Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0286561 Rosa chinensis HOM05D006027 ORTHO05D007604 6.7e-51 203.8 105 100.0
FAN27G2528 Fragaria x ananassa HOM05D006027 ORTHO05D007604 9.0e-48 193.4 103 95.1
FvH4_2g20470 Fragaria vesca HOM05D006027 ORTHO05D007604 3.4e-47 191.4 103 96.1
FAN24G3422 Fragaria x ananassa HOM05D006027 ORTHO05D007604 3.4e-47 191.4 103 96.1
FAN15G2830 Fragaria x ananassa HOM05D006027 ORTHO05D007604 8.5e-46 186.8 103 91.3
Prupe.8G215000 Prunus persica HOM05D006027 ORTHO05D007604 7.4e-42 173.7 103 85.4
MD10G1176000 Malus domestica HOM05D006027 ORTHO05D007604 4.8e-41 171.0 103 85.4
MD05G1188500 Malus domestica HOM05D006027 ORTHO05D007604 3.1e-40 168.3 103 83.5
TAR633G0397 Trochodendron aralioides HOM05D006027 ORTHO05D007604 1.2e-31 139.8 104 72.1
GSVIVG01028434001 Vitis vinifera HOM05D006027 ORTHO05D007604 1.3e-30 136.3 103 69.9
CANSAT01G0515 Cannabis sativa HOM05D006027 ORTHO05D007604 1.6e-28 129.4 105 64.8
PSO764G0320 Papaver somniferum HOM05D006027 ORTHO05D007604 1.6e-28 129.4 106 68.9
PSO832G0858 Papaver somniferum HOM05D006027 ORTHO05D007604 3.6e-28 128.3 105 68.6
TAR362G0914 Trochodendron aralioides HOM05D006027 ORTHO05D007604 8.0e-28 127.1 104 67.3
Manes.12G038000 Manihot esculenta HOM05D006027 ORTHO05D007604 1.0e-27 126.7 102 69.6
Thecc.01G249800 Theobroma cacao HOM05D006027 ORTHO05D007604 1.0e-27 126.7 104 69.2
CSS0012566 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 2.3e-27 125.6 103 65.0
Haze_24710 Corylus avellana HOM05D006027 ORTHO05D007604 2.3e-27 125.6 108 65.7
CSS0010160 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 6.7e-27 124.0 103 64.1
Manes.13G039500 Manihot esculenta HOM05D006027 ORTHO05D007604 6.7e-27 124.0 103 68.0
Gohir.A07G152700 Gossypium hirsutum HOM05D006027 ORTHO05D007604 8.8e-27 123.6 104 66.3
CiPaw.03G271300 Carya illinoinensis HOM05D006027 ORTHO05D007604 1.1e-26 123.2 99 69.7
Dinv43066 Davidia involucrata HOM05D006027 ORTHO05D007604 1.1e-26 123.2 103 62.1
CANSAT01G2333 Cannabis sativa HOM05D006027 ORTHO05D007604 2.6e-26 122.1 105 63.8
Gorai.001G182100 Gossypium raimondii HOM05D006027 ORTHO05D007604 3.3e-26 121.7 104 65.4
Gohir.D07G158900 Gossypium hirsutum HOM05D006027 ORTHO05D007604 5.7e-26 120.9 104 65.4
QL09p041558 Quercus lobata HOM05D006027 ORTHO05D007604 1.3e-25 119.8 104 66.3
Aqoxy5G00130 Aquilegia oxysepala HOM05D006027 ORTHO05D007604 1.7e-25 119.4 105 63.8
Duzib138G0534 Durio zibethinus HOM05D006027 ORTHO05D007604 1.7e-25 119.4 105 67.6
Nn3g19801 Nelumbo nucifera HOM05D006027 ORTHO05D007604 2.2e-25 119.0 103 66.0
Duzib211G0648 Durio zibethinus HOM05D006027 ORTHO05D007604 3.7e-25 118.2 104 64.4
Eucgr.K01424 Eucalyptus grandis HOM05D006027 ORTHO05D007604 1.1e-24 116.7 104 62.5
Atru.chr5.1865 Acer truncatum HOM05D006027 ORTHO05D007604 3.1e-24 115.2 103 61.2
TWI18G0031 Tripterygium wilfordii HOM05D006027 ORTHO05D007604 4.1e-24 114.8 102 63.7
DCAR_000568 Daucus carota HOM05D006027 ORTHO05D007604 4.5e-23 111.3 103 62.1
PGR044G2038 Punica granatum HOM05D006027 ORTHO05D007604 5.9e-23 110.9 104 60.6
Ciclev10022322m.g Citrus clementina HOM05D006027 ORTHO05D007604 1.0e-22 110.2 105 59.0
PGSC0003DMG400008585 Solanum tuberosum HOM05D006027 ORTHO05D007604 1.7e-22 109.4 103 61.2
Nitab4.5_0000845g0140 Nicotiana tabacum HOM05D006027 ORTHO05D007604 2.2e-22 109.0 103 60.2
Potri.002G256400 Populus trichocarpa HOM05D006027 ORTHO05D007604 2.2e-22 109.0 103 60.2
Sopen09g025650 Solanum pennellii HOM05D006027 ORTHO05D007604 2.9e-22 108.6 103 60.2
Nitab4.5_0002435g0010 Nicotiana tabacum HOM05D006027 ORTHO05D007604 5.0e-22 107.8 103 59.2
Actinidia23700 Actinidia chinensis HOM05D006027 ORTHO05D007604 6.5e-22 107.5 102 60.8
vmacro14793 Vaccinium macrocarpon HOM05D006027 ORTHO05D007604 6.5e-22 107.5 103 63.1
Cfa002488 Carpinus fangiana HOM05D006027 ORTHO05D007604 8.5e-22 107.1 89 64.0
Solyc09g064500.3 Solanum lycopersicum HOM05D006027 ORTHO05D007604 8.5e-22 107.1 103 59.2
Sabra02G0194900 Salix brachista HOM05D006027 ORTHO05D007604 1.5e-21 106.3 102 56.9
Actinidia09513 Actinidia chinensis HOM05D006027 ORTHO05D007604 1.9e-21 105.9 102 59.8
Glyma.10G040600 Glycine max HOM05D006027 ORTHO05D007604 4.2e-21 104.8 102 60.8
CAN.G536.12 Capsicum annuum HOM05D006027 ORTHO05D007604 9.4e-21 103.6 103 58.3
SGA_v2.0_scaffold1G00660 Striga asiatica HOM05D006027 ORTHO05D007604 2.1e-20 102.4 107 57.9
Migut.D00479 Erythranthe guttata HOM05D006027 ORTHO05D007604 2.7e-20 102.1 104 59.6
Phvul.007G153500 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 3.6e-20 101.7 102 60.8
Glyma.13G127200 Glycine max HOM05D006027 ORTHO05D007604 6.1e-20 100.9 102 58.8
Lalb_Chr06g0170731 Lupinus albus HOM05D006027 ORTHO05D007604 6.1e-20 100.9 103 60.2
VMungo0720G1620 Vigna mungo HOM05D006027 ORTHO05D007604 8.0e-20 100.5 102 59.8
AUR62025437 Chenopodium quinoa HOM05D006027 ORTHO05D007604 5.7e-18 94.4 106 53.8
Cc01_g17770 Coffea canephora HOM05D006027 ORTHO05D007604 5.7e-18 94.4 104 58.7
Lalb_Chr02g0152741 Lupinus albus HOM05D006027 ORTHO05D007604 5.7e-18 94.4 104 56.7
MBI07_g08912_MAGBIO Magnolia biondii HOM05D006027 ORTHO05D007604 5.7e-18 94.4 104 54.8
CDE02G4364 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 1.3e-17 93.2 103 55.3
MELO3C022393.2 Cucumis melo HOM05D006027 ORTHO05D007604 1.3e-17 93.2 105 52.4
Hund18287 Selenicereus undatus HOM05D006027 ORTHO05D007604 2.2e-17 92.4 102 51.0
Lj5g0017558 Lotus japonicus HOM05D006027 ORTHO05D007604 3.7e-17 91.7 103 53.4
Lsat_1_v5_gn_5_181161 Lactuca sativa HOM05D006027 ORTHO05D007604 4.8e-17 91.3 104 51.0
Rhsim01G0260300 Rhododendron simsii HOM05D006027 ORTHO05D007604 4.8e-17 91.3 72 63.9
arahy.Tifrunner.gnm1.ann1.72UZ71 Arachis hypogaea HOM05D006027 ORTHO05D007604 6.3e-17 90.9 103 55.3
arahy.Tifrunner.gnm1.ann1.FRV526 Arachis hypogaea HOM05D006027 ORTHO05D007604 6.3e-17 90.9 103 55.3
CDE09G0356 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 8.3e-17 90.5 103 55.3
Lj1C74G4 Lonicera japonica HOM05D006027 ORTHO05D007604 1.1e-16 90.1 79 62.0
HanXRQChr01g0014971 Helianthus annuus HOM05D006027 ORTHO05D007604 2.4e-16 89.0 105 52.4
Medtr1g069465 Medicago truncatula HOM05D006027 ORTHO05D007604 2.4e-16 89.0 106 53.8
ClCG06G001400 Citrullus lanatus HOM05D006027 ORTHO05D007604 4.1e-16 88.2 107 50.5
Oeu015437.1 Olea europaea HOM05D006027 ORTHO05D007604 4.1e-16 88.2 78 61.5
Os01g0938100 Oryza sativa ssp. japonica HOM05D006027 ORTHO05D007604 5.4e-16 87.8 102 52.0
VMungo1383G1953 Vigna mungo HOM05D006027 ORTHO05D007604 5.4e-16 87.8 102 52.0
Ca_09646_v3 Cicer arietinum L. HOM05D006027 ORTHO05D007604 2.0e-15 85.9 105 54.3
TPR.G5919 Trifolium pratense HOM05D006027 ORTHO05D007604 2.7e-15 85.5 106 54.7
EL10Ac7g17691 Beta vulgaris HOM05D006027 ORTHO05D007604 4.5e-15 84.7 122 45.1
Phvul.001G165200 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 5.9e-15 84.3 102 51.0
HPP92_027289 Vanilla planifolia HOM05D006027 ORTHO05D007604 5.9e-15 84.3 72 55.6
HPP92_008468 Vanilla planifolia HOM05D006027 ORTHO05D007604 2.9e-14 82.0 98 45.9
Sc05g0002880 Simmondsia chinensis HOM05D006027 ORTHO05D007604 5.0e-14 81.3 103 50.5
Psat6g062520 Pisum sativum HOM05D006027 ORTHO05D007604 6.5e-14 80.9 106 50.9
Oeu052083.1 Olea europaea HOM05D006027 ORTHO05D007604 7.2e-13 77.4 69 63.8
Aa31LG2G21720 Aethionema arabicum HOM05D006027 ORTHO05D007604 4.7e-12 74.7 105 45.7
Sed0007731 Sechium edule HOM05D006027 ORTHO05D007604 4.7e-12 74.7 69 56.5
THA.LOC104814531 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 4.7e-12 74.7 99 47.5
AUR62008802 Chenopodium quinoa HOM05D006027 ORTHO05D007604 6.1e-12 74.3 53 69.8
TAR362G0025 Trochodendron aralioides HOM05D006027 ORTHO05D007604 1.0e-11 73.6 49 73.5
BraA01t00872Z Brassica rapa HOM05D006027 ORTHO05D007604 2.3e-11 72.4 79 49.4
BolC1t01050H Brassica oleracea HOM05D000022 ORTHO05D000744 3.0e-11 72.0 79 48.1
BcaC06g32609 Brassica carinata HOM05D006027 ORTHO05D007604 4.0e-11 71.6 77 51.9
A01p09280 Brassica napus HOM05D006027 ORTHO05D007604 8.8e-11 70.5 79 48.1
ECA248G3782 Erigeron canadensis HOM05D006027 ORTHO05D007604 8.8e-11 70.5 77 50.6
Cpa.g.sc87.33 Carica papaya HOM05D006027 ORTHO05D007604 1.2e-10 70.1 36 88.9
Zm00001eb141870 Zea mays HOM05D006027 ORTHO05D007604 1.2e-10 70.1 103 43.7
Peaxi162Scf00043g00255 Petunia axillaris HOM05D006027 ORTHO05D007604 2.0e-10 69.3 37 83.8
COL.COLO4_10205 Corchorus olitorius HOM05D006027 ORTHO05D007604 2.6e-10 68.9 37 86.5
unitig_8.g3074 Utricularia gibba HOM05D006027 ORTHO05D007604 2.6e-10 68.9 71 54.9
Thhalv10026347m.g Eutrema salsugineum HOM05D006027 ORTHO05D007604 4.4e-10 68.2 105 41.9
A03p58340 Brassica napus HOM05D006027 ORTHO05D007604 5.7e-10 67.8 101 42.6
SalBow4G0311 Salvia bowleyana HOM05D006027 ORTHO05D007604 5.7e-10 67.8 36 86.1
CARHR236440 Cardamine hirsuta HOM05D006027 ORTHO05D007604 7.5e-10 67.4 83 47.0
Zm00001eb141830 Zea mays HOM05D006027 ORTHO05D007604 9.8e-10 67.0 75 53.3
BcaNung04696 Brassica carinata HOM05D006027 ORTHO05D007604 1.3e-09 66.6 79 49.4
C01p10860 Brassica napus HOM05D006027 ORTHO05D007604 1.3e-09 66.6 78 46.2
C07p56360 Brassica napus HOM05D006027 ORTHO05D007604 1.3e-09 66.6 76 47.4
BolC7t46115H Brassica oleracea HOM05D006027 ORTHO05D007604 1.3e-09 66.6 76 47.4
ATR0787G157 Amborella trichopoda HOM05D006027 ORTHO05D007604 1.7e-09 66.2 35 85.7
AT4G28660 Arabidopsis thaliana HOM05D006027 ORTHO05D007604 2.2e-09 65.9 84 47.6
Sp7g26630 Schrenkiella parvula HOM05D006027 ORTHO05D007604 2.2e-09 65.9 105 42.9
Ah.15g092630 Amaranthus hybridus HOM05D006027 ORTHO05D007604 2.8e-09 65.5 53 62.3
THA.LOC104820068 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 6.3e-09 64.3 102 47.1
AL7G23880 Arabidopsis lyrata HOM05D006027 ORTHO05D007604 8.3e-09 63.9 105 41.9
Carub.0007s1200 Capsella rubella HOM05D006027 ORTHO05D007604 8.3e-09 63.9 74 45.9
Zm00001eb141760 Zea mays HOM05D006027 ORTHO05D007604 1.4e-08 63.2 33 87.9
Mapoly0042s0085 Marchantia polymorpha HOM05D006027 ORTHO05D007604 3.1e-08 62.0 72 45.8
Pp3c11_18280 Physcomitrium patens HOM05D006027 ORTHO05D007604 7.7e-07 57.4 69 44.9
CSS0017427 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 3.8e-06 55.1 86 41.9


User provided reference genes

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