Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0288121 Rosa chinensis HOM05D008367 ORTHO05D010529 1.9e-99 365.9 191 100.0
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.2e-84 315.8 191 88.0
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.1e-81 304.7 186 87.1
FvH4_2g21490 Fragaria vesca HOM05D008367 ORTHO05D010529 5.2e-78 294.7 191 83.8
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-72 276.9 184 82.1
MD05G1197200 Malus domestica HOM05D008367 ORTHO05D010529 7.2e-43 177.9 206 56.3
Prupe.8G223700 Prunus persica HOM05D008367 ORTHO05D010529 3.3e-32 142.5 202 50.5
Ciclev10022407m.g Citrus clementina HOM05D008367 ORTHO05D010529 7.7e-29 131.3 205 46.8
QL09p038772 Quercus lobata HOM05D008367 ORTHO05D010529 5.0e-28 128.6 195 48.2
Duzib138G1787 Durio zibethinus HOM05D008367 ORTHO05D010529 1.6e-26 123.6 194 44.8
Potri.002G038400 Populus trichocarpa HOM05D008367 ORTHO05D010529 7.9e-26 121.3 197 45.7
Haze_24631 Corylus avellana HOM05D008367 ORTHO05D010529 1.0e-25 120.9 191 44.5
Duzib133G0413 Durio zibethinus HOM05D008367 ORTHO05D010529 3.9e-25 119.0 189 45.0
Medtr7g096950 Medicago truncatula HOM05D008367 ORTHO05D010529 3.9e-25 119.0 203 45.8
Thecc.01G258200 Theobroma cacao HOM05D008367 ORTHO05D010529 8.8e-25 117.9 194 44.8
Manes.13G034100 Manihot esculenta HOM05D008367 ORTHO05D010529 1.1e-24 117.5 189 43.4
Cfa002424 Carpinus fangiana HOM05D008367 ORTHO05D010529 1.5e-24 117.1 193 43.5
Sabra02G0030800 Salix brachista HOM05D008367 ORTHO05D010529 2.0e-24 116.7 198 44.9
COL.COLO4_05894 Corchorus olitorius HOM05D008367 ORTHO05D010529 2.2e-23 113.2 201 43.3
Potri.005G224200 Populus trichocarpa HOM05D008367 ORTHO05D010529 2.8e-23 112.8 197 43.7
Sabra05G0173000 Salix brachista HOM05D008367 ORTHO05D010529 4.8e-23 112.1 200 43.5
Glyma.03G163200 Glycine max HOM05D008367 ORTHO05D010529 2.4e-22 109.8 189 41.3
Glyma.19G164700 Glycine max HOM05D008367 ORTHO05D010529 4.1e-22 109.0 186 41.9
Cc01_g18350 Coffea canephora HOM05D008367 ORTHO05D010529 1.2e-21 107.5 203 43.3
Phvul.001G161100 Phaseolus vulgaris HOM05D008367 ORTHO05D010529 1.6e-21 107.1 189 43.4
Psat3g056920 Pisum sativum HOM05D008367 ORTHO05D010529 2.0e-21 106.7 195 43.1
Gohir.D07G155080 Gossypium hirsutum HOM05D008367 ORTHO05D010529 3.5e-21 105.9 195 44.1
Gorai.001G177400 Gossypium raimondii HOM05D008367 ORTHO05D010529 3.5e-21 105.9 195 44.1
Gohir.A07G148700 Gossypium hirsutum HOM05D008367 ORTHO05D010529 7.7e-21 104.8 195 43.6
VMungo1383G3617 Vigna mungo HOM05D008367 ORTHO05D010529 1.3e-20 104.0 189 43.9
CiPaw.03G264200 Carya illinoinensis HOM05D008367 ORTHO05D010529 3.8e-20 102.4 200 41.5
Oeu025845.1 Olea europaea HOM05D008367 ORTHO05D010529 6.5e-20 101.7 190 40.5
Cpa.g.sc165.10 Carica papaya HOM05D008367 ORTHO05D010529 8.5e-20 101.3 197 42.1
Ca_08676_v3 Cicer arietinum L. HOM05D008367 ORTHO05D010529 2.5e-19 99.8 199 40.2
Lj1g0003464 Lotus japonicus HOM05D008367 ORTHO05D010529 4.2e-19 99.0 196 41.8
Hma1.2p1_0576F.1_g182070 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 2.1e-18 96.7 198 42.4
Ca_08702_v3 Cicer arietinum L. HOM05D008367 ORTHO05D010529 2.7e-18 96.3 199 39.7
Actinidia09550 Actinidia chinensis HOM05D008367 ORTHO05D010529 3.6e-18 95.9 188 41.0
Rhsim01G0263900 Rhododendron simsii HOM05D008367 ORTHO05D010529 4.7e-18 95.5 202 41.6
Atru.chr5.1688 Acer truncatum HOM05D008367 ORTHO05D010529 6.1e-18 95.1 193 40.4
Actinidia25788 Actinidia chinensis HOM05D008367 ORTHO05D010529 1.0e-17 94.4 194 44.3
Ca_08710_v3 Cicer arietinum L. HOM05D008367 ORTHO05D010529 1.8e-17 93.6 199 39.2
Migut.N02203 Erythranthe guttata HOM05D008367 ORTHO05D010529 1.2e-16 90.9 204 37.7
Nitab4.5_0000470g0140 Nicotiana tabacum HOM05D008367 ORTHO05D010529 2.6e-16 89.7 195 36.9
CANSAT01G1417 Cannabis sativa HOM05D008367 ORTHO05D010529 7.5e-16 88.2 204 37.7
Lalb_Chr01g0012251 Lupinus albus HOM05D008367 ORTHO05D010529 7.5e-16 88.2 189 38.1
Hma1.2p1_0273F.1_g109700 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 2.2e-15 86.7 198 34.3
Rhsim13G0035000 Rhododendron simsii HOM05D008367 ORTHO05D010529 6.3e-15 85.1 212 37.3
Eucgr.B01554 Eucalyptus grandis HOM05D008367 ORTHO05D010529 1.1e-14 84.3 187 38.5
CAN.G896.7 Capsicum annuum HOM05D008367 ORTHO05D010529 4.1e-14 82.4 205 35.1
Actinidia27694 Actinidia chinensis HOM05D008367 ORTHO05D010529 7.0e-14 81.6 184 41.8
THA.LOC104814518 Tarenaya hassleriana HOM05D013395 ORTHO05D015261 2.7e-13 79.7 185 37.3
PGSC0003DMG400010298 Solanum tuberosum HOM05D008367 ORTHO05D010529 3.2e-11 72.8 195 32.8
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 8.0e-10 68.2 208 30.8
TAR636G0759 Trochodendron aralioides HOM05D007526 ORTHO05D009350 8.0e-10 68.2 187 33.7
Sopen09g028370 Solanum pennellii HOM05D008367 ORTHO05D010529 1.8e-09 67.0 183 33.9
SGA_v2.0_scaffold80G25773 Striga asiatica HOM05D008367 ORTHO05D010529 2.3e-09 66.6 203 31.0
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 3.0e-09 66.2 193 31.1
Gohir.D11G136600 Gossypium hirsutum HOM05D008367 ORTHO05D010529 3.0e-09 66.2 196 36.2
DCAR_007739 Daucus carota HOM05D008367 ORTHO05D010529 4.0e-09 65.9 103 42.7
Nn3g19655 Nelumbo nucifera HOM05D007526 ORTHO05D009350 6.8e-09 65.1 227 32.6
TAR365G0977 Trochodendron aralioides HOM05D007526 ORTHO05D009350 6.8e-09 65.1 187 32.1
Dinv22407 Davidia involucrata HOM05D008367 ORTHO05D010529 2.0e-08 63.5 158 38.6
Gorai.007G146300 Gossypium raimondii HOM05D008367 ORTHO05D010529 2.0e-08 63.5 194 36.1
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 2.6e-08 63.2 194 31.4
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 2.6e-08 63.2 186 29.0
MBI07_g16245_MAGBIO Magnolia biondii HOM05D007526 ORTHO05D009350 5.7e-08 62.0 187 35.3
Rhsim13G0034900 Rhododendron simsii HOM05D009321 ORTHO05D010529 5.7e-08 62.0 50 66.0
Lsat_1_v5_gn_8_93101 Lactuca sativa HOM05D008367 ORTHO05D010529 2.2e-07 60.1 42 69.0
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 2.8e-07 59.7 189 28.6
ECA236G2746 Erigeron canadensis HOM05D008367 ORTHO05D010529 2.8e-07 59.7 44 63.6
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 3.7e-07 59.3 185 27.6
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 3.7e-07 59.3 189 30.7
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 4.8e-07 58.9 189 30.2
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 4.8e-07 58.9 195 29.7
Aqoxy5G00249 Aquilegia oxysepala HOM05D007526 ORTHO05D009350 6.3e-07 58.5 190 28.9
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 6.3e-07 58.5 189 29.1
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 8.3e-07 58.2 183 31.7
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 1.4e-06 57.4 202 30.7
Aa31LG8G17450 Aethionema arabicum HOM05D013395 ORTHO05D015261 2.4e-06 56.6 202 33.7
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 2.4e-06 56.6 201 27.9
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 3.1e-06 56.2 190 27.9
Nn1g02762 Nelumbo nucifera HOM05D007526 ORTHO05D009350 4.1e-06 55.8 214 31.8


User provided reference genes

Program Settings