Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0287011 Rosa chinensis HOM05D000132 ORTHO05D000058 3.0e-53 212.6 105 100.0
RcHm_v2.0_Chr0c16g0499891 Rosa chinensis HOM05D000132 ORTHO05D000058 1.9e-26 123.6 92 71.7
RcHm_v2.0_Chr6g0287171 Rosa chinensis HOM05D000132 ORTHO05D000058 2.4e-26 123.2 92 71.7
RcHm_v2.0_Chr3g0491341 Rosa chinensis HOM05D000132 ORTHO05D000058 1.3e-24 117.5 89 70.8
RcHm_v2.0_Chr0c16g0499831 Rosa chinensis HOM05D000132 ORTHO05D000058 1.1e-23 114.4 90 68.9
RcHm_v2.0_Chr6g0286951 Rosa chinensis HOM05D000132 ORTHO05D000058 1.1e-23 114.4 89 68.5
FAN20G0489 Fragaria x ananassa HOM05D000132 ORTHO05D000058 7.3e-23 111.7 93 66.7
Prupe.8G217400 Prunus persica HOM05D000132 ORTHO05D000058 9.5e-23 111.3 101 56.4
FAN24G1177 Fragaria x ananassa HOM05D000132 ORTHO05D000058 1.6e-22 110.5 94 64.9
FvH4_2g20790 Fragaria vesca HOM05D000132 ORTHO05D000058 6.2e-22 108.6 94 63.8
Prupe.8G217600 Prunus persica HOM05D000132 ORTHO05D000058 3.1e-21 106.3 93 60.2
RcHm_v2.0_Chr0c16g0499671 Rosa chinensis HOM05D000132 ORTHO05D000058 1.5e-20 104.0 89 65.2
RcHm_v2.0_Chr6g0287091 Rosa chinensis HOM05D000132 ORTHO05D000058 2.6e-20 103.2 89 65.2
MD10G1178200 Malus domestica HOM05D000132 ORTHO05D000058 1.3e-19 100.9 93 60.2
Prupe.8G217200 Prunus persica HOM05D000132 ORTHO05D000058 2.2e-19 100.1 89 58.4
FAN27G3089 Fragaria x ananassa HOM05D000132 ORTHO05D000058 2.4e-18 96.7 93 57.0
RcHm_v2.0_Chr6g0287061 Rosa chinensis HOM05D000132 ORTHO05D000058 9.2e-18 94.7 87 63.2
Prupe.8G217000 Prunus persica HOM05D000132 ORTHO05D000058 1.2e-17 94.4 89 55.1
RcHm_v2.0_Chr6g0287141 Rosa chinensis HOM05D000132 ORTHO05D000058 4.6e-17 92.4 93 55.9
MD00G1061200 Malus domestica HOM05D000132 ORTHO05D000058 1.0e-16 91.3 89 57.3
FAN27G3296 Fragaria x ananassa HOM05D000132 ORTHO05D000058 1.1e-15 87.8 93 52.7
RcHm_v2.0_Chr0c16g0499801 Rosa chinensis HOM05D000132 ORTHO05D000058 1.5e-15 87.4 93 54.8
FvH4_2g20750 Fragaria vesca HOM05D000132 ORTHO05D000058 3.3e-15 86.3 89 52.8
FAN15G0453 Fragaria x ananassa HOM05D000132 ORTHO05D000058 3.3e-15 86.3 89 52.8
FAN24G0051 Fragaria x ananassa HOM05D000132 ORTHO05D000058 3.3e-15 86.3 89 52.8
MD12G1229700 Malus domestica HOM05D000132 ORTHO05D000058 4.3e-15 85.9 96 55.2
MD05G1190800 Malus domestica HOM05D000132 ORTHO05D000058 5.6e-15 85.5 96 54.2
MD11G1221700 Malus domestica HOM05D000132 ORTHO05D000058 1.2e-14 84.3 92 52.2
MD04G1039700 Malus domestica HOM05D000132 ORTHO05D000058 2.1e-14 83.6 100 50.0
RcHm_v2.0_Chr6g0286931 Rosa chinensis HOM05D000132 ORTHO05D000058 2.1e-14 83.6 89 52.8
MD05G1190000 Malus domestica HOM05D000132 ORTHO05D000058 3.6e-14 82.8 86 53.5
FAN20G1780 Fragaria x ananassa HOM05D000132 ORTHO05D000058 4.7e-14 82.4 89 51.7
MD05G1191500 Malus domestica HOM05D000132 ORTHO05D000058 4.7e-14 82.4 84 54.8
Atru.chr5.1812 Acer truncatum HOM05D000132 ORTHO05D000058 8.1e-14 81.6 98 51.0
MD05G1190200 Malus domestica HOM05D000132 ORTHO05D000058 8.1e-14 81.6 96 52.1
Gohir.D11G138800 Gossypium hirsutum HOM05D000132 ORTHO05D000058 1.1e-13 81.3 92 48.9
Gorai.007G148900 Gossypium raimondii HOM05D000132 ORTHO05D000058 1.1e-13 81.3 92 48.9
COL.COLO4_10591 Corchorus olitorius HOM05D000132 ORTHO05D000058 3.1e-13 79.7 90 47.8
MD10G1178100 Malus domestica HOM05D000132 ORTHO05D000058 3.1e-13 79.7 97 51.5
MD00G1124700 Malus domestica HOM05D000132 ORTHO05D000058 4.0e-13 79.3 99 46.5
COL.COLO4_08949 Corchorus olitorius HOM05D000132 ORTHO05D000058 1.5e-12 77.4 97 48.5
MD00G1170700 Malus domestica HOM05D000132 ORTHO05D000058 1.5e-12 77.4 98 46.9
MD04G1006600 Malus domestica HOM05D000132 ORTHO05D000058 1.5e-12 77.4 99 45.5
Prupe.8G226900 Prunus persica HOM05D000132 ORTHO05D000058 2.6e-12 76.6 91 46.2
DCAR_012610 Daucus carota HOM05D000132 ORTHO05D000058 5.8e-12 75.5 94 47.9
Thecc.10G128600 Theobroma cacao HOM05D000132 ORTHO05D000058 5.8e-12 75.5 93 48.4
Thecc.01G252700 Theobroma cacao HOM05D000132 ORTHO05D000058 7.6e-12 75.1 93 48.4
Prupe.8G217700 Prunus persica HOM05D000132 ORTHO05D000058 9.9e-12 74.7 89 44.9
Potri.014G195100 Populus trichocarpa HOM05D000132 ORTHO05D000058 1.7e-11 73.9 93 47.3
Prupe.8G217100 Prunus persica HOM05D000132 ORTHO05D000058 1.7e-11 73.9 85 49.4
Dinv34663 Davidia involucrata HOM05D000132 ORTHO05D000058 2.2e-11 73.6 82 53.7
Duzib138G1401 Durio zibethinus HOM05D000132 ORTHO05D000058 2.2e-11 73.6 86 51.2
Duzib211G0329 Durio zibethinus HOM05D000132 ORTHO05D000058 2.9e-11 73.2 90 50.0
Duzib133G0228 Durio zibethinus HOM05D000132 ORTHO05D000058 4.9e-11 72.4 89 49.4
GSVIVG01028398001 Vitis vinifera HOM05D000132 ORTHO05D000058 1.1e-10 71.2 98 43.9
Cpa.g.sc165.52 Carica papaya HOM05D000132 ORTHO05D000058 2.4e-10 70.1 90 44.4
ECA248G1914 Erigeron canadensis HOM05D000132 ORTHO05D000058 2.4e-10 70.1 97 44.3
Lalb_Chr20g0113711 Lupinus albus HOM05D000132 ORTHO05D000058 2.4e-10 70.1 85 45.9
Potri.002G258200 Populus trichocarpa HOM05D000132 ORTHO05D000058 2.4e-10 70.1 93 43.0
Dinv16387 Davidia involucrata HOM05D000132 ORTHO05D000058 3.2e-10 69.7 87 48.3
CiPaw.03G269100 Carya illinoinensis HOM05D000132 ORTHO05D000058 5.4e-10 68.9 82 50.0
Haze_21857 Corylus avellana HOM05D000132 ORTHO05D000058 5.4e-10 68.9 102 45.1
Duzib133G0320 Durio zibethinus HOM05D000132 ORTHO05D000058 5.4e-10 68.9 89 47.2
Sabra02G0196500 Salix brachista HOM05D000132 ORTHO05D000058 5.4e-10 68.9 88 45.5
TWI75G1454 Tripterygium wilfordii HOM05D000132 ORTHO05D000058 7.1e-10 68.6 99 40.4
TAR365G0885 Trochodendron aralioides HOM05D000132 ORTHO05D000058 7.1e-10 68.6 81 49.4
Duzib133G0901 Durio zibethinus HOM05D000132 ORTHO05D000058 9.2e-10 68.2 83 50.6
HanXRQChr01g0015051 Helianthus annuus HOM05D000132 ORTHO05D000058 9.2e-10 68.2 103 39.8
vmacro02704 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 9.2e-10 68.2 87 46.0
Dinv16386 Davidia involucrata HOM05D000132 ORTHO05D000058 1.2e-09 67.8 90 46.7
CANSAT01G1741 Cannabis sativa HOM05D000132 ORTHO05D000058 1.6e-09 67.4 93 49.5
MD00G1124500 Malus domestica HOM05D000132 ORTHO05D000058 1.6e-09 67.4 89 48.3
Potri.002G258000 Populus trichocarpa HOM05D000132 ORTHO05D000058 1.6e-09 67.4 89 42.7
Potri.002G258400 Populus trichocarpa HOM05D000132 ORTHO05D000058 1.6e-09 67.4 89 42.7
Haze_24896 Corylus avellana HOM05D000132 ORTHO05D000058 3.5e-09 66.2 89 48.3
TAR365G0281 Trochodendron aralioides HOM05D000132 ORTHO05D000058 3.5e-09 66.2 82 47.6
Haze_24888 Corylus avellana HOM05D000132 ORTHO05D000058 4.6e-09 65.9 96 44.8
DCAR_012598 Daucus carota HOM05D000132 ORTHO05D000058 4.6e-09 65.9 89 46.1
Duzib133G0647 Durio zibethinus HOM05D000132 ORTHO05D000058 4.6e-09 65.9 86 48.8
Dinv16388 Davidia involucrata HOM05D000132 ORTHO05D000058 6.0e-09 65.5 86 46.5
VMungo1383G0349 Vigna mungo HOM05D000132 ORTHO05D000058 6.0e-09 65.5 80 47.5
VMungo1383G3621 Vigna mungo HOM05D000132 ORTHO05D000058 6.0e-09 65.5 80 47.5
TWI12G1031 Tripterygium wilfordii HOM05D000132 ORTHO05D000058 7.8e-09 65.1 88 44.3
Cfa002474 Carpinus fangiana HOM05D000132 ORTHO05D000058 1.0e-08 64.7 93 44.1
CiPaw.03G269300 Carya illinoinensis HOM05D000132 ORTHO05D000058 1.0e-08 64.7 82 48.8
Glyma.19G167400 Glycine max HOM05D000132 ORTHO05D000058 1.0e-08 64.7 81 48.1
Phvul.001G163700 Phaseolus vulgaris HOM05D000132 ORTHO05D000058 1.0e-08 64.7 80 47.5
TAR365G0054 Trochodendron aralioides HOM05D000132 ORTHO05D000058 1.0e-08 64.7 82 47.6
DCAR_012601 Daucus carota HOM05D000132 ORTHO05D000058 1.3e-08 64.3 90 44.4
Phvul.001G163800 Phaseolus vulgaris HOM05D000132 ORTHO05D000058 1.3e-08 64.3 81 46.9
QL09p041002 Quercus lobata HOM05D000132 ORTHO05D000058 1.3e-08 64.3 82 48.8
Cfa019647 Carpinus fangiana HOM05D000132 ORTHO05D000058 1.7e-08 63.9 95 48.4
Sabra02G0196400 Salix brachista HOM05D000132 ORTHO05D000058 1.7e-08 63.9 87 43.7
Glyma.03G165800 Glycine max HOM05D000132 ORTHO05D000058 2.3e-08 63.5 82 46.3
Gohir.D07G157300 Gossypium hirsutum HOM05D000132 ORTHO05D047727 2.3e-08 63.5 89 40.4
Haze_24688 Corylus avellana HOM05D000132 ORTHO05D000058 3.0e-08 63.2 108 40.7
Rhsim13G0039300 Rhododendron simsii HOM05D000132 ORTHO05D000058 3.9e-08 62.8 84 46.4
CiPaw.03G269400 Carya illinoinensis HOM05D000132 ORTHO05D000058 5.1e-08 62.4 81 46.9
ECA248G2796 Erigeron canadensis HOM05D000132 ORTHO05D000058 5.1e-08 62.4 86 43.0
Ciclev10018554m.g Citrus clementina HOM05D000132 ORTHO05D000058 6.6e-08 62.0 84 44.0
COL.COLO4_10592 Corchorus olitorius HOM05D000132 ORTHO05D000058 6.6e-08 62.0 82 42.7
Eucgr.A01326 Eucalyptus grandis HOM05D000132 ORTHO05D000058 6.6e-08 62.0 90 41.1
Glyma.03G166300 Glycine max HOM05D000132 ORTHO05D000058 6.6e-08 62.0 81 48.1
Glyma.19G167300 Glycine max HOM05D000132 ORTHO05D000058 6.6e-08 62.0 81 46.9
Peaxi162Scf00415g00519 Petunia axillaris HOM05D000132 ORTHO05D000058 6.6e-08 62.0 89 41.6
Eucgr.A01328 Eucalyptus grandis HOM05D000132 ORTHO05D000058 1.5e-07 60.8 89 40.4
AUR62025447 Chenopodium quinoa HOM05D000132 ORTHO05D000058 1.9e-07 60.5 83 39.8
SGA_v2.0_scaffold3G01607 Striga asiatica HOM05D000132 ORTHO05D000058 2.5e-07 60.1 87 39.1
HanXRQChr01g0015031 Helianthus annuus HOM05D000132 ORTHO05D000058 3.3e-07 59.7 92 39.1
GSVIVG01028396001 Vitis vinifera HOM05D000132 ORTHO05D000058 3.3e-07 59.7 93 39.8
CANSAT01G3072 Cannabis sativa HOM05D000132 ORTHO05D000058 4.3e-07 59.3 81 44.4
Haze_24687 Corylus avellana HOM05D000132 ORTHO05D000058 4.3e-07 59.3 94 45.7
Haze_24891 Corylus avellana HOM05D000132 ORTHO05D000058 4.3e-07 59.3 105 42.9
DCAR_012599 Daucus carota HOM05D000132 ORTHO05D000058 4.3e-07 59.3 79 45.6
Eucgr.A01339 Eucalyptus grandis HOM05D000132 ORTHO05D000058 4.3e-07 59.3 88 39.8
Medtr7g096980 Medicago truncatula HOM05D000132 ORTHO05D000058 4.3e-07 59.3 80 41.2
Aqoxy3G01183 Aquilegia oxysepala HOM05D000132 ORTHO05D000058 5.6e-07 58.9 82 40.2
Ciclev10018560m.g Citrus clementina HOM05D000132 ORTHO05D000058 5.6e-07 58.9 84 41.7
Aqoxy3G01173 Aquilegia oxysepala HOM05D000132 ORTHO05D000058 7.3e-07 58.5 54 46.3
CAN.G1380.2 Capsicum annuum HOM05D000132 ORTHO05D000058 7.3e-07 58.5 80 43.8
Haze_16603 Corylus avellana HOM05D000132 ORTHO05D000058 7.3e-07 58.5 96 41.7
Gohir.A08G191800 Gossypium hirsutum HOM05D000132 ORTHO05D000058 7.3e-07 58.5 89 39.3
CANSAT01G1804 Cannabis sativa HOM05D000132 ORTHO05D000058 9.6e-07 58.2 92 40.2
DCAR_012595 Daucus carota HOM05D000053 ORTHO05D000035 9.6e-07 58.2 79 45.6
DCAR_012602 Daucus carota HOM05D000132 ORTHO05D000058 9.6e-07 58.2 79 45.6
Psat3g054240 Pisum sativum HOM05D000132 ORTHO05D000058 9.6e-07 58.2 83 42.2
QL09p041064 Quercus lobata HOM05D000132 ORTHO05D000058 9.6e-07 58.2 93 41.9
TPR.G25017 Trifolium pratense HOM05D000132 ORTHO05D000058 9.6e-07 58.2 80 41.2
AUR62008779 Chenopodium quinoa HOM05D000132 ORTHO05D000058 1.2e-06 57.8 86 40.7
Lalb_Chr20g0113761 Lupinus albus HOM05D000132 ORTHO05D000058 1.2e-06 57.8 80 40.0
Nn1g02917 Nelumbo nucifera HOM05D000132 ORTHO05D000058 1.2e-06 57.8 82 41.5
CANSAT01G1585 Cannabis sativa HOM05D000132 ORTHO05D000058 1.6e-06 57.4 83 39.8
Eucgr.A01333 Eucalyptus grandis HOM05D000132 ORTHO05D000058 1.6e-06 57.4 85 43.5
PGSC0003DMG400013898 Solanum tuberosum HOM05D000053 ORTHO05D000035 1.6e-06 57.4 85 41.2
Sopen09g028600 Solanum pennellii HOM05D000132 ORTHO05D000058 2.1e-06 57.0 84 41.7
THA.LOC104801151 Tarenaya hassleriana HOM05D000132 ORTHO05D000058 2.1e-06 57.0 88 40.9
Eucgr.A01344 Eucalyptus grandis HOM05D000132 ORTHO05D000058 2.8e-06 56.6 86 40.7
Eucgr.A01353 Eucalyptus grandis HOM05D000132 ORTHO05D000058 2.8e-06 56.6 91 42.9
QL09p041039 Quercus lobata HOM05D000132 ORTHO05D000058 2.8e-06 56.6 91 41.8
QL09p041090 Quercus lobata HOM05D000132 ORTHO05D000058 2.8e-06 56.6 89 43.8
GSVIVG01028401001 Vitis vinifera HOM05D000132 ORTHO05D000058 2.8e-06 56.6 84 42.9
CANSAT01G2531 Cannabis sativa HOM05D000132 ORTHO05D000058 3.6e-06 56.2 90 36.7
Cc01_g17940 Coffea canephora HOM05D000132 ORTHO05D000058 3.6e-06 56.2 86 40.7
CANSAT01G0397 Cannabis sativa HOM05D000132 ORTHO05D000058 4.7e-06 55.8 90 36.7
AUR62025459 Chenopodium quinoa HOM05D000132 ORTHO05D000058 4.7e-06 55.8 86 40.7
Lsat_1_v5_gn_5_183260 Lactuca sativa HOM05D000132 ORTHO05D000058 4.7e-06 55.8 88 40.9
Oeu064632.2 Olea europaea HOM05D000132 ORTHO05D000058 4.7e-06 55.8 82 43.9
DCAR_012604 Daucus carota HOM05D000132 ORTHO05D000058 6.2e-06 55.5 83 43.4
Aqoxy3G01177 Aquilegia oxysepala HOM05D000132 ORTHO05D000058 8.1e-06 55.1 79 38.0
AUR62008782 Chenopodium quinoa HOM05D000132 ORTHO05D000058 8.1e-06 55.1 83 37.3
PGSC0003DMG400003790 Solanum tuberosum HOM05D000132 ORTHO05D000058 8.1e-06 55.1 84 40.5


User provided reference genes

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