Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0286881 Rosa chinensis HOM05D007808 ORTHO05D009895 5.6e-264 913.7 452 100.0
FvH4_2g20710 Fragaria vesca HOM05D007808 ORTHO05D009895 1.7e-236 822.4 452 88.7
FAN27G2486 Fragaria x ananassa HOM05D007808 ORTHO05D009895 4.5e-221 771.2 429 87.9
FAN20G2653 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.1e-219 766.5 429 87.9
FAN24G0750 Fragaria x ananassa HOM05D007808 ORTHO05D009895 2.0e-213 745.7 410 89.0
FAN15G3261 Fragaria x ananassa HOM05D007808 ORTHO05D009895 8.9e-209 730.3 416 86.8
Prupe.8G216500 Prunus persica HOM05D007808 ORTHO05D009895 2.5e-187 659.1 447 72.3
QL09p041160 Quercus lobata HOM05D007808 ORTHO05D009895 1.9e-155 553.1 464 60.1
CANSAT01G0990 Cannabis sativa HOM05D007808 ORTHO05D009895 8.7e-148 527.7 461 57.7
Thecc.01G251900 Theobroma cacao HOM05D007808 ORTHO05D009895 3.3e-147 525.8 459 56.9
Duzib138G1393 Durio zibethinus HOM05D007808 ORTHO05D009895 1.4e-142 510.4 472 55.1
Manes.13G040600 Manihot esculenta HOM05D007808 ORTHO05D009895 1.9e-142 510.0 461 55.5
Hma1.2p1_0273F.1_g109280 Hydrangea macrophylla HOM05D007808 ORTHO05D009895 2.1e-141 506.5 460 54.6
Actinidia37545 Actinidia chinensis HOM05D007808 ORTHO05D009895 8.7e-140 501.1 461 55.1
Gohir.D07G157600 Gossypium hirsutum HOM05D007808 ORTHO05D009895 9.7e-139 497.7 459 54.7
COL.COLO4_10584 Corchorus olitorius HOM05D007808 ORTHO05D009895 3.1e-137 492.7 478 53.6
Lj2C1144T6 Lonicera japonica HOM05D007808 ORTHO05D009895 1.2e-136 490.7 456 53.9
Atru.chr5.1818 Acer truncatum HOM05D007808 ORTHO05D009895 2.0e-136 490.0 468 53.0
Gohir.A07G151000 Gossypium hirsutum HOM05D007808 ORTHO05D009895 8.5e-135 484.6 459 53.6
Potri.014G192200 Populus trichocarpa HOM05D007808 ORTHO05D009895 2.1e-133 479.9 468 53.2
TWI18G1304 Tripterygium wilfordii HOM05D007808 ORTHO05D009895 1.3e-127 460.7 476 52.1
GSVIVG01028406001 Vitis vinifera HOM05D007808 ORTHO05D009895 1.1e-126 457.6 435 52.6
Nn1g02938 Nelumbo nucifera HOM05D007808 ORTHO05D009895 2.5e-126 456.4 497 49.7
Ciclev10020041m.g Citrus clementina HOM05D007808 ORTHO05D009895 3.2e-126 456.1 464 50.4
Gorai.001G180500 Gossypium raimondii HOM05D007808 ORTHO05D009895 8.5e-119 431.4 480 49.6
TAR633G0330 Trochodendron aralioides HOM05D007808 ORTHO05D009895 1.4e-118 430.6 496 48.0
PGR031G1809 Punica granatum HOM05D007808 ORTHO05D009895 2.1e-117 426.8 453 48.6
Aqoxy5G00155 Aquilegia oxysepala HOM05D007808 ORTHO05D009895 4.4e-115 419.1 447 48.8
PSO832G1361 Papaver somniferum HOM05D007808 ORTHO05D009895 1.7e-114 417.2 450 47.3
HanXRQChr04g0111341 Helianthus annuus HOM05D007808 ORTHO05D009895 7.7e-112 408.3 461 45.8
CSS0017675 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 2.6e-107 393.3 381 53.5
CSS0046569 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 2.8e-106 389.8 370 55.1
AL8G16070 Arabidopsis lyrata HOM05D007808 ORTHO05D009895 3.8e-103 379.4 443 45.8
Migut.D00468 Erythranthe guttata HOM05D007808 ORTHO05D009895 8.5e-103 378.3 462 44.2
DCAR_018515 Daucus carota HOM05D007808 ORTHO05D009895 7.2e-102 375.2 446 44.6
THA.LOC104801132 Tarenaya hassleriana HOM05D007808 ORTHO05D009895 9.4e-102 374.8 448 46.0
AT5G44010 Arabidopsis thaliana HOM05D007808 ORTHO05D009895 4.7e-101 372.5 447 45.9
Cc01_g17900 Coffea canephora HOM05D007808 ORTHO05D009895 5.2e-100 369.0 445 44.3
BcaB07g30982 Brassica carinata HOM05D007808 ORTHO05D009895 8.8e-100 368.2 447 45.2
Sopen09g028660 Solanum pennellii HOM05D007808 ORTHO05D009895 1.2e-99 367.9 463 44.5
Carub.0008s0453 Capsella rubella HOM05D007808 ORTHO05D009895 5.7e-99 365.5 452 45.1
Solyc09g072860.2 Solanum lycopersicum HOM05D007808 ORTHO05D009895 5.7e-99 365.5 461 44.5
MBI10_g30718_MAGBIO Magnolia biondii HOM05D007808 ORTHO05D009895 3.7e-98 362.8 461 44.9
BraA09t37679Z Brassica rapa HOM05D007808 ORTHO05D009895 8.3e-98 361.7 443 44.5
A09p20750 Brassica napus HOM05D007808 ORTHO05D009895 2.4e-97 360.1 443 44.5
BcaC04g21876 Brassica carinata HOM05D007808 ORTHO05D009895 9.5e-94 348.2 443 43.3
C09p26260 Brassica napus HOM05D007808 ORTHO05D009895 9.5e-94 348.2 443 43.3
Oeu039657.1 Olea europaea HOM05D007808 ORTHO05D009895 1.0e-92 344.7 486 39.7
SalBow4G3111 Salvia bowleyana HOM05D007808 ORTHO05D009895 1.2e-91 341.3 437 42.8
Peaxi162Scf00415g00913 Petunia axillaris HOM05D007808 ORTHO05D009895 2.8e-90 336.7 439 42.6
Eucgr.A01321 Eucalyptus grandis HOM05D007808 ORTHO05D009895 2.5e-86 323.6 375 46.1
PSO764G0215 Papaver somniferum HOM05D007808 ORTHO05D009895 3.6e-85 319.7 446 39.5
Sc05g0003060 Simmondsia chinensis HOM05D007808 ORTHO05D009895 3.6e-85 319.7 398 43.7
Nitab4.5_0010039g0030 Nicotiana tabacum HOM05D007808 ORTHO05D009895 2.9e-82 310.1 446 40.4
ATR0736G152 Amborella trichopoda HOM05D007808 ORTHO05D009895 3.7e-82 309.7 470 41.5
Nitab4.5_0000845g0040 Nicotiana tabacum HOM05D007808 ORTHO05D009895 6.4e-82 308.9 446 39.5
CARHR179280 Cardamine hirsuta HOM05D007808 ORTHO05D009895 4.1e-81 306.2 397 44.3
Sabra14G0143900 Salix brachista HOM05D007808 ORTHO05D009895 1.6e-80 304.3 329 50.2
Thhalv10003421m.g Eutrema salsugineum HOM05D007808 ORTHO05D009895 6.0e-80 302.4 449 39.6
SGA_v2.0_scaffold1G00644 Striga asiatica HOM05D007808 ORTHO05D009895 6.6e-79 298.9 469 37.3
Lsat_1_v5_gn_8_92100 Lactuca sativa HOM05D007808 ORTHO05D009895 4.3e-78 296.2 409 41.8
Haze_24684 Corylus avellana HOM05D007808 ORTHO05D009895 7.0e-73 278.9 253 59.3
BolC9t55528H Brassica oleracea HOM05D007808 ORTHO05D009895 6.0e-72 275.8 392 41.1
HPP92_025831 Vanilla planifolia HOM05D007808 ORTHO05D009895 2.3e-71 273.9 461 36.2
CiPaw.04G189500 Carya illinoinensis HOM05D007808 ORTHO05D009895 8.1e-69 265.4 218 56.4
BcaC04g21877 Brassica carinata HOM05D007808 ORTHO05D009895 1.5e-67 261.2 384 39.6
Os02g0814600 Oryza sativa ssp. japonica HOM05D007808 ORTHO05D009895 2.2e-66 257.3 461 33.6
CAN.G1395.2 Capsicum annuum HOM05D007808 ORTHO05D009895 7.1e-65 252.3 303 47.9
Zm00001eb191560 Zea mays HOM05D007808 ORTHO05D009895 1.8e-60 237.7 451 32.2
Cpa.g.sc87.15 Carica papaya HOM05D007808 ORTHO05D009895 8.9e-60 235.3 244 54.1
Gorai.002G091900 Gossypium raimondii HOM05D007808 ORTHO05D009895 4.2e-49 199.9 233 48.1
ECA236G2323 Erigeron canadensis HOM05D000728 ORTHO05D001586 1.2e-40 171.8 245 40.0
CDE02G3651 Ceratophyllum demersum HOM05D007808 ORTHO05D009895 1.0e-39 168.7 283 35.0
Sp2g08850 Schrenkiella parvula HOM05D007808 ORTHO05D009895 3.3e-30 137.1 396 29.5
CiPaw.04G189400 Carya illinoinensis HOM05D007808 ORTHO05D009895 3.1e-28 130.6 89 69.7
Gohir.D11G218200 Gossypium hirsutum HOM05D007808 ORTHO05D009895 4.6e-24 116.7 148 42.6
FAN27G0174 Fragaria x ananassa HOM05D007808 ORTHO05D009895 8.2e-21 105.9 66 72.7
SEGI_27571 Sequoiadendron giganteum HOM05D007808 ORTHO05D009895 4.5e-19 100.1 246 28.0
Pp3c1_42330 Physcomitrium patens HOM05D007808 ORTHO05D009895 1.7e-18 98.2 452 22.8
AagrBONN_evm.TU.Sc2ySwM_117.2846 Anthoceros agrestis HOM05D007808 ORTHO05D009895 1.2e-16 92.0 414 22.0
PGSC0003DMG400003825 Solanum tuberosum HOM05D007808 ORTHO05D009895 1.8e-15 88.2 60 61.7
CANSAT56G3388 Cannabis sativa HOM05D007808 ORTHO05D009895 2.6e-11 74.3 51 60.8
C07p26600 Brassica napus HOM05D007808 ORTHO05D009895 3.3e-06 57.4 108 35.2
BraA06t27623Z Brassica rapa HOM05D007808 ORTHO05D009895 5.7e-06 56.6 112 34.8


User provided reference genes

Program Settings