Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 2.7e-152 542.3 357 100.0
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 1.7e-117 426.8 364 80.5
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 2.7e-112 409.5 362 79.3
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 2.7e-112 409.5 362 79.3
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 1.3e-106 390.6 362 76.5
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 2.4e-68 263.5 281 59.8
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 2.1e-64 250.4 285 55.4
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 3.9e-42 176.4 283 46.3
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 6.6e-42 175.6 288 49.0
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 3.1e-39 166.8 301 44.5
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 9.0e-39 165.2 299 41.8
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 1.5e-38 164.5 288 47.9
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 6.4e-37 159.1 285 42.5
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 4.2e-36 156.4 297 44.4
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 7.9e-35 152.1 303 41.3
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 1.3e-34 151.4 300 44.0
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 3.0e-34 150.2 287 42.5
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 6.7e-34 149.1 286 42.0
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 8.7e-34 148.7 276 44.2
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 9.6e-33 145.2 279 40.9
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 1.6e-32 144.4 283 42.0
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 1.6e-32 144.4 305 39.7
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 1.1e-31 141.7 281 39.5
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 6.9e-31 139.0 283 39.9
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 1.2e-30 138.3 276 38.8
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 1.2e-30 138.3 285 42.1
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 2.0e-30 137.5 298 41.9
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 2.0e-30 137.5 289 41.9
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 4.5e-30 136.3 303 38.3
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 4.5e-30 136.3 283 42.4
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 7.6e-30 135.6 280 40.4
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 7.6e-30 135.6 310 39.0
CiPaw.03G270700 Carya illinoinensis HOM05D007706 ORTHO05D009593 2.2e-29 134.0 277 39.7
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 1.1e-28 131.7 240 40.8
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 1.1e-28 131.7 247 40.9
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 1.1e-28 131.7 290 40.3
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 1.4e-28 131.3 286 41.3
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 2.4e-28 130.6 287 39.0
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 3.2e-28 130.2 281 37.0
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 7.1e-28 129.0 294 37.8
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 9.3e-28 128.6 307 37.5
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 1.0e-26 125.2 274 39.4
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 1.3e-26 124.8 282 40.1
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 2.3e-26 124.0 298 37.6
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 3.9e-26 123.2 285 39.3
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 5.1e-26 122.9 297 38.4
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 5.1e-26 122.9 303 38.0
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 1.1e-25 121.7 295 40.7
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 1.5e-25 121.3 286 36.7
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 1.5e-25 121.3 274 38.3
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 3.3e-25 120.2 285 39.3
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 3.3e-25 120.2 289 40.5
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 7.4e-25 119.0 299 37.8
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 7.4e-25 119.0 298 37.6
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 4.8e-24 116.3 307 39.4
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 6.2e-24 115.9 289 37.4
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 6.2e-24 115.9 298 37.2
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 8.2e-24 115.5 297 37.4
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 1.1e-23 115.2 285 35.8
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 1.1e-23 115.2 291 39.2
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 2.4e-23 114.0 308 39.9
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 2.0e-22 110.9 303 38.0
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 2.6e-22 110.5 279 37.6
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 1.7e-21 107.8 294 38.4
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 1.9e-20 104.4 279 34.1
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 3.2e-20 103.6 267 36.3
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 4.2e-20 103.2 287 36.9
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 2.1e-19 100.9 276 37.3
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 2.1e-19 100.9 275 36.7
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 3.5e-19 100.1 297 35.0
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 7.9e-19 99.0 284 37.0
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 2.3e-18 97.4 281 35.2
CsaV3_6G007370 Cucumis sativus L. HOM05D007706 ORTHO05D009593 3.0e-18 97.1 283 35.0
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 3.9e-18 96.7 285 37.5
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 3.3e-17 93.6 288 34.7
Migut.N02230 Erythranthe guttata HOM05D007706 ORTHO05D009593 9.7e-17 92.0 282 32.3
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 3.7e-16 90.1 290 35.5
MELO3C022390.2 Cucumis melo HOM05D007706 ORTHO05D009593 6.3e-16 89.4 284 33.8
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 1.2e-14 85.1 284 34.2
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 2.6e-14 84.0 288 31.2
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 1.3e-13 81.6 272 30.5
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 2.2e-13 80.9 294 34.0
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 2.9e-13 80.5 287 37.3
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 2.5e-12 77.4 289 32.5
ClCG06G001430 Citrullus lanatus HOM05D007706 ORTHO05D009593 5.5e-12 76.3 283 31.1
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 5.5e-12 76.3 203 36.9
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 5.5e-12 76.3 301 31.2
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 5.5e-12 76.3 180 36.7
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 1.6e-11 74.7 290 32.1
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 1.6e-11 74.7 226 36.7
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 2.7e-11 73.9 277 32.1
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 3.6e-11 73.6 316 29.1
Nitab4.5_0000845g0230 Nicotiana tabacum HOM05D007706 ORTHO05D009593 4.6e-11 73.2 86 44.2
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.8e-10 71.2 285 32.6
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.5e-09 68.2 123 35.8
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.5e-09 68.2 96 40.6
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 1.9e-09 67.8 297 31.6
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 1.9e-09 67.8 280 31.1
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 3.3e-09 67.0 282 33.3
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 1.3e-08 65.1 326 32.2
COL.COLO4_10568 Corchorus olitorius HOM05D007706 ORTHO05D009593 2.2e-08 64.3 47 63.8
Os03g0140700 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 3.7e-08 63.5 287 33.1
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 6.3e-08 62.8 310 29.7
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 6.3e-08 62.8 85 43.5
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 6.3e-08 62.8 270 31.1
Sed0022884 Sechium edule HOM05D007706 ORTHO05D009593 1.4e-07 61.6 207 33.3
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.8e-07 61.2 77 45.5
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 3.1e-07 60.5 293 28.3
Nn2g12060 Nelumbo nucifera HOM05D001903 ORTHO05D001847 4.1e-07 60.1 274 28.5
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 5.3e-07 59.7 90 42.2
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 1.2e-06 58.5 43 65.1
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 1.2e-06 58.5 111 34.2
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 1.2e-06 58.5 138 35.5
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 1.5e-06 58.2 299 28.4
Lalb_Chr01g0019491 Lupinus albus HOM05D007706 ORTHO05D009593 2.0e-06 57.8 82 41.5
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 2.6e-06 57.4 80 43.8
Thhalv10014275m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 3.4e-06 57.0 67 40.3
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 4.5e-06 56.6 48 56.2
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 4.5e-06 56.6 38 60.5
SalBow7G0697 Salvia bowleyana HOM05D007706 ORTHO05D009593 7.7e-06 55.8 275 28.0


User provided reference genes

Program Settings