Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 0.0e+00 1109.7 565 100.0
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 8.2e-305 1049.7 565 94.7
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.4e-304 1048.9 565 94.9
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 8.5e-302 1039.6 559 94.8
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 5.5e-301 1036.9 559 95.0
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 5.2e-299 1030.4 549 95.8
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 5.6e-277 957.2 565 84.2
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 6.2e-276 953.7 565 84.4
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 5.4e-264 914.1 565 81.9
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.1e-263 912.1 565 81.8
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 1.3e-257 892.9 567 79.5
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 4.9e-257 891.0 565 80.0
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 3.2e-256 888.3 569 79.6
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 4.3e-253 877.9 572 78.1
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 1.7e-249 865.9 570 76.5
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 2.8e-244 848.6 545 78.3
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 1.7e-241 839.3 570 75.4
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 3.2e-240 835.1 570 75.3
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 1.5e-237 826.2 570 73.3
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 3.3e-237 825.1 570 74.7
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 1.6e-236 822.8 570 74.0
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 1.1e-235 820.1 570 74.0
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 2.2e-233 812.4 573 72.8
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 6.4e-233 810.8 570 73.3
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 6.4e-233 810.8 596 70.8
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 8.4e-233 810.4 571 72.3
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 2.4e-232 808.9 565 73.5
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 2.7e-231 805.4 565 73.5
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.6e-228 796.2 563 72.8
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 4.8e-228 794.7 570 71.8
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 8.1e-228 793.9 572 71.5
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 3.1e-227 792.0 566 72.1
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 4.0e-227 791.6 570 71.1
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 1.5e-226 789.6 566 72.1
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 5.8e-226 787.7 570 71.2
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.0e-225 786.9 566 72.1
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.4e-224 783.1 570 70.2
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 1.9e-224 782.7 572 70.8
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 4.2e-224 781.6 570 70.0
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 7.1e-224 780.8 570 69.8
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 9.3e-224 780.4 566 71.6
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 1.2e-223 780.0 566 71.7
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 5.1e-222 774.6 572 70.8
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 5.1e-222 774.6 571 70.4
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 5.7e-221 771.2 501 78.0
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 7.4e-221 770.8 571 70.2
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 1.3e-220 770.0 556 70.5
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 1.6e-220 769.6 573 70.5
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 1.6e-220 769.6 573 69.6
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 6.3e-220 767.7 570 70.0
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 3.1e-219 765.4 501 76.0
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 2.0e-218 762.7 428 88.1
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 2.6e-218 762.3 568 68.8
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 7.6e-218 760.8 505 75.0
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 1.1e-216 756.9 570 68.8
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 1.1e-216 756.9 570 67.4
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 1.4e-216 756.5 574 69.0
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 7.2e-216 754.2 574 67.9
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 9.3e-216 753.8 568 68.8
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 2.1e-215 752.7 568 69.2
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 1.5e-213 746.5 571 68.5
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 1.9e-213 746.1 571 69.0
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 2.5e-213 745.7 572 67.5
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 2.2e-212 742.7 569 68.2
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 4.8e-212 741.5 556 68.5
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 4.8e-212 741.5 570 67.9
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 8.2e-212 740.7 571 67.4
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.2e-210 736.9 504 73.4
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.5e-210 736.5 504 73.4
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.6e-210 735.7 566 69.1
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 1.3e-209 733.4 572 66.3
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 6.5e-209 731.1 579 66.7
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 4.2e-208 728.4 567 66.7
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 5.5e-208 728.0 571 67.6
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 1.6e-207 726.5 570 66.8
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 2.1e-207 726.1 575 67.0
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.1e-207 726.1 504 72.6
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 1.0e-206 723.8 571 66.5
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 8.8e-206 720.7 501 71.7
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 1.5e-205 719.9 507 70.6
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 9.7e-205 717.2 502 71.9
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.2e-204 716.1 573 66.7
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 2.8e-204 715.7 569 66.8
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 2.4e-203 712.6 579 64.4
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 1.2e-202 710.3 569 65.6
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 7.7e-202 707.6 572 65.4
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 1.3e-201 706.8 575 66.3
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 1.7e-201 706.4 569 66.4
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.2e-201 706.1 574 66.0
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 1.4e-200 703.4 581 64.5
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 1.4e-200 703.4 578 64.2
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 3.2e-200 702.2 559 65.5
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 1.2e-199 700.3 569 65.4
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 1.4e-198 696.8 585 64.3
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 3.0e-198 695.7 580 64.7
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 3.0e-198 695.7 559 64.9
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 1.1e-197 693.7 571 65.7
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 1.3e-196 690.3 574 65.2
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.7e-196 689.9 574 65.7
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 2.2e-196 689.5 573 64.4
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 2.8e-196 689.1 585 63.6
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 1.4e-195 686.8 508 69.7
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 1.6e-194 683.3 566 65.4
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.0e-193 680.6 569 63.4
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 1.3e-193 680.2 572 64.9
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 1.1e-192 677.2 574 60.8
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 4.7e-191 671.8 513 66.1
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 6.7e-190 667.9 504 66.5
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 1.3e-188 663.7 559 62.1
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 1.1e-187 660.6 423 77.1
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.8e-187 659.8 557 63.4
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 6.8e-174 614.8 515 62.1
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 3.4e-173 612.5 582 57.2
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 8.3e-172 607.8 509 61.5
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 1.1e-171 607.4 501 66.5
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 1.1e-171 607.4 562 56.2
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 9.2e-171 604.4 351 82.9
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 5.2e-166 588.6 523 59.5
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 2.2e-164 583.2 444 65.3
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.1e-160 570.9 384 71.6
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 4.3e-144 515.8 513 51.5
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 9.5e-144 514.6 534 51.5
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 5.8e-141 505.4 550 53.5
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 1.7e-137 493.8 480 56.2
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 1.7e-129 467.2 526 48.9
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 4.9e-124 449.1 258 81.4
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 2.4e-123 446.8 534 44.8
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 5.3e-118 429.1 444 50.5
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 4.5e-117 426.0 467 55.0
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 1.9e-115 420.6 497 50.1
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.3e-108 397.9 516 47.5
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 7.7e-93 345.5 292 64.4
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 7.2e-91 339.0 471 41.2
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 2.7e-90 337.0 308 54.2
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 2.4e-86 323.9 382 51.3
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 2.7e-74 283.9 453 37.7
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 8.2e-71 272.3 328 42.7
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 1.2e-69 268.5 243 60.5
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 8.0e-66 255.8 571 35.4
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 5.2e-41 173.3 167 59.3
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 1.2e-40 172.2 239 45.6
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 1.7e-31 141.7 608 22.4
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 1.1e-17 95.9 92 62.0
RcHm_v2.0_Chr7g0205881 Rosa chinensis HOM05D005019 ORTHO05D347162 1.1e-14 85.9 78 61.5
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 3.3e-11 74.3 54 72.2
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 8.1e-10 69.7 63 55.6


User provided reference genes

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