Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0285151 Rosa chinensis HOM05D000347 ORTHO05D008062 5.4e-159 564.3 288 100.0
FAN15G1475 Fragaria x ananassa HOM05D000347 ORTHO05D000694 2.1e-139 499.2 287 88.9
FvH4_2g19360 Fragaria vesca HOM05D000347 ORTHO05D008062 2.3e-138 495.7 288 89.2
FAN27G2014 Fragaria x ananassa HOM05D000347 ORTHO05D008062 1.2e-134 483.4 282 88.3
FAN24G2098 Fragaria x ananassa HOM05D000347 ORTHO05D000694 9.2e-127 457.2 286 84.6
Prupe.8G205000 Prunus persica HOM05D000347 ORTHO05D000694 9.9e-105 384.0 277 75.5
MD05G1178500 Malus domestica HOM05D000347 ORTHO05D008062 9.3e-103 377.5 291 70.4
MD10G1166700 Malus domestica HOM05D000347 ORTHO05D008062 2.4e-98 362.8 290 68.3
CiPaw.04G106800 Carya illinoinensis HOM05D000347 ORTHO05D000694 1.4e-79 300.4 287 59.6
GSVIVG01028561001 Vitis vinifera HOM05D000347 ORTHO05D008062 5.7e-76 288.5 275 61.8
Manes.12G042000 Manihot esculenta HOM05D000347 ORTHO05D008062 1.8e-74 283.5 291 57.7
Thecc.01G228300 Theobroma cacao HOM05D000347 ORTHO05D008062 3.1e-74 282.7 291 58.4
Eucgr.H00807 Eucalyptus grandis HOM05D000347 ORTHO05D008062 9.4e-71 271.2 292 54.1
Dinv19218 Davidia involucrata HOM05D000347 ORTHO05D008062 1.5e-68 263.8 290 55.5
Potri.002G240300 Populus trichocarpa HOM05D000347 ORTHO05D008062 2.8e-67 259.6 285 56.1
Ciclev10021356m.g Citrus clementina HOM05D000347 ORTHO05D008062 1.5e-65 253.8 305 51.1
Hma1.2p1_0351F.1_g132820 Hydrangea macrophylla HOM05D000347 ORTHO05D008062 6.1e-62 241.9 283 52.3
Gohir.A11G136100 Gossypium hirsutum HOM05D000347 ORTHO05D008062 7.9e-62 241.5 292 51.0
Gohir.D11G142500 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.0e-61 241.1 292 51.4
Gorai.007G152800 Gossypium raimondii HOM05D000347 ORTHO05D008062 1.8e-61 240.4 291 51.2
Cc01_g17250 Coffea canephora HOM05D000347 ORTHO05D008062 4.4e-60 235.7 299 52.8
QL09p044668 Quercus lobata HOM05D000347 ORTHO05D008062 7.4e-60 235.0 184 69.6
Migut.D00520 Erythranthe guttata HOM05D000347 ORTHO05D008062 2.2e-59 233.4 300 51.0
TAR636G2566 Trochodendron aralioides HOM05D000347 ORTHO05D008062 1.1e-58 231.1 304 47.4
Glyma.18G173300 Glycine max HOM05D000347 ORTHO05D008062 2.4e-58 229.9 296 49.7
Glyma.08G356200 Glycine max HOM05D000347 ORTHO05D008062 9.1e-58 228.0 298 49.7
PGR083G0949 Punica granatum HOM05D000347 ORTHO05D008062 2.0e-57 226.9 293 48.8
TWI18G0408 Tripterygium wilfordii HOM05D000347 ORTHO05D008062 3.5e-57 226.1 354 44.4
Phvul.008G123300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 1.0e-56 224.6 299 50.2
Lj1g0023077 Lotus japonicus HOM05D000347 ORTHO05D008062 1.7e-56 223.8 289 48.8
Sabra02G0183100 Salix brachista HOM05D000347 ORTHO05D008062 2.9e-56 223.0 282 51.8
CsaV3_3G028770 Cucumis sativus L. HOM05D000347 ORTHO05D008062 2.5e-55 219.9 290 47.9
MSTRG.21431 Avicennia marina HOM05D000347 ORTHO05D008062 4.7e-54 215.7 286 47.6
TAR365G0021 Trochodendron aralioides HOM05D000347 ORTHO05D008062 3.0e-53 213.0 307 44.6
Nn1g07779 Nelumbo nucifera HOM05D000347 ORTHO05D008062 5.2e-53 212.2 300 44.7
Sed0024927 Sechium edule HOM05D000901 ORTHO05D008062 1.2e-52 211.1 291 47.4
Medtr0027s0180 Medicago truncatula HOM05D000347 ORTHO05D008062 1.5e-52 210.7 268 47.0
CANSAT01G0926 Cannabis sativa HOM05D000347 ORTHO05D008062 2.0e-52 210.3 315 46.3
VMungo1383G0854 Vigna mungo HOM05D000347 ORTHO05D008062 2.6e-52 209.9 292 47.6
CSS0034279 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D008062 1.3e-51 207.6 187 62.6
Actinidia23733 Actinidia chinensis HOM05D000347 ORTHO05D008062 2.8e-51 206.5 290 47.9
CiPaw.03G151400 Carya illinoinensis HOM05D000347 ORTHO05D008062 2.8e-51 206.5 183 64.5
TAR365G1261 Trochodendron aralioides HOM05D000347 ORTHO05D008062 4.8e-51 205.7 320 43.1
Actinidia37581 Actinidia chinensis HOM05D000347 ORTHO05D008062 4.1e-50 202.6 182 62.6
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 5.3e-50 202.2 285 46.7
TPR.G15284 Trifolium pratense HOM05D000347 ORTHO05D008062 5.0e-48 195.7 291 44.7
Actinidia30090 Actinidia chinensis HOM05D000347 ORTHO05D008062 4.2e-47 192.6 182 61.0
Sed0024241 Sechium edule HOM05D000347 ORTHO05D008062 5.5e-47 192.2 236 48.3
SGA_v2.0_scaffold1G00715 Striga asiatica HOM05D000347 ORTHO05D008062 7.2e-47 191.8 290 48.6
Nitab4.5_0000866g0010 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.6e-46 190.7 274 48.2
Haze_24776 Corylus avellana HOM05D000347 ORTHO05D008062 6.1e-46 188.7 199 59.3
Rhsim13G0044000 Rhododendron simsii HOM05D000347 ORTHO05D008062 6.8e-45 185.3 180 58.3
Oeu018505.1 Olea europaea HOM05D000879 ORTHO05D002043 2.8e-43 179.9 177 58.8
Solyc09g061715.1 Solanum lycopersicum HOM05D000347 ORTHO05D008062 1.8e-42 177.2 275 45.8
Sopen09g024710 Solanum pennellii HOM05D000347 ORTHO05D008062 1.8e-42 177.2 275 45.8
HanXRQChr01g0014681 Helianthus annuus HOM05D000347 ORTHO05D008062 5.4e-42 175.6 186 58.6
Sopen06g034940 Solanum pennellii HOM05D000347 ORTHO05D008062 5.4e-42 175.6 296 42.9
Psat3g142320 Pisum sativum HOM05D000347 ORTHO05D008062 9.1e-42 174.9 291 43.3
Cpa.g.sc8.175 Carica papaya HOM05D000347 ORTHO05D008062 1.3e-40 171.0 302 43.7
Ca_07542_v3 Cicer arietinum L. HOM05D000347 ORTHO05D008062 1.3e-40 171.0 184 52.2
Lalb_Chr01g0022451 Lupinus albus HOM05D000347 ORTHO05D008062 1.3e-40 171.0 291 41.9
SalBow4G1846 Salvia bowleyana HOM05D000347 ORTHO05D008062 1.7e-40 170.6 181 59.1
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 1.7e-40 170.6 290 43.8
Lalb_Chr03g0041901 Lupinus albus HOM05D000347 ORTHO05D008062 6.5e-40 168.7 263 43.3
Medtr7g059080 Medicago truncatula HOM05D000347 ORTHO05D008062 4.2e-39 166.0 160 54.4
Solyc06g083560.3 Solanum lycopersicum HOM05D000347 ORTHO05D008062 5.5e-39 165.6 293 42.7
MELO3C018065.2 Cucumis melo HOM05D000347 ORTHO05D008062 9.5e-39 164.9 193 53.9
Peaxi162Scf02141g00004 Petunia axillaris HOM05D000347 ORTHO05D008062 6.1e-38 162.2 196 51.0
Glyma.16G094000 Glycine max HOM05D000347 ORTHO05D008062 7.5e-36 155.2 289 37.7
Aqoxy2G03776 Aquilegia oxysepala HOM05D000347 ORTHO05D008062 1.7e-35 154.1 300 39.3
Lsat_1_v5_gn_5_179760 Lactuca sativa HOM05D000347 ORTHO05D008062 1.7e-35 154.1 213 50.2
Gohir.D08G211800 Gossypium hirsutum HOM05D000347 ORTHO05D008062 2.8e-35 153.3 300 39.3
Gorai.004G225100 Gossypium raimondii HOM05D000347 ORTHO05D008062 2.8e-35 153.3 299 40.1
vmacro02746 Vaccinium macrocarpon HOM05D000347 ORTHO05D008062 4.9e-35 152.5 183 53.6
Gohir.A08G194000 Gossypium hirsutum HOM05D000347 ORTHO05D008062 2.4e-34 150.2 304 39.8
arahy.Tifrunner.gnm1.ann1.W0YDFD Arachis hypogaea HOM05D000347 ORTHO05D008062 1.2e-33 147.9 301 38.2
arahy.Tifrunner.gnm1.ann1.54FW37 Arachis hypogaea HOM05D000347 ORTHO05D008062 3.8e-32 142.9 253 39.1
PGSC0003DMG400003422 Solanum tuberosum HOM05D000347 ORTHO05D008062 6.1e-30 135.6 181 50.3
Ah.08g214040 Amaranthus hybridus HOM05D000901 ORTHO05D008062 8.0e-30 135.2 248 40.7
AUR62031831 Chenopodium quinoa HOM05D000347 ORTHO05D008062 1.3e-27 127.9 195 47.7
VMungo0331G1006 Vigna mungo HOM05D000347 ORTHO05D008062 1.1e-26 124.8 288 34.0
Nitab4.5_0003790g0070 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.4e-26 124.4 114 64.9
Peaxi162Scf00517g00428 Petunia axillaris HOM05D000347 ORTHO05D008062 1.6e-25 120.9 211 41.2
DCAR_004713 Daucus carota HOM05D000347 ORTHO05D008062 1.3e-24 117.9 185 45.4
Medtr0027s0200 Medicago truncatula HOM05D000347 ORTHO05D008062 1.7e-24 117.5 195 40.0
Sc05g0002410 Simmondsia chinensis HOM05D000347 ORTHO05D008062 3.0e-24 116.7 301 37.9
Lj3g0009150 Lotus japonicus HOM05D000347 ORTHO05D008062 8.6e-24 115.2 241 36.5
DCAR_018551 Daucus carota HOM05D000347 ORTHO05D008062 2.5e-23 113.6 195 43.6
Nn3g19918 Nelumbo nucifera HOM05D000347 ORTHO05D008062 9.5e-23 111.7 197 39.6
Nitab4.5_0002085g0080 Nicotiana tabacum HOM05D000347 ORTHO05D008062 9.5e-23 111.7 219 39.3
Phvul.010G019300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 6.2e-22 109.0 280 33.9
Atru.chr5.2056 Acer truncatum HOM05D000347 ORTHO05D008062 1.2e-20 104.8 113 52.2
Carub.0003s2514 Capsella rubella HOM05D011699 ORTHO05D008062 4.9e-19 99.4 302 35.4
Phvul.010G019000 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 1.1e-18 98.2 219 36.5
Oeu058867.1 Olea europaea HOM05D000347 ORTHO05D008062 1.4e-18 97.8 76 67.1
Sc24g0003600 Simmondsia chinensis HOM05D000347 ORTHO05D008062 1.4e-18 97.8 175 37.7
AUR62008877 Chenopodium quinoa HOM05D000347 ORTHO05D008062 1.9e-18 97.4 145 44.1
AT3G24750 Arabidopsis thaliana HOM05D011699 ORTHO05D008062 2.0e-17 94.0 232 36.2
MBI07_g21075_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D008062 2.7e-17 93.6 192 41.7
AL3G40480 Arabidopsis lyrata HOM05D011699 ORTHO05D008062 1.3e-16 91.3 233 36.5
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 1.3e-16 91.3 136 42.6
A07p07520 Brassica napus HOM05D011699 ORTHO05D008062 2.3e-16 90.5 227 34.4
BraA07t28543Z Brassica rapa HOM05D011699 ORTHO05D008062 2.3e-16 90.5 227 34.4
C07p11290 Brassica napus HOM05D011699 ORTHO05D008062 8.6e-16 88.6 233 33.0
BcaB06g26692 Brassica carinata HOM05D011699 ORTHO05D008062 1.9e-15 87.4 228 31.1
BolC7t41607H Brassica oleracea HOM05D011699 ORTHO05D008062 4.3e-15 86.3 228 33.3
BcaC06g35749 Brassica carinata HOM05D011699 ORTHO05D008062 7.3e-15 85.5 228 33.3
THA.LOC104821644 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 2.1e-14 84.0 201 35.3
Sp3g22490 Schrenkiella parvula HOM05D011699 ORTHO05D008062 8.1e-14 82.0 285 29.8
Thhalv10002691m.g Eutrema salsugineum HOM05D011699 ORTHO05D008062 6.8e-13 79.0 154 41.6
EL10Ac7g17790 Beta vulgaris HOM05D000347 ORTHO05D008062 1.5e-12 77.8 242 32.6
ECA248G1409 Erigeron canadensis HOM05D000102 ORTHO05D000138 7.5e-12 75.5 74 56.8
CARHR101080 Cardamine hirsuta HOM05D011699 ORTHO05D008062 2.4e-10 70.5 242 32.6
PSO017G1362 Papaver somniferum HOM05D000347 ORTHO05D008062 2.7e-09 67.0 225 32.0
PSO063G6109 Papaver somniferum HOM05D000347 ORTHO05D008062 1.7e-08 64.3 145 41.4
THA.LOC104804603 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 6.6e-08 62.4 303 26.7
Nitab4.5_0006773g0040 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.5e-07 61.2 43 74.4
Zm00001eb379630 Zea mays HOM05D042818 ORTHO05D008062 3.6e-06 56.6 194 33.0
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 4.7e-06 56.2 183 30.1


User provided reference genes

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