsutum HOM05D000062 ORTHO05D008040 9.8e-36 153.7 120 65.0
SalBow2G3043 Salvia bowleyana HOM05D000062 ORTHO05D008040 9.8e-36 153.7 120 64.2
Hund12137 Selenicereus undatus HOM05D000062 ORTHO05D008040 1.3e-35 153.3 119 66.4
Gohir.D09G217700 Gossypium hirsutum HOM05D000062 ORTHO05D008040 1.7e-35 152.9 120 65.8
Nitab4.5_0000932g0020 Nicotiana tabacum HOM05D000062 ORTHO05D008040 2.2e-35 152.5 120 63.3
MSTRG.21850 Avicennia marina HOM05D000062 ORTHO05D008040 2.8e-35 152.1 120 64.2
DCAR_030628 Daucus carota HOM05D000062 ORTHO05D008040 2.8e-35 152.1 120 64.2
AUR62024018 Chenopodium quinoa HOM05D000062 ORTHO05D008040 3.7e-35 151.8 120 62.5
AUR62041322 Chenopodium quinoa HOM05D000062 ORTHO05D008040 3.7e-35 151.8 120 62.5
PGR004G2216 Punica granatum HOM05D000062 ORTHO05D008040 3.7e-35 151.8 120 63.3
Solyc09g075950.1 Solanum lycopersicum HOM05D000062 ORTHO05D008040 4.8e-35 151.4 120 65.0
Sopen09g030780 Solanum pennellii HOM05D000062 ORTHO05D008040 4.8e-35 151.4 120 65.0
TPR.G37867 Trifolium pratense HOM05D000062 ORTHO05D008040 4.8e-35 151.4 120 66.7
Sed0020943 Sechium edule HOM05D000062 ORTHO05D008040 6.3e-35 151.0 120 62.5
CiPaw.01G165100 Carya illinoinensis HOM05D000062 ORTHO05D008040 1.1e-34 150.2 129 60.5
Oeu031237.1 Olea europaea HOM05D000062 ORTHO05D008040 2.4e-34 149.1 121 62.0
PGSC0003DMG400030089 Solanum tuberosum HOM05D000062 ORTHO05D008040 3.1e-34 148.7 120 64.2
ECA236G3103 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.6e-33 146.4 121 62.8
PSO832G1811 Papaver somniferum HOM05D000062 ORTHO05D008040 1.6e-33 146.4 125 58.4
HanXRQChr16g0521681 Helianthus annuus HOM05D000062 ORTHO05D008040 2.7e-33 145.6 119 59.7
GSVIVG01017960001 Vitis vinifera HOM05D000062 ORTHO05D008040 4.5e-33 144.8 120 61.7
ClCG05G005200 Citrullus lanatus HOM05D000062 ORTHO05D008040 5.9e-33 144.4 120 62.5
Nn1g02279 Nelumbo nucifera HOM05D000062 ORTHO05D008040 5.9e-33 144.4 120 58.3
MBI04_g20821_MAGBIO Magnolia biondii HOM05D000062 ORTHO05D008040 7.7e-33 144.1 120 64.2
CsaV3_3G013380 Cucumis sativus L. HOM05D000062 ORTHO05D008040 1.0e-32 143.7 120 60.0
MELO3C006536.2 Cucumis melo HOM05D000062 ORTHO05D008040 1.3e-32 143.3 120 60.0
Ah.04g154520 Amaranthus hybridus HOM05D000062 ORTHO05D008040 2.3e-32 142.5 120 59.2
EL10Ac3g06426 Beta vulgaris HOM05D000062 ORTHO05D008040 2.3e-32 142.5 120 59.2
Lsat_1_v5_gn_9_81121 Lactuca sativa HOM05D000062 ORTHO05D008040 3.8e-32 141.7 121 61.2
Sc19g0004230 Simmondsia chinensis HOM05D000062 ORTHO05D008040 5.0e-32 141.4 120 64.2
Lj3P737T46 Lonicera japonica HOM05D000062 ORTHO05D008040 2.5e-31 139.0 121 62.0
Aa31LG5G4900 Aethionema arabicum HOM05D000062 ORTHO05D008040 4.2e-31 138.3 120 59.2
Zm00001eb400020 Zea mays HOM05D000062 ORTHO05D008040 9.5e-31 137.1 121 55.4
CSS0005594 Camellia sinensis var. sinensis HOM05D000062 ORTHO05D008040 4.7e-30 134.8 120 61.7
Os03g0218500 Oryza sativa ssp. japonica HOM05D000062 ORTHO05D008040 6.1e-30 134.4 120 54.2
Medtr4g115780 Medicago truncatula HOM05D000062 ORTHO05D008040 2.0e-28 129.4 122 58.2
Phvul.002G046600 Phaseolus vulgaris HOM05D000062 ORTHO05D008040 2.0e-28 129.4 120 61.7
TPR.G7997 Trifolium pratense HOM05D000062 ORTHO05D008040 2.6e-28 129.0 122 56.6
SGA_v2.0_scaffold39G15248 Striga asiatica HOM05D000062 ORTHO05D008040 3.4e-28 128.6 120 55.8
HPP92_020372 Vanilla planifolia HOM05D000062 ORTHO05D008040 4.4e-28 128.3 126 52.4
Gohir.D09G217750 Gossypium hirsutum HOM05D000062 ORTHO05D008040 7.5e-28 127.5 127 57.5
Gorai.006G238600 Gossypium raimondii HOM05D000062 ORTHO05D008040 7.5e-28 127.5 127 57.5
CDE06G1449 Ceratophyllum demersum HOM05D000062 ORTHO05D008040 1.7e-27 126.3 122 52.5
AL103U10020 Arabidopsis lyrata HOM05D000062 ORTHO05D008040 1.4e-26 123.2 120 56.7
AL4G27490 Arabidopsis lyrata HOM05D000062 ORTHO05D008040 1.4e-26 123.2 120 56.7
Ca_21652_v3 Cicer arietinum L. HOM05D000062 ORTHO05D008040 1.4e-26 123.2 122 54.1
BcaB02g10452 Brassica carinata HOM05D000062 ORTHO05D008040 9.2e-26 120.6 120 54.2
AT2G32120 Arabidopsis thaliana HOM05D000062 ORTHO05D008040 1.6e-25 119.8 120 55.0
C04p17510 Brassica napus HOM05D000062 ORTHO05D008040 1.6e-25 119.8 120 54.2
BolC4t23298H Brassica oleracea HOM05D000062 ORTHO05D008040 1.6e-25 119.8 120 54.2
Carub.0004s1346 Capsella rubella HOM05D000062 ORTHO05D008040 2.0e-25 119.4 120 54.2
BraA05t20277Z Brassica rapa HOM05D000062 ORTHO05D008040 5.9e-25 117.9 120 54.2
Sp4g14520 Schrenkiella parvula HOM05D000062 ORTHO05D008040 5.9e-25 117.9 120 53.3
Migut.G00332 Erythranthe guttata HOM05D000062 ORTHO05D008040 1.0e-24 117.1 101 54.5
SEGI_38754 Sequoiadendron giganteum HOM05D000062 ORTHO05D008040 1.0e-24 117.1 121 50.4
A05p13390 Brassica napus HOM05D000062 ORTHO05D008040 1.3e-24 116.7 120 53.3
CARHR125910 Cardamine hirsuta HOM05D000062 ORTHO05D008040 1.7e-24 116.3 120 54.2
Thhalv10016453m.g Eutrema salsugineum HOM05D000062 ORTHO05D008040 5.0e-24 114.8 120 52.5
Psat4g210520 Pisum sativum HOM05D000062 ORTHO05D008040 5.0e-24 114.8 117 53.0
TPR.G8004 Trifolium pratense HOM05D000062 ORTHO05D021134 1.2e-22 110.2 113 55.8
TPR.G25227 Trifolium pratense HOM05D000062 ORTHO05D008040 3.6e-22 108.6 120 50.8
TPR.G9010 Trifolium pratense HOM05D000062 ORTHO05D008040 8.0e-22 107.5 122 50.8
TPR.G19719 Trifolium pratense HOM05D000062 ORTHO05D411668 2.3e-21 105.9 126 49.2
Gohir.A09G215250 Gossypium hirsutum HOM05D000062 ORTHO05D008040 3.0e-21 105.5 120 52.5
TPR.G38401 Trifolium pratense HOM05D000062 ORTHO05D008040 2.2e-19 99.4 122 48.4
Medtr4g103780 Medicago truncatula HOM05D000062 ORTHO05D008040 1.1e-18 97.1 118 48.3
TPR.G9002 Trifolium pratense HOM05D000062 ORTHO05D008040 1.1e-18 97.1 122 45.9
TPR.G34127 Trifolium pratense HOM05D000062 ORTHO05D008040 7.0e-18 94.4 122 45.1
TPR.G13709 Trifolium pratense HOM05D000062 ORTHO05D008040 4.6e-17 91.7 123 44.7
ATR0332G079 Amborella trichopoda HOM05D000062 ORTHO05D008040 7.8e-17 90.9 120 43.3
Medtr4g107920 Medicago truncatula HOM05D000062 ORTHO05D008040 1.3e-16 90.1 122 49.2
SMO172G0025 Selaginella moellendorffii HOM05D000062 ORTHO05D008040 3.3e-15 85.5 125 40.0
Gorai.006G238500 Gossypium raimondii HOM05D000062 ORTHO05D021134 1.2e-12 77.0 67 59.7
Actinidia27170 Actinidia chinensis HOM05D000062 ORTHO05D008040 7.5e-12 74.3 59 59.3
Psat2g051360 Pisum sativum HOM05D000062 ORTHO05D008040 7.5e-12 74.3 52 71.2
Actinidia36965 Actinidia chinensis HOM05D000062 ORTHO05D021134 9.8e-12 73.9 58 60.3
TPR.G34105 Trifolium pratense HOM05D000062 ORTHO05D037791 4.9e-11 71.6 65 55.4
Medtr4g115870 Medicago truncatula HOM05D000062 ORTHO05D265094 9.2e-10 67.4 68 55.9
TPR.G3953 Trifolium pratense HOM05D000062 ORTHO05D037791 1.7e-08 63.2 61 54.1
Psat4g035840 Pisum sativum HOM05D000062 ORTHO05D021134 3.9e-08 62.0 69 52.2
QL08p059913 Quercus lobata HOM05D000062 ORTHO05D000043 2.1e-06 56.2 125 35.2
TPR.G17510 Trifolium pratense HOM05D000062 ORTHO05D021134 2.1e-06 56.2 52 57.7
HanXRQChr15g0463221 Helianthus annuus HOM05D000062 ORTHO05D000043 3.6e-06 55.5 124 32.3
Zm00001eb012510 Zea mays HOM05D000062 ORTHO05D000043 4.7e-06 55.1 128 31.2
CBR_g31646 Chara braunii HOM05D000062 ORTHO05D000043 6.2e-06 54.7 125 34.4
Prupe.6G079700 Prunus persica HOM05D000062 ORTHO05D000043 8.1e-06 54.3 133 33.1


User provided reference genes

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