Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0286141 Rosa chinensis HOM05D003510 ORTHO05D004144 5.3e-75 284.3 142 100.0
RcHm_v2.0_Chr6g0286191 Rosa chinensis HOM05D003510 ORTHO05D004144 1.9e-69 265.8 141 95.0
RcHm_v2.0_Chr6g0286261 Rosa chinensis HOM05D003510 ORTHO05D004144 1.9e-69 265.8 141 95.0
FAN12G2466 Fragaria x ananassa HOM05D003510 ORTHO05D004144 1.1e-56 223.4 140 79.3
RcHm_v2.0_Chr6g0286301 Rosa chinensis HOM05D003510 ORTHO05D004144 5.5e-56 221.1 137 80.3
FAN12G0948 Fragaria x ananassa HOM05D003510 ORTHO05D004144 9.3e-56 220.3 139 78.4
FAN17G2584 Fragaria x ananassa HOM05D003510 ORTHO05D004144 2.7e-55 218.8 140 78.6
RcHm_v2.0_Chr4g0434951 Rosa chinensis HOM05D003510 ORTHO05D004144 1.3e-54 216.5 141 76.6
RcHm_v2.0_Chr6g0286321 Rosa chinensis HOM05D003510 ORTHO05D004144 1.8e-54 216.1 136 79.4
RcHm_v2.0_Chr6g0286291 Rosa chinensis HOM05D003510 ORTHO05D004144 7.4e-53 210.7 137 77.4
FAN12G3824 Fragaria x ananassa HOM05D003510 ORTHO05D004144 2.2e-52 209.1 166 66.9
FvH4_4g27160 Fragaria vesca HOM05D003510 ORTHO05D004144 1.8e-51 206.1 166 65.7
RcHm_v2.0_Chr4g0434941 Rosa chinensis HOM05D003510 ORTHO05D004144 1.2e-50 203.4 142 71.1
Prupe.1G313100 Prunus persica HOM05D003510 ORTHO05D004144 7.7e-50 200.7 140 71.4
Atru.chr11.132 Acer truncatum HOM05D003510 ORTHO05D004144 6.5e-49 197.6 140 67.9
FAN12G1645 Fragaria x ananassa HOM05D003510 ORTHO05D004144 6.5e-49 197.6 126 77.0
Eucgr.B03007 Eucalyptus grandis HOM05D003510 ORTHO05D004144 1.4e-48 196.4 142 67.6
TWI75G1742 Tripterygium wilfordii HOM05D003510 ORTHO05D004144 1.4e-48 196.4 142 66.2
FAN22G0292 Fragaria x ananassa HOM05D003510 ORTHO05D004144 1.9e-48 196.1 140 72.9
Hma1.2p1_0061F.1_g033710 Hydrangea macrophylla HOM05D003510 ORTHO05D004144 1.9e-48 196.1 140 67.9
CSS0018626 Camellia sinensis var. sinensis HOM05D003510 ORTHO05D004144 2.5e-48 195.7 142 67.6
CiPaw.05G239200 Carya illinoinensis HOM05D003510 ORTHO05D004144 3.2e-48 195.3 142 66.2
MD16G1041000 Malus domestica HOM05D003510 ORTHO05D004144 3.2e-48 195.3 142 69.0
TAR371G0378 Trochodendron aralioides HOM05D003510 ORTHO05D004144 4.2e-48 194.9 140 65.7
GSVIVG01011878001 Vitis vinifera HOM05D003510 ORTHO05D004144 9.4e-48 193.7 140 67.1
QL01p040948 Quercus lobata HOM05D003510 ORTHO05D004144 1.6e-47 193.0 141 65.2
Sc11g0003500 Simmondsia chinensis HOM05D003510 ORTHO05D004144 1.6e-47 193.0 137 66.4
EL10Ac6g14376 Beta vulgaris HOM05D003510 ORTHO05D004144 2.1e-47 192.6 142 65.5
Rhsim09G0106600 Rhododendron simsii HOM05D003510 ORTHO05D004144 2.1e-47 192.6 139 66.2
Lalb_Chr04g0254661 Lupinus albus HOM05D003510 ORTHO05D004144 2.7e-47 192.2 140 64.3
Thecc.02G226300 Theobroma cacao HOM05D003510 ORTHO05D004144 3.6e-47 191.8 142 65.5
Lj3A1013T42 Lonicera japonica HOM05D003510 ORTHO05D004144 6.1e-47 191.0 142 66.2
PGR102G3338 Punica granatum HOM05D003510 ORTHO05D004144 7.9e-47 190.7 140 65.7
Cc11_g09950 Coffea canephora HOM05D003510 ORTHO05D004144 1.0e-46 190.3 142 65.5
Manes.14G104000 Manihot esculenta HOM05D003510 ORTHO05D004144 1.8e-46 189.5 138 67.4
Medtr5g056390 Medicago truncatula HOM05D003510 ORTHO05D004144 3.9e-46 188.3 140 61.4
unitig_27.g25253 Utricularia gibba HOM05D003510 ORTHO05D004144 3.9e-46 188.3 141 65.2
VMungo1215G1668 Vigna mungo HOM05D003510 ORTHO05D004144 5.1e-46 188.0 140 62.9
Phvul.003G030100 Phaseolus vulgaris HOM05D003510 ORTHO05D004144 6.7e-46 187.6 140 62.9
vmacro10567 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 6.7e-46 187.6 148 63.5
Glyma.01G080400 Glycine max HOM05D003510 ORTHO05D004144 8.8e-46 187.2 140 62.1
Ah.02g127620 Amaranthus hybridus HOM05D003510 ORTHO05D004144 1.1e-45 186.8 142 62.0
FvH4_4g27130 Fragaria vesca HOM05D003510 ORTHO05D004144 1.1e-45 186.8 126 72.2
TPR.G27953 Trifolium pratense HOM05D003510 ORTHO05D004144 1.1e-45 186.8 140 60.0
Aqoxy3G03956 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 2.0e-45 186.0 142 64.1
arahy.Tifrunner.gnm1.ann1.VLLQ8N Arachis hypogaea HOM05D003510 ORTHO05D004144 2.0e-45 186.0 140 63.6
DCAR_023651 Daucus carota HOM05D003510 ORTHO05D004144 2.6e-45 185.7 142 63.4
BcaB03g15105 Brassica carinata HOM05D003510 ORTHO05D004144 3.3e-45 185.3 141 58.9
Duzib248G1132 Durio zibethinus HOM05D003510 ORTHO05D004144 3.3e-45 185.3 142 63.4
Migut.E00355 Erythranthe guttata HOM05D003510 ORTHO05D004144 3.3e-45 185.3 142 60.6
GSVIVG01011876001 Vitis vinifera HOM05D003510 ORTHO05D004144 3.3e-45 185.3 140 65.7
Peaxi162Scf00564g00029 Petunia axillaris HOM05D003510 ORTHO05D004144 5.7e-45 184.5 138 62.3
CANSAT01G1441 Cannabis sativa HOM05D003510 ORTHO05D004144 7.4e-45 184.1 140 63.6
Gohir.D04G137800 Gossypium hirsutum HOM05D003510 ORTHO05D004144 9.7e-45 183.7 142 63.4
Gorai.012G122200 Gossypium raimondii HOM05D003510 ORTHO05D004144 9.7e-45 183.7 142 63.4
Cpa.g.sc65.43 Carica papaya HOM05D003510 ORTHO05D004144 1.3e-44 183.3 132 65.9
THA.LOC104808154 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 1.3e-44 183.3 142 61.3
Carub.0002s1476 Capsella rubella HOM05D003510 ORTHO05D004144 1.7e-44 183.0 140 60.0
COL.COLO4_04883 Corchorus olitorius HOM05D003510 ORTHO05D004144 4.8e-44 181.4 156 57.7
Psat2g082000 Pisum sativum HOM05D003510 ORTHO05D004144 4.8e-44 181.4 140 58.6
Potri.010G123102 Populus trichocarpa HOM05D003510 ORTHO05D004144 8.2e-44 180.6 154 59.7
Lalb_Chr04g0254671 Lupinus albus HOM05D003510 ORTHO05D004144 1.1e-43 180.3 139 62.6
Solyc04g007260.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 1.1e-43 180.3 142 60.6
Sopen04g002320 Solanum pennellii HOM05D003510 ORTHO05D004144 1.1e-43 180.3 142 60.6
Ca_10364_v3 Cicer arietinum L. HOM05D003510 ORTHO05D004144 1.4e-43 179.9 139 59.7
BraA07t31088Z Brassica rapa HOM05D003510 ORTHO05D004144 1.8e-43 179.5 140 58.6
MELO3C012260.2 Cucumis melo HOM05D003510 ORTHO05D004144 1.8e-43 179.5 139 61.9
CsaV3_5G034440 Cucumis sativus L. HOM05D003510 ORTHO05D004144 1.8e-43 179.5 141 61.0
Sp5g23330 Schrenkiella parvula HOM05D003510 ORTHO05D004144 1.8e-43 179.5 136 61.0
PGSC0003DMG400005981 Solanum tuberosum HOM05D003510 ORTHO05D004144 2.4e-43 179.1 142 60.6
HanXRQChr16g0529461 Helianthus annuus HOM05D003510 ORTHO05D004144 4.1e-43 178.3 137 60.6
ECA234G2589 Erigeron canadensis HOM05D003510 ORTHO05D004144 5.3e-43 177.9 142 60.6
Thhalv10019154m.g Eutrema salsugineum HOM05D003510 ORTHO05D004144 5.3e-43 177.9 141 58.9
CARHR060960 Cardamine hirsuta HOM05D003510 ORTHO05D004144 6.9e-43 177.6 140 59.3
Lsat_1_v5_gn_4_15820 Lactuca sativa HOM05D003510 ORTHO05D004144 6.9e-43 177.6 142 56.3
Lj7P525T18 Lonicera japonica HOM05D003510 ORTHO05D004144 6.9e-43 177.6 134 62.7
Ciclev10016740m.g Citrus clementina HOM05D003510 ORTHO05D004144 1.2e-42 176.8 139 61.2
PSO063G2460 Papaver somniferum HOM05D003510 ORTHO05D004144 2.0e-42 176.0 139 59.7
AT1G68260 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 2.6e-42 175.6 140 57.9
vmacro10568 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 2.6e-42 175.6 134 61.2
AL2G27110 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 7.7e-42 174.1 140 57.9
BcaC08g46259 Brassica carinata HOM05D003510 ORTHO05D004144 7.7e-42 174.1 140 55.7
C06p41720 Brassica napus HOM05D003510 ORTHO05D004144 7.7e-42 174.1 140 55.7
CAN.G1052.1 Capsicum annuum HOM05D003510 ORTHO05D004144 7.7e-42 174.1 142 60.6
Hund25056 Selenicereus undatus HOM05D003510 ORTHO05D004144 7.7e-42 174.1 132 64.4
ATR1125G078 Amborella trichopoda HOM05D003510 ORTHO05D004144 1.3e-41 173.3 140 59.3
Nitab4.5_0000057g0210 Nicotiana tabacum HOM05D003510 ORTHO05D004144 1.3e-41 173.3 142 61.3
Lj2g0023320 Lotus japonicus HOM05D003510 ORTHO05D004144 1.7e-41 172.9 133 60.2
Nitab4.5_0007398g0020 Nicotiana tabacum HOM05D003510 ORTHO05D004144 1.7e-41 172.9 142 59.9
Solyc04g007200.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 6.5e-41 171.0 138 58.7
PGSC0003DMG402015879 Solanum tuberosum HOM05D003510 ORTHO05D004144 8.5e-41 170.6 134 59.0
AT1G68280 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 1.4e-40 169.9 140 56.4
AUR62034133 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.9e-40 169.5 140 59.3
AUR62034134 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.9e-40 169.5 140 59.3
AUR62044553 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.9e-40 169.5 140 59.3
AUR62044554 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.9e-40 169.5 140 59.3
Sopen04g002260 Solanum pennellii HOM05D003510 ORTHO05D004144 1.9e-40 169.5 138 58.0
PGSC0003DMG400007750 Solanum tuberosum HOM05D003510 ORTHO05D004144 1.9e-40 169.5 139 58.3
THA.LOC104815461 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 2.5e-40 169.1 134 57.5
HPP92_015110 Vanilla planifolia HOM05D003510 ORTHO05D004144 2.5e-40 169.1 134 62.7
HPP92_015116 Vanilla planifolia HOM05D003510 ORTHO05D004144 2.5e-40 169.1 134 62.7
Carub.0001s3288 Capsella rubella HOM05D003510 ORTHO05D004144 4.2e-40 168.3 141 55.3
Sabra10G0093200 Salix brachista HOM05D003510 ORTHO05D004144 5.5e-40 167.9 180 50.6
CARHR286260 Cardamine hirsuta HOM05D003510 ORTHO05D004144 1.2e-39 166.8 136 56.6
Cpa.g.sc65.42 Carica papaya HOM05D003510 ORTHO05D004144 1.2e-39 166.8 137 56.2
HanXRQChr10g0288901 Helianthus annuus HOM05D003510 ORTHO05D004144 1.2e-39 166.8 137 57.7
HanXRQChr03g0078631 Helianthus annuus HOM05D003510 ORTHO05D004144 2.1e-39 166.0 137 56.2
HanXRQChr10g0296841 Helianthus annuus HOM05D003510 ORTHO05D004144 2.1e-39 166.0 137 56.9
Sed0022764 Sechium edule HOM05D003510 ORTHO05D004144 2.7e-39 165.6 134 59.7
SGA_v2.0_scaffold14G06881 Striga asiatica HOM05D003510 ORTHO05D004144 2.7e-39 165.6 168 50.0
Haze_00607 Corylus avellana HOM05D003510 ORTHO05D004144 3.6e-39 165.2 127 63.0
Solyc04g007190.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 4.7e-39 164.9 134 56.0
Aa31sc376G40 Aethionema arabicum HOM05D003510 ORTHO05D004144 6.1e-39 164.5 140 55.7
ClCG05G022600 Citrullus lanatus HOM05D003510 ORTHO05D004144 6.1e-39 164.5 120 64.2
Carub.0001s3294 Capsella rubella HOM05D003510 ORTHO05D004144 1.8e-38 162.9 139 54.0
AUR62037321 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.8e-38 162.9 139 54.7
arahy.Tifrunner.gnm1.ann1.LKJ3D4 Arachis hypogaea HOM05D003510 ORTHO05D004144 3.0e-38 162.2 140 58.6
PGSC0003DMG401015879 Solanum tuberosum HOM05D003510 ORTHO05D004144 3.9e-38 161.8 134 56.7
AT1G35290 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 5.2e-38 161.4 136 54.4
CARHR220110 Cardamine hirsuta HOM05D003510 ORTHO05D004144 8.8e-38 160.6 141 51.1
MELO3C012259.2 Cucumis melo HOM05D003510 ORTHO05D004144 1.1e-37 160.2 134 56.0
Carub.0001s3293 Capsella rubella HOM05D003510 ORTHO05D004144 4.4e-37 158.3 127 57.5
Migut.H02048 Erythranthe guttata HOM05D003510 ORTHO05D004144 4.4e-37 158.3 142 50.0
Lsat_1_v5_gn_5_163161 Lactuca sativa HOM05D003510 ORTHO05D004144 5.7e-37 157.9 141 51.8
Medtr5g056230 Medicago truncatula HOM05D003510 ORTHO05D004144 5.7e-37 157.9 130 57.7
Sp1g30110 Schrenkiella parvula HOM05D003510 ORTHO05D004144 9.7e-37 157.1 136 52.2
CANSAT35G1684 Cannabis sativa HOM05D003510 ORTHO05D004144 1.3e-36 156.8 139 54.0
SMO119G0319 Selaginella moellendorffii HOM05D003510 ORTHO05D004144 1.1e-35 153.7 137 53.3
Zm00001eb074540 Zea mays HOM05D003510 ORTHO05D004144 1.8e-35 152.9 131 56.5
Ah.01g017060 Amaranthus hybridus HOM05D003510 ORTHO05D004144 2.4e-35 152.5 141 55.3
CANSAT35G0765 Cannabis sativa HOM05D003510 ORTHO05D004144 2.4e-35 152.5 124 57.3
AL1G49960 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 3.1e-35 152.1 136 50.7
AagrBONN_evm.TU.Sc2ySwM_344.2496 Anthoceros agrestis HOM05D003510 ORTHO05D004144 7.0e-35 151.0 138 52.2
BcaB02g07984 Brassica carinata HOM05D003510 ORTHO05D004144 2.0e-34 149.4 124 55.6
CANSAT35G1707 Cannabis sativa HOM05D003510 ORTHO05D004144 3.5e-34 148.7 130 53.8
THA.LOC104821911 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 2.2e-33 146.0 145 48.3
SGA_v2.0_scaffold73G24371 Striga asiatica HOM05D003510 ORTHO05D004144 1.9e-32 142.9 129 55.0
AL1G49980 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 1.6e-31 139.8 114 54.4
Gohir.A04G098000 Gossypium hirsutum HOM05D003510 ORTHO05D004144 8.0e-31 137.5 142 52.1
HanXRQChr10g0300041 Helianthus annuus HOM05D003510 ORTHO05D004144 6.7e-30 134.4 137 49.6
Oeu059502.1 Olea europaea HOM05D003510 ORTHO05D004144 1.2e-29 133.7 102 62.7
Ah.01g005250 Amaranthus hybridus HOM05D000873 ORTHO05D001654 3.3e-29 132.1 141 51.1
Aqoxy1G03141 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 4.4e-29 131.7 137 46.0
Nn4g23884 Nelumbo nucifera HOM05D003510 ORTHO05D004144 4.4e-29 131.7 104 60.6
DCAR_026739 Daucus carota HOM05D003510 ORTHO05D004144 9.7e-29 130.6 136 51.5
DCAR_007249 Daucus carota HOM05D003510 ORTHO05D004144 1.3e-28 130.2 147 45.6
AagrBONN_evm.TU.Sc2ySwM_344.2495 Anthoceros agrestis HOM05D003510 ORTHO05D004144 2.8e-28 129.0 169 39.6
Gohir.A04G098050 Gossypium hirsutum HOM05D003510 ORTHO05D004144 2.8e-28 129.0 106 62.3
Gorai.012G122300 Gossypium raimondii HOM05D003510 ORTHO05D004144 6.3e-28 127.9 106 61.3
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 8.2e-28 127.5 125 47.2
A09p18480 Brassica napus HOM05D003510 ORTHO05D004144 3.1e-27 125.6 136 47.8
Actinidia16662 Actinidia chinensis HOM05D003510 ORTHO05D004144 4.1e-27 125.2 103 62.1
AUR62023875 Chenopodium quinoa HOM05D003510 ORTHO05D004144 5.9e-26 121.3 102 58.8
Migut.M00675 Erythranthe guttata HOM05D003510 ORTHO05D004144 1.7e-25 119.8 138 44.2
Os02g0660800 Oryza sativa ssp. japonica HOM05D003510 ORTHO05D004144 5.0e-25 118.2 136 40.4
Zm00001eb074550 Zea mays HOM05D003510 ORTHO05D004144 6.5e-25 117.9 127 44.9
Os02g0659700 Oryza sativa ssp. japonica HOM05D003510 ORTHO05D004144 4.7e-23 111.7 137 40.9
BolC6t39254H Brassica oleracea HOM05D001294 ORTHO05D001178 1.4e-22 110.2 140 40.0
Gohir.D04G137850 Gossypium hirsutum HOM05D003510 ORTHO05D004144 2.3e-22 109.4 108 51.9
Gohir.A04G098100 Gossypium hirsutum HOM05D003510 ORTHO05D004144 8.8e-22 107.5 96 57.3
Cre04.g213761 Chlamydomonas reinhardtii HOM05D003510 ORTHO05D004144 3.8e-17 92.0 132 41.7
Gohir.D04G137825 Gossypium hirsutum HOM05D003510 ORTHO05D004144 3.8e-17 92.0 108 45.4
Zm00001eb249670 Zea mays HOM05D003510 ORTHO05D004144 3.8e-17 92.0 156 35.3
Actinidia02892 Actinidia chinensis HOM05D003510 ORTHO05D004144 8.6e-17 90.9 72 61.1
AUR62044675 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.1e-16 90.5 73 56.2
ECA234G3856 Erigeron canadensis HOM05D003510 ORTHO05D000001 5.5e-16 88.2 87 48.3
AUR62022280 Chenopodium quinoa HOM05D003510 ORTHO05D004144 4.7e-15 85.1 71 53.5
SEGI_30670 Sequoiadendron giganteum HOM05D003510 ORTHO05D004144 4.7e-15 85.1 70 57.1
AUR62002850 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.8e-14 83.2 69 56.5
Mapoly0104s0006 Marchantia polymorpha HOM05D003510 ORTHO05D004144 2.3e-14 82.8 66 59.1
SEGI_33057 Sequoiadendron giganteum HOM05D003510 ORTHO05D004144 3.0e-14 82.4 73 52.1
Os04g0553300 Oryza sativa ssp. japonica HOM05D003510 ORTHO05D004144 8.9e-14 80.9 71 57.7
AUR62022283 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.5e-13 80.1 141 37.6
AT1G35250 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 7.5e-13 77.8 70 45.7
SMO012G0036 Selaginella moellendorffii HOM05D003510 ORTHO05D004144 1.8e-11 73.2 76 44.7
AL1G50030 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 2.4e-11 72.8 60 53.3
Psat0s3549g0120 Pisum sativum HOM05D003510 ORTHO05D004144 9.2e-11 70.9 67 49.3
SGA_v2.0_scaffold211G42096 Striga asiatica HOM05D003510 ORTHO05D004144 5.9e-10 68.2 77 45.5
Dinv21067 Davidia involucrata HOM05D003510 ORTHO05D004144 7.3e-08 61.2 33 81.8
TPR.G38336 Trifolium pratense HOM05D003510 ORTHO05D004144 9.5e-08 60.8 44 65.9
SalBow8G4707 Salvia bowleyana HOM05D003510 ORTHO05D004144 3.6e-07 58.9 89 42.7
BolC9t55224H Brassica oleracea HOM05D003510 ORTHO05D004144 6.1e-07 58.2 136 27.2
MSTRG.13540 Avicennia marina HOM05D003510 ORTHO05D004144 1.4e-06 57.0 33 72.7
Migut.M00674 Erythranthe guttata HOM05D003510 ORTHO05D004144 8.9e-06 54.3 70 40.0


User provided reference genes

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