Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0287531 Rosa chinensis HOM05D006470 ORTHO05D007978 2.8e-216 755.4 492 100.0
FAN24G3268 Fragaria x ananassa HOM05D006470 ORTHO05D007978 1.7e-168 596.7 467 85.7
FvH4_2g21070 Fragaria vesca HOM05D006470 ORTHO05D007978 5.9e-166 588.2 469 85.7
FAN27G1109 Fragaria x ananassa HOM05D006470 ORTHO05D007978 2.7e-163 579.3 461 87.2
FAN15G1173 Fragaria x ananassa HOM05D006470 ORTHO05D007978 2.6e-161 572.8 461 86.3
FAN20G2495 Fragaria x ananassa HOM05D006470 ORTHO05D007978 8.3e-160 567.8 461 87.0
Thecc.01G254400 Theobroma cacao HOM05D006470 ORTHO05D007978 1.8e-106 390.6 462 65.6
QL09p040137 Quercus lobata HOM05D006470 ORTHO05D007978 2.0e-105 387.1 449 58.4
MD10G1180100 Malus domestica HOM05D006470 ORTHO05D007978 5.8e-105 385.6 445 58.7
COL.COLO4_04011 Corchorus olitorius HOM05D006470 ORTHO05D007978 3.2e-103 379.8 463 64.8
Duzib133G1499 Durio zibethinus HOM05D006470 ORTHO05D007978 4.2e-103 379.4 442 67.9
Duzib138G0951 Durio zibethinus HOM05D006470 ORTHO05D007978 1.8e-101 374.0 464 65.3
CiPaw.03G267400 Carya illinoinensis HOM05D006470 ORTHO05D007978 3.3e-100 369.8 472 65.5
Gorai.001G179700 Gossypium raimondii HOM05D006470 ORTHO05D007978 9.0e-98 361.7 447 62.4
Gohir.D07G156600 Gossypium hirsutum HOM05D006470 ORTHO05D007978 1.2e-97 361.3 447 62.0
Dinv22382 Davidia involucrata HOM05D006470 ORTHO05D007978 3.2e-95 353.2 402 65.2
Manes.13G036500 Manihot esculenta HOM05D006470 ORTHO05D007978 8.2e-91 338.6 467 62.7
Manes.12G034500 Manihot esculenta HOM05D006470 ORTHO05D007978 1.2e-89 334.7 473 62.8
Hma1.2p1_0576F.1_g181850 Hydrangea macrophylla HOM05D006470 ORTHO05D007978 5.8e-89 332.4 465 52.3
TWI18G0736 Tripterygium wilfordii HOM05D006470 ORTHO05D007978 3.8e-88 329.7 464 61.0
Cpa.g.sc165.30 Carica papaya HOM05D006470 ORTHO05D007978 2.7e-86 323.6 421 64.8
Lj5g0015356 Lotus japonicus HOM05D006470 ORTHO05D007978 2.5e-84 317.0 449 60.8
Potri.005G227600 Populus trichocarpa HOM05D006470 ORTHO05D007978 1.0e-80 305.1 466 57.5
arahy.Tifrunner.gnm1.ann1.NTND9X Arachis hypogaea HOM05D006470 ORTHO05D007978 5.0e-80 302.8 460 56.3
Ca_09663_v3 Cicer arietinum L. HOM05D006470 ORTHO05D007978 5.0e-80 302.8 426 59.4
TWI12G0101 Tripterygium wilfordii HOM05D006470 ORTHO05D007978 7.2e-79 298.9 443 58.7
SGA_v2.0_scaffold1G00631 Striga asiatica HOM05D006470 ORTHO05D007978 3.6e-78 296.6 418 52.2
Lj2P1147T22 Lonicera japonica HOM05D006470 ORTHO05D007978 6.1e-78 295.8 468 59.6
Psat6g062280 Pisum sativum HOM05D006470 ORTHO05D007978 6.1e-78 295.8 408 60.5
Thhalv10027034m.g Eutrema salsugineum HOM05D006470 ORTHO05D007978 7.9e-78 295.4 420 51.0
Phvul.007G191000 Phaseolus vulgaris HOM05D006470 ORTHO05D007978 5.1e-77 292.7 441 58.7
Lalb_Chr25g0289891 Lupinus albus HOM05D006470 ORTHO05D007978 8.8e-77 292.0 455 58.5
Gohir.A07G150300 Gossypium hirsutum HOM05D006470 ORTHO05D007978 1.1e-76 291.6 447 57.9
Prupe.8G220100 Prunus persica HOM05D006470 ORTHO05D007978 1.1e-76 291.6 466 61.6
Glyma.10G038800 Glycine max HOM05D006470 ORTHO05D007978 2.5e-76 290.4 468 50.6
Nitab4.5_0001945g0030 Nicotiana tabacum HOM05D006470 ORTHO05D007978 2.5e-76 290.4 400 61.0
Sp7g26550 Schrenkiella parvula HOM05D006470 ORTHO05D007978 7.4e-76 288.9 378 59.0
Nitab4.5_0003295g0060 Nicotiana tabacum HOM05D006470 ORTHO05D007978 1.3e-75 288.1 409 61.6
BcaNung04289 Brassica carinata HOM05D006470 ORTHO05D007978 1.1e-74 285.0 407 51.8
VMungo0720G2572 Vigna mungo HOM05D006470 ORTHO05D007978 2.4e-74 283.9 432 58.8
BraA01t00881Z Brassica rapa HOM05D006470 ORTHO05D007978 3.1e-74 283.5 378 55.6
Peaxi162Scf00415g00003 Petunia axillaris HOM05D006470 ORTHO05D007978 1.2e-73 281.6 432 57.6
C01p10920 Brassica napus HOM05D006470 ORTHO05D007978 4.5e-73 279.6 397 57.7
HanXRQChr10g0280761 Helianthus annuus HOM05D006470 ORTHO05D007978 5.9e-73 279.3 448 58.0
A01p09340 Brassica napus HOM05D006470 ORTHO05D007978 1.0e-72 278.5 378 55.3
MBI10_g13794_MAGBIO Magnolia biondii HOM05D006470 ORTHO05D007978 1.0e-72 278.5 432 62.7
Sabra05G0175600 Salix brachista HOM05D006470 ORTHO05D007978 1.0e-72 278.5 457 55.8
Aqoxy5G00193 Aquilegia oxysepala HOM05D006470 ORTHO05D007978 1.9e-71 274.2 446 58.5
Aa31LG2G21810 Aethionema arabicum HOM05D006470 ORTHO05D007978 4.2e-71 273.1 404 54.7
BcaC09g51655 Brassica carinata HOM05D006470 ORTHO05D007978 5.5e-71 272.7 397 56.2
BolC1t01056H Brassica oleracea HOM05D006470 ORTHO05D007978 5.5e-71 272.7 397 56.2
Medtr1g069695 Medicago truncatula HOM05D006470 ORTHO05D007978 1.2e-70 271.6 455 54.3
Rhsim13G0037300 Rhododendron simsii HOM05D006470 ORTHO05D007978 2.1e-70 270.8 456 55.9
SHI26693 Sapria himalayana HOM05D006470 ORTHO05D007978 2.1e-70 270.8 425 51.5
Lsat_1_v5_gn_9_10681 Lactuca sativa HOM05D006470 ORTHO05D007978 6.1e-70 269.2 453 55.2
Actinidia37529 Actinidia chinensis HOM05D006470 ORTHO05D007978 1.8e-69 267.7 458 51.1
AT4G28560 Arabidopsis thaliana HOM05D006470 ORTHO05D007978 3.9e-69 266.5 412 60.7
AL7G23980 Arabidopsis lyrata HOM05D006470 ORTHO05D007978 1.1e-68 265.0 379 60.9
Solyc09g072630.3 Solanum lycopersicum HOM05D006470 ORTHO05D007978 2.0e-68 264.2 403 59.3
BcaNung04688 Brassica carinata HOM05D006470 ORTHO05D007978 7.4e-68 262.3 407 42.0
CARHR236350 Cardamine hirsuta HOM05D006470 ORTHO05D007978 1.1e-66 258.5 380 59.7
FAN27G1256 Fragaria x ananassa HOM05D006470 ORTHO05D007978 4.1e-66 256.5 175 85.7
DCAR_012563 Daucus carota HOM05D006470 ORTHO05D007978 1.2e-65 255.0 456 46.7
Haze_24664 Corylus avellana HOM05D006470 ORTHO05D007978 4.5e-65 253.1 205 62.4
Atru.BG.79.p Acer truncatum HOM05D006470 ORTHO05D007978 1.3e-64 251.5 324 70.4
CSS0034739 Camellia sinensis var. sinensis HOM05D006470 ORTHO05D007978 1.3e-64 251.5 470 52.8
Ciclev10020031m.g Citrus clementina HOM05D006470 ORTHO05D007978 8.5e-64 248.8 185 67.0
Cfa002452 Carpinus fangiana HOM05D006470 ORTHO05D007978 1.1e-63 248.4 205 60.5
PSO210G2696 Papaver somniferum HOM05D006470 ORTHO05D007978 2.5e-63 247.3 441 56.9
CSS0011402 Camellia sinensis var. sinensis HOM05D006470 ORTHO05D007978 7.2e-63 245.7 469 52.5
AUR62025485 Chenopodium quinoa HOM05D006470 ORTHO05D007978 1.2e-62 245.0 427 49.2
Sc05g0003180 Simmondsia chinensis HOM05D006470 ORTHO05D007978 1.0e-61 241.9 407 48.2
vmacro02686 Vaccinium macrocarpon HOM05D006470 ORTHO05D007978 2.0e-60 237.7 416 60.1
PSO832G0066 Papaver somniferum HOM05D006470 ORTHO05D007978 1.4e-58 231.5 431 57.3
Psat6g062240 Pisum sativum HOM05D006470 ORTHO05D007978 1.8e-58 231.1 350 61.7
SalBow4G0507 Salvia bowleyana HOM05D006470 ORTHO05D007978 3.1e-58 230.3 456 44.3
ClCG07G001200 Citrullus lanatus HOM05D006470 ORTHO05D007978 4.5e-57 226.5 439 54.4
Psat6g063200 Pisum sativum HOM05D006470 ORTHO05D007978 3.2e-55 220.3 345 61.7
MELO3C012860.2 Cucumis melo HOM05D006470 ORTHO05D007978 3.6e-54 216.9 434 53.2
Migut.D00451 Erythranthe guttata HOM05D006470 ORTHO05D007978 4.7e-54 216.5 448 48.0
Cc01_g18070 Coffea canephora HOM05D006470 ORTHO05D007978 1.8e-53 214.5 458 50.4
Nn3g19710 Nelumbo nucifera HOM05D006470 ORTHO05D007978 1.7e-51 208.0 435 53.6
BcaNung04689 Brassica carinata HOM05D006470 ORTHO05D007978 1.2e-49 201.8 206 50.5
Carub.0007s1211 Capsella rubella HOM05D006470 ORTHO05D007978 1.2e-49 201.8 161 60.2
Hma1.2p1_0273F.1_g109440 Hydrangea macrophylla HOM05D006470 ORTHO05D007978 2.0e-49 201.1 402 34.6
THA.LOC104814525 Tarenaya hassleriana HOM05D006470 ORTHO05D007978 2.7e-49 200.7 151 61.6
ClCG00G001450 Citrullus lanatus HOM05D006470 ORTHO05D007978 6.5e-48 196.1 196 51.5
Sed0015172 Sechium edule HOM05D006470 ORTHO05D007978 1.5e-47 194.9 195 51.3
Sed0003902 Sechium edule HOM05D006470 ORTHO05D007978 2.5e-47 194.1 188 52.7
CsaV3_3G022070 Cucumis sativus L. HOM05D006470 ORTHO05D007978 9.4e-47 192.2 194 50.0
TAR362G1291 Trochodendron aralioides HOM05D006470 ORTHO05D007978 1.6e-46 191.4 191 53.4
Nn1g02880 Nelumbo nucifera HOM05D006470 ORTHO05D007978 2.1e-46 191.0 313 66.1
Lsat_1_v5_gn_5_182700 Lactuca sativa HOM05D006470 ORTHO05D007978 1.4e-45 188.3 196 53.6
Oeu052037.1 Olea europaea HOM05D006470 ORTHO05D007978 5.4e-42 176.4 311 46.3
ECA248G1135 Erigeron canadensis HOM05D006470 ORTHO05D007978 4.5e-41 173.3 170 51.8
Glyma.13G125201 Glycine max HOM05D006470 ORTHO05D007978 8.6e-40 169.1 146 61.0
PGSC0003DMG400010325 Solanum tuberosum HOM05D006470 ORTHO05D007978 2.1e-38 164.5 149 53.7
Sopen09g028440 Solanum pennellii HOM05D006470 ORTHO05D007978 8.0e-38 162.5 173 48.6
Oeu039680.1 Olea europaea HOM05D006470 ORTHO05D007978 3.0e-37 160.6 162 54.9
CDE08G1533 Ceratophyllum demersum HOM05D006470 ORTHO05D007978 4.0e-37 160.2 189 42.9
CAN.G1251.2 Capsicum annuum HOM05D006470 ORTHO05D007978 1.4e-34 151.8 152 50.0
CAN.G1868.1 Capsicum annuum HOM05D006470 ORTHO05D007978 1.4e-34 151.8 152 50.0
HPP92_012855 Vanilla planifolia HOM05D006470 ORTHO05D007978 1.8e-34 151.4 183 47.0
ATR0736G105 Amborella trichopoda HOM05D006470 ORTHO05D007978 2.4e-34 151.0 381 53.0
CDE02G3387 Ceratophyllum demersum HOM05D006470 ORTHO05D007978 4.3e-31 140.2 179 44.1
EL10Ac7g17624 Beta vulgaris HOM05D006470 ORTHO05D007978 3.6e-30 137.1 208 39.9
AUR62008754 Chenopodium quinoa HOM05D006470 ORTHO05D007978 5.2e-29 133.3 313 47.6
SEGI_23933 Sequoiadendron giganteum HOM05D006470 ORTHO05D007978 9.8e-28 129.0 174 40.2
Os06g0627500 Oryza sativa ssp. japonica HOM05D006470 ORTHO05D007978 2.2e-27 127.9 184 41.3
SMO358G0434 Selaginella moellendorffii HOM05D006470 ORTHO05D007978 1.4e-26 125.2 149 43.6
ATR0681G334 Amborella trichopoda HOM05D006470 ORTHO05D007978 2.4e-26 124.4 160 42.5
TPR.G29693 Trifolium pratense HOM05D006470 ORTHO05D007978 7.0e-26 122.9 119 52.1
unitig_0.g163 Utricularia gibba HOM05D006470 ORTHO05D007978 3.3e-23 114.0 108 52.8
Actinidia30147 Actinidia chinensis HOM05D006470 ORTHO05D007978 1.2e-22 112.1 112 51.8
Medtr1g069665 Medicago truncatula HOM05D006470 ORTHO05D007978 6.8e-21 106.3 183 37.7
Medtr1g069680 Medicago truncatula HOM05D006470 ORTHO05D007978 9.8e-20 102.4 158 41.1
SMO118G0043 Selaginella moellendorffii HOM05D006470 ORTHO05D007978 2.9e-19 100.9 162 38.3
Pp3c23_19100 Physcomitrium patens HOM05D006470 ORTHO05D004210 1.2e-12 79.0 179 32.4
THA.LOC104824265 Tarenaya hassleriana HOM05D004034 ORTHO05D004210 1.2e-12 79.0 176 33.0
Actinidia15759 Actinidia chinensis HOM05D007391 ORTHO05D009446 7.6e-12 76.3 163 33.7
Medtr1g069675 Medicago truncatula HOM05D006470 ORTHO05D007978 9.9e-12 75.9 89 44.9
COL.COLO4_33708 Corchorus olitorius HOM05D004034 ORTHO05D004210 2.9e-11 74.3 156 32.7
Nn8g39512 Nelumbo nucifera HOM05D007391 ORTHO05D009446 3.7e-11 73.9 143 36.4
C04p03880 Brassica napus HOM05D004034 ORTHO05D004210 8.4e-11 72.8 176 29.5
BolC4t22024H Brassica oleracea HOM05D004034 ORTHO05D004210 8.4e-11 72.8 176 29.5
BraA05t19313Z Brassica rapa HOM05D004034 ORTHO05D004210 8.4e-11 72.8 176 29.5
Solyc10g007830.1 Solanum lycopersicum HOM05D004034 ORTHO05D004210 8.4e-11 72.8 173 30.1
A05p03230 Brassica napus HOM05D004034 ORTHO05D004210 1.4e-10 72.0 176 29.5
Mapoly0066s0046 Marchantia polymorpha HOM05D006470 ORTHO05D007978 1.4e-10 72.0 150 34.0
THA.LOC104802268 Tarenaya hassleriana HOM05D004034 ORTHO05D004210 1.4e-10 72.0 177 32.2
CARHR137880 Cardamine hirsuta HOM05D004034 ORTHO05D004210 2.4e-10 71.2 178 29.8
Hma1.2p1_0178F.1_g078140 Hydrangea macrophylla HOM05D004034 ORTHO05D004210 2.4e-10 71.2 153 28.1
TWI59G0196 Tripterygium wilfordii HOM05D004034 ORTHO05D004210 2.4e-10 71.2 158 32.3
HPP92_014007 Vanilla planifolia HOM05D004034 ORTHO05D004210 2.4e-10 71.2 180 29.4
HPP92_026836 Vanilla planifolia HOM05D004034 ORTHO05D004210 2.4e-10 71.2 180 29.4
CANSAT64G0821 Cannabis sativa HOM05D004034 ORTHO05D004210 4.1e-10 70.5 171 30.4
Carub.0004s2524 Capsella rubella HOM05D004034 ORTHO05D004210 4.1e-10 70.5 189 29.1
Thecc.01G158900 Theobroma cacao HOM05D004034 ORTHO05D004210 7.1e-10 69.7 188 29.3
Eucgr.A01957 Eucalyptus grandis HOM05D004034 ORTHO05D004210 9.2e-10 69.3 151 30.5
Hma1.2p1_0036F.1_g023770 Hydrangea macrophylla HOM05D004034 ORTHO05D004210 9.2e-10 69.3 155 27.1
PGSC0003DMG400028627 Solanum tuberosum HOM05D007391 ORTHO05D009446 1.2e-09 68.9 182 29.7
Zm00001eb353740 Zea mays HOM05D020404 ORTHO05D004210 2.1e-09 68.2 181 32.6
Prupe.3G087800 Prunus persica HOM05D007391 ORTHO05D009446 2.7e-09 67.8 140 35.7
SMO339G0042 Selaginella moellendorffii HOM05D007391 ORTHO05D009446 2.7e-09 67.8 124 37.9
Os01g0729400 Oryza sativa ssp. japonica HOM05D004034 ORTHO05D004210 3.5e-09 67.4 132 32.6
Ciclev10025464m.g Citrus clementina HOM05D007391 ORTHO05D009446 4.6e-09 67.0 142 33.8
CDE02G2129 Ceratophyllum demersum HOM05D007391 ORTHO05D009446 7.8e-09 66.2 168 30.4
FAN02G3910 Fragaria x ananassa HOM05D007391 ORTHO05D009446 7.8e-09 66.2 140 36.4
SHI08938 Sapria himalayana HOM05D007391 ORTHO05D009446 1.0e-08 65.9 169 30.2
ECA247G3329 Erigeron canadensis HOM05D000038 ORTHO05D003992 1.3e-08 65.5 140 33.6
FvH4_6g29640 Fragaria vesca HOM05D007391 ORTHO05D009446 1.3e-08 65.5 155 34.2
FAN09G3908 Fragaria x ananassa HOM05D007391 ORTHO05D009446 1.3e-08 65.5 155 34.2
FAN14G5578 Fragaria x ananassa HOM05D007391 ORTHO05D009446 1.3e-08 65.5 155 34.2
Lj3g0005617 Lotus japonicus HOM05D007391 ORTHO05D009446 1.3e-08 65.5 140 37.1
Sp4g24920 Schrenkiella parvula HOM05D004034 ORTHO05D004210 1.3e-08 65.5 178 29.8
Thhalv10016617m.g Eutrema salsugineum HOM05D004034 ORTHO05D004210 2.3e-08 64.7 153 30.1
SEGI_08431 Sequoiadendron giganteum HOM05D009907 ORTHO05D000062 2.3e-08 64.7 157 29.3
AL4G41410 Arabidopsis lyrata HOM05D004034 ORTHO05D004210 3.0e-08 64.3 178 28.1
CARHR013610 Cardamine hirsuta HOM05D003233 ORTHO05D003694 3.0e-08 64.3 131 35.1
Peaxi162Scf00035g00315 Petunia axillaris HOM05D004034 ORTHO05D004210 6.6e-08 63.2 153 28.8
SMO239G0192 Selaginella moellendorffii HOM05D004034 ORTHO05D004210 8.6e-08 62.8 152 30.3
vmacro18998 Vaccinium macrocarpon HOM05D007391 ORTHO05D009446 8.6e-08 62.8 166 28.3
SGA_v2.0_scaffold117G32353 Striga asiatica HOM05D007391 ORTHO05D009446 1.5e-07 62.0 141 34.0
C05p10120 Brassica napus HOM05D003233 ORTHO05D003694 1.9e-07 61.6 130 35.4
BolC5t29758H Brassica oleracea HOM05D003233 ORTHO05D003694 1.9e-07 61.6 130 35.4
RcHm_v2.0_Chr2g0135241 Rosa chinensis HOM05D007391 ORTHO05D009446 2.5e-07 61.2 155 32.9
HanXRQChr17g0564641 Helianthus annuus HOM05D004034 ORTHO05D004210 5.6e-07 60.1 183 29.0
BcaC06g31126 Brassica carinata HOM05D003233 ORTHO05D003694 1.2e-06 58.9 192 28.6
Migut.D01079 Erythranthe guttata HOM05D007391 ORTHO05D009446 1.2e-06 58.9 122 34.4
Carub.0001s1296 Capsella rubella HOM05D003233 ORTHO05D003694 1.6e-06 58.5 187 30.5
Hund05775 Selenicereus undatus HOM05D003233 ORTHO05D003694 1.6e-06 58.5 133 33.1
THA.LOC104825720 Tarenaya hassleriana HOM05D003233 ORTHO05D003694 2.1e-06 58.2 180 29.4
Carub.0005s0349 Capsella rubella HOM05D003233 ORTHO05D003694 2.8e-06 57.8 132 31.1
MBI02_g24301_MAGBIO Magnolia biondii HOM05D004034 ORTHO05D004210 2.8e-06 57.8 172 30.2
A06p42610 Brassica napus HOM05D003233 ORTHO05D003694 4.7e-06 57.0 130 32.3
BraA06t27176Z Brassica rapa HOM05D003233 ORTHO05D003694 4.7e-06 57.0 130 32.3
Sp2g14930 Schrenkiella parvula HOM05D003233 ORTHO05D003694 4.7e-06 57.0 193 27.5
arahy.Tifrunner.gnm1.ann1.NUM2HH Arachis hypogaea HOM05D000053 ORTHO05D000035 6.2e-06 56.6 84 39.3
C07p34540 Brassica napus HOM05D003233 ORTHO05D003694 6.2e-06 56.6 426 40.4
BolC7t43985H Brassica oleracea HOM05D003233 ORTHO05D003694 6.2e-06 56.6 426 40.4
Lj1P1172T22 Lonicera japonica HOM05D004034 ORTHO05D004210 6.2e-06 56.6 147 30.6
Hund25113 Selenicereus undatus HOM05D003233 ORTHO05D003694 6.2e-06 56.6 139 33.1


User provided reference genes

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