Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 2.8e-177 625.2 311 100.0
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 3.6e-161 571.6 311 90.4
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 4.7e-161 571.2 311 90.0
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 1.5e-146 523.1 318 80.5
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 9.0e-144 513.8 323 76.8
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 1.4e-141 506.5 307 80.1
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 2.7e-140 502.3 314 76.8
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 2.8e-137 492.3 302 79.8
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 8.1e-137 490.7 317 76.3
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 5.3e-136 488.0 324 74.4
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 9.0e-136 487.3 318 73.9
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.2e-135 486.9 318 75.5
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 1.2e-135 486.9 322 74.2
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 3.4e-135 485.3 319 73.7
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 3.4e-135 485.3 316 74.4
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 7.6e-135 484.2 307 75.6
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.9e-134 482.3 319 73.0
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 4.9e-134 481.5 314 74.8
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 8.4e-134 480.7 328 70.4
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 8.4e-134 480.7 318 72.6
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 1.1e-133 480.3 309 72.5
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 1.9e-133 479.6 318 73.3
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 2.4e-133 479.2 308 74.7
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.4e-133 479.2 319 72.7
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 4.2e-133 478.4 312 75.0
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 4.2e-133 478.4 315 73.7
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 5.4e-133 478.0 310 75.5
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 7.1e-133 477.6 319 72.4
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 9.3e-133 477.2 314 75.5
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 9.3e-133 477.2 318 72.6
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 1.2e-132 476.9 318 72.6
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.6e-132 476.5 309 75.1
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 2.7e-132 475.7 310 72.3
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 4.6e-132 474.9 314 74.5
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 4.6e-132 474.9 318 73.0
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 7.9e-132 474.2 315 73.7
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 7.9e-132 474.2 315 73.3
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 1.3e-131 473.4 314 74.2
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 1.3e-131 473.4 312 74.4
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 2.3e-131 472.6 299 75.9
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 3.9e-131 471.9 307 73.6
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 5.1e-131 471.5 317 72.9
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 8.7e-131 470.7 308 73.4
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 1.1e-130 470.3 308 74.0
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 1.1e-130 470.3 307 73.0
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 1.5e-130 469.9 312 73.7
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 2.5e-130 469.2 322 70.5
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 2.5e-130 469.2 322 70.5
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 3.3e-130 468.8 311 73.6
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 3.3e-130 468.8 309 74.4
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 7.4e-130 467.6 311 71.4
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 2.8e-129 465.7 322 70.2
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 4.8e-129 464.9 319 70.5
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 6.2e-129 464.5 312 74.0
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 2.4e-128 462.6 313 71.2
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 2.4e-128 462.6 283 80.9
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 3.1e-128 462.2 312 73.7
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 4.0e-128 461.8 310 70.3
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 6.9e-128 461.1 299 73.6
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.2e-127 460.3 312 73.4
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 1.2e-127 460.3 310 70.0
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 1.5e-127 459.9 311 71.7
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 7.6e-127 457.6 313 72.5
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 7.6e-127 457.6 315 72.4
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 1.7e-126 456.4 315 71.1
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 3.8e-126 455.3 310 71.6
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 4.9e-126 454.9 311 73.0
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 6.4e-126 454.5 313 72.2
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 1.9e-125 453.0 315 72.4
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.9e-125 453.0 324 70.7
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 2.5e-125 452.6 307 71.3
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 2.7e-124 449.1 311 70.4
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 4.6e-124 448.4 315 69.2
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 7.9e-124 447.6 308 71.1
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 1.0e-123 447.2 315 69.8
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 1.3e-123 446.8 316 69.6
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 8.7e-123 444.1 319 70.2
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 1.1e-122 443.7 307 69.7
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 1.1e-122 443.7 313 69.0
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 2.5e-122 442.6 315 68.9
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 3.3e-122 442.2 309 69.6
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 5.6e-122 441.4 340 65.6
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 7.4e-122 441.0 304 70.4
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 8.2e-121 437.6 315 67.9
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 9.0e-120 434.1 309 68.6
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 2.6e-119 432.6 306 69.6
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 1.0e-118 430.6 315 67.9
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 6.5e-118 427.9 339 64.3
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 1.8e-115 419.9 309 65.4
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 2.0e-111 406.4 313 65.5
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 6.1e-108 394.8 333 61.3
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 5.1e-107 391.7 377 57.3
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 8.8e-107 391.0 296 66.6
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 7.4e-106 387.9 275 69.8
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 3.7e-105 385.6 310 62.9
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 3.1e-104 382.5 313 62.3
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 2.0e-98 363.2 304 62.2
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 2.2e-97 359.8 230 73.9
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 6.3e-97 358.2 302 56.6
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 2.4e-96 356.3 304 57.2
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 3.5e-95 352.4 229 73.4
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 2.2e-94 349.7 302 57.0
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.1e-93 347.4 302 57.3
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 3.2e-93 345.9 275 64.0
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 7.2e-93 344.7 301 56.5
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 2.2e-86 323.2 230 68.3
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 1.4e-80 303.9 352 46.3
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 4.7e-76 288.9 197 68.0
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 4.7e-76 288.9 232 61.2
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 1.3e-73 280.8 188 72.9
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 6.3e-73 278.5 337 46.3
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 4.2e-69 265.8 187 67.4
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 4.2e-69 265.8 204 67.2
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.6e-52 210.7 230 54.3
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 2.1e-52 210.3 216 49.5
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 3.4e-50 203.0 161 63.4
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 1.1e-48 198.0 152 63.8
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 5.4e-48 195.7 288 43.1
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.8e-44 183.3 188 55.3
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 7.6e-42 175.3 109 75.2
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.2e-39 167.9 295 38.0
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 2.1e-39 167.2 303 38.6
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 1.3e-33 147.9 124 60.5
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 5.6e-29 132.5 121 59.5
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.6e-28 131.0 73 90.4
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.4e-24 117.9 83 65.1
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 4.2e-24 116.3 167 46.1
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 7.1e-24 115.5 121 55.4
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 2.1e-23 114.0 70 78.6
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 3.9e-22 109.8 69 72.5
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 1.5e-21 107.8 118 49.2
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.9e-21 107.5 80 65.0
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 2.5e-21 107.1 115 52.2
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.3e-17 94.7 62 75.8
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 2.9e-17 93.6 145 37.9
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 5.5e-16 89.4 89 49.4
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 4.6e-15 86.3 81 59.3
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.5e-13 81.3 60 66.7
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 4.3e-13 79.7 83 49.4
BraA02t08756Z Brassica rapa HOM05D026193 ORTHO05D028104 6.5e-09 65.9 163 33.7
A02p37740 Brassica napus HOM05D026193 ORTHO05D028104 3.2e-08 63.5 163 33.1
arahy.Tifrunner.gnm1.ann1.6Q4MDY Arachis hypogaea HOM05D005470 ORTHO05D038880 1.2e-07 61.6 56 57.1
Actinidia30088 Actinidia chinensis HOM05D005470 ORTHO05D057321 5.1e-06 56.2 44 68.2


User provided reference genes

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