Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0288011 Rosa chinensis HOM05D006033 ORTHO05D007112 1.2e-55 219.5 103 100.0
Eucgr.K02726 Eucalyptus grandis HOM05D006033 ORTHO05D007112 2.4e-08 62.4 33 87.9
Actinidia08871 Actinidia chinensis HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
Actinidia36806 Actinidia chinensis HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
CSS0003528 Camellia sinensis var. sinensis HOM05D006033 ORTHO05D007112 3.1e-08 62.0 36 80.6
CANSAT80G2253 Cannabis sativa HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
CAN.G352.14 Capsicum annuum HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
ClCG03G003760 Citrullus lanatus HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
Ciclev10031478m.g Citrus clementina HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
Cc03_g15140 Coffea canephora HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
COL.COLO4_28129 Corchorus olitorius HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
CsaV3_1G009650 Cucumis sativus L. HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
Dinv11172 Davidia involucrata HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
Duzib205G1080 Durio zibethinus HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
Gohir.A12G189600 Gossypium hirsutum HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
Manes.06G119600 Manihot esculenta HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
Nitab4.5_0003282g0110 Nicotiana tabacum HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
Nitab4.5_0004750g0050 Nicotiana tabacum HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
Peaxi162Scf00089g00624 Petunia axillaris HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
Potri.015G096300 Populus trichocarpa HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
PGR044G2394 Punica granatum HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
QL10p002899 Quercus lobata HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
Sabra15G0117100 Salix brachista HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
Hund02441 Selenicereus undatus HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
Sc10g0010470 Simmondsia chinensis HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
Solyc03g111340.4 Solanum lycopersicum HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
Sopen03g030470 Solanum pennellii HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
PGSC0003DMG401015240 Solanum tuberosum HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
Thecc.03G129200 Theobroma cacao HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
vmacro16716 Vaccinium macrocarpon HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
GSVIVG01008543001 Vitis vinifera HOM05D006033 ORTHO05D007112 3.1e-08 62.0 33 84.8
arahy.Tifrunner.gnm1.ann1.YV4Q3G Arachis hypogaea HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
arahy.Tifrunner.gnm1.ann1.Z456W4 Arachis hypogaea HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
Cpa.g.sc13.116 Carica papaya HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
CiPaw.12G043200 Carya illinoinensis HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
MELO3C002361.2 Cucumis melo HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
Glyma.05G048200 Glycine max HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
Glyma.17G130200 Glycine max HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
Gohir.D12G192000 Gossypium hirsutum HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
Gorai.008G206300 Gossypium raimondii HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
Lj1g0005507 Lotus japonicus HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
Lalb_Chr08g0237161 Lupinus albus HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
Phvul.003G211200 Phaseolus vulgaris HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
THA.LOC104811587 Tarenaya hassleriana HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
TPR.G14208 Trifolium pratense HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
TWI23G0550 Tripterygium wilfordii HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
TWI39G0081 Tripterygium wilfordii HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
unitig_46.g18225 Utricularia gibba HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
VMungo1215G0762 Vigna mungo HOM05D006033 ORTHO05D007112 6.9e-08 60.8 33 81.8
Atru.chr6.1793 Acer truncatum HOM05D006033 ORTHO05D007112 9.0e-08 60.5 32 84.4
MSTRG.1619 Avicennia marina HOM05D006033 ORTHO05D007112 9.0e-08 60.5 32 84.4
Cfa018795 Carpinus fangiana HOM05D006033 ORTHO05D007112 9.0e-08 60.5 32 84.4
Haze_07138 Corylus avellana HOM05D006033 ORTHO05D007112 9.0e-08 60.5 32 84.4
DCAR_021619 Daucus carota HOM05D006033 ORTHO05D007112 9.0e-08 60.5 32 84.4
Migut.E01431 Erythranthe guttata HOM05D006033 ORTHO05D007112 9.0e-08 60.5 32 84.4
FvH4_5g08320 Fragaria vesca HOM05D006033 ORTHO05D007112 9.0e-08 60.5 32 84.4
FAN04G2747 Fragaria x ananassa HOM05D006033 ORTHO05D007112 9.0e-08 60.5 32 84.4
FAN08G2192 Fragaria x ananassa HOM05D006033 ORTHO05D007112 9.0e-08 60.5 32 84.4
FAN13G1806 Fragaria x ananassa HOM05D006033 ORTHO05D007112 9.0e-08 60.5 32 84.4
FAN18G2263 Fragaria x ananassa HOM05D006033 ORTHO05D007112 9.0e-08 60.5 32 84.4
MD06G1141900 Malus domestica HOM05D006033 ORTHO05D007112 9.0e-08 60.5 32 84.4
MD14G1157100 Malus domestica HOM05D006033 ORTHO05D007112 9.0e-08 60.5 32 84.4
Prupe.5G151100 Prunus persica HOM05D006033 ORTHO05D007112 9.0e-08 60.5 32 84.4
RcHm_v2.0_Chr7g0190201 Rosa chinensis HOM05D006033 ORTHO05D007112 9.0e-08 60.5 32 84.4
Sed0010085 Sechium edule HOM05D006033 ORTHO05D007112 9.0e-08 60.5 32 84.4
SGA_v2.0_scaffold121G33024 Striga asiatica HOM05D006033 ORTHO05D007112 9.0e-08 60.5 32 84.4
CDE02G1207 Ceratophyllum demersum HOM05D006033 ORTHO05D007112 1.2e-07 60.1 33 81.8
ATR0561G152 Amborella trichopoda HOM05D006033 ORTHO05D007112 1.5e-07 59.7 33 81.8
Aqoxy5G03378 Aquilegia oxysepala HOM05D006033 ORTHO05D007112 1.5e-07 59.7 33 81.8
EL10Ac5g11413 Beta vulgaris HOM05D006033 ORTHO05D007112 1.5e-07 59.7 33 81.8
AUR62029613 Chenopodium quinoa HOM05D006033 ORTHO05D007112 1.5e-07 59.7 33 81.8
AUR62034824 Chenopodium quinoa HOM05D006033 ORTHO05D007112 1.5e-07 59.7 33 81.8
HanXRQChr05g0155041 Helianthus annuus HOM05D006033 ORTHO05D007112 1.5e-07 59.7 33 81.8
Lsat_1_v5_gn_5_13720 Lactuca sativa HOM05D006033 ORTHO05D007112 1.5e-07 59.7 33 81.8
Lj5A96T53 Lonicera japonica HOM05D006033 ORTHO05D007112 1.5e-07 59.7 33 81.8
Nn4g22317 Nelumbo nucifera HOM05D006033 ORTHO05D007112 1.5e-07 59.7 33 81.8
TAR374G1541 Trochodendron aralioides HOM05D006033 ORTHO05D007112 1.5e-07 59.7 33 81.8
HPP92_007005 Vanilla planifolia HOM05D006033 ORTHO05D007112 1.5e-07 59.7 33 81.8
Zm00001eb241690 Zea mays HOM05D006033 ORTHO05D007112 1.5e-07 59.7 33 81.8
Ca_16046_v3 Cicer arietinum L. HOM05D006033 ORTHO05D007112 2.0e-07 59.3 32 81.2
Medtr2g045230 Medicago truncatula HOM05D006033 ORTHO05D007112 2.0e-07 59.3 32 81.2
Medtr3g099240 Medicago truncatula HOM05D006033 ORTHO05D007112 2.0e-07 59.3 32 81.2
Psat5g051280 Pisum sativum HOM05D006033 ORTHO05D007112 2.0e-07 59.3 32 81.2
SalBow8G5593 Salvia bowleyana HOM05D006033 ORTHO05D007112 2.0e-07 59.3 32 81.2
Aa31LG1G19340 Aethionema arabicum HOM05D006033 ORTHO05D007112 2.6e-07 58.9 33 78.8
AL1G15150 Arabidopsis lyrata HOM05D006033 ORTHO05D007112 3.4e-07 58.5 33 78.8
AT1G05350 Arabidopsis thaliana HOM05D006033 ORTHO05D007112 3.4e-07 58.5 33 78.8
BcaC07g42135 Brassica carinata HOM05D006033 ORTHO05D007112 3.4e-07 58.5 33 78.8
A09p67480 Brassica napus HOM05D006033 ORTHO05D007112 3.4e-07 58.5 33 78.8
A10p04060 Brassica napus HOM05D006033 ORTHO05D007112 3.4e-07 58.5 33 78.8
C05p03680 Brassica napus HOM05D006033 ORTHO05D007112 3.4e-07 58.5 33 78.8
C08p51760 Brassica napus HOM05D006033 ORTHO05D007112 3.4e-07 58.5 33 78.8
BolC5t29145H Brassica oleracea HOM05D006033 ORTHO05D007112 3.4e-07 58.5 33 78.8
BraA09t42076Z Brassica rapa HOM05D006033 ORTHO05D007112 3.4e-07 58.5 33 78.8
BraA10t42677Z Brassica rapa HOM05D006033 ORTHO05D007112 3.4e-07 58.5 33 78.8
Carub.0001s0469 Capsella rubella HOM05D006033 ORTHO05D007112 3.4e-07 58.5 33 78.8
CARHR004850 Cardamine hirsuta HOM05D006033 ORTHO05D007112 3.4e-07 58.5 33 78.8
Thhalv10007699m.g Eutrema salsugineum HOM05D006033 ORTHO05D007112 3.4e-07 58.5 33 78.8
Os02g0506500 Oryza sativa ssp. japonica HOM05D006033 ORTHO05D007112 3.4e-07 58.5 33 78.8
PRCOL_00005996 Prasinoderma coloniale HOM05D006033 ORTHO05D007112 3.4e-07 58.5 32 84.4
Sp1g04220 Schrenkiella parvula HOM05D006033 ORTHO05D007112 3.4e-07 58.5 33 78.8
Ah.02g114900 Amaranthus hybridus HOM05D006033 ORTHO05D007112 4.5e-07 58.2 32 81.2
Cre13.g582350 Chlamydomonas reinhardtii HOM05D006033 ORTHO05D007112 4.5e-07 58.2 31 83.9
Oeu032516.1 Olea europaea HOM05D006033 ORTHO05D007112 4.5e-07 58.2 32 81.2
PSO017G2963 Papaver somniferum HOM05D006033 ORTHO05D007112 4.5e-07 58.2 32 81.2
PSO478G4249 Papaver somniferum HOM05D006033 ORTHO05D007112 4.5e-07 58.2 32 81.2
SMO364G0767 Selaginella moellendorffii HOM05D006033 ORTHO05D007112 4.5e-07 58.2 32 81.2
SEGI_18672 Sequoiadendron giganteum HOM05D006033 ORTHO05D007112 4.5e-07 58.2 32 81.2
BolC8t52705H Brassica oleracea HOM05D006033 ORTHO05D007112 7.6e-07 57.4 33 78.8
Pp3c7_23140 Physcomitrium patens HOM05D006033 ORTHO05D007112 2.2e-06 55.8 32 75.0
RcHm_v2.0_Chr4g0427301 Rosa chinensis HOM05D006033 ORTHO05D007112 2.2e-06 55.8 32 78.1
Haze_26394 Corylus avellana HOM05D006033 ORTHO05D007112 4.9e-06 54.7 32 68.8
Mapoly0009s0069 Marchantia polymorpha HOM05D006033 ORTHO05D007112 4.9e-06 54.7 32 75.0


User provided reference genes

Program Settings