Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 5.4e-295 1016.9 513 100.0
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 1.7e-261 905.6 511 88.8
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.6e-254 882.5 513 86.4
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 3.8e-248 861.3 566 78.4
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.0e-245 853.2 477 89.3
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 2.4e-218 762.3 516 75.6
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 6.1e-214 747.7 516 74.2
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 1.7e-163 580.1 518 60.4
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 2.7e-161 572.8 518 62.4
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 3.0e-160 569.3 520 60.4
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 2.2e-155 553.1 514 59.1
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 1.4e-154 550.4 522 57.7
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 1.6e-153 547.0 517 58.8
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 3.3e-151 539.3 518 58.7
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 2.8e-150 536.2 517 57.3
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 1.8e-149 533.5 526 56.5
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 3.1e-149 532.7 517 57.3
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 5.8e-148 528.5 596 53.4
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 6.4e-147 525.0 517 56.7
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 6.4e-147 525.0 522 57.9
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 1.9e-146 523.5 497 59.0
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.9e-146 523.5 518 55.8
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 1.9e-143 513.5 517 55.1
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 4.3e-143 512.3 518 56.6
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 3.6e-142 509.2 573 53.2
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 6.2e-142 508.4 520 53.8
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 2.4e-141 506.5 479 58.0
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 2.6e-140 503.1 517 53.0
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 7.6e-140 501.5 522 54.8
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 2.1e-137 493.4 516 52.3
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 5.6e-135 485.3 521 53.7
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 4.8e-134 482.3 517 52.2
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 8.1e-134 481.5 514 52.3
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 4.0e-133 479.2 519 51.3
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 5.3e-133 478.8 484 54.8
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 9.0e-133 478.0 513 51.9
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 2.6e-132 476.5 518 52.9
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 4.5e-132 475.7 514 51.8
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.3e-131 474.2 523 53.0
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 4.9e-131 472.2 515 52.4
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 8.4e-131 471.5 518 53.5
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 8.4e-131 471.5 519 53.6
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 3.2e-130 469.5 519 51.3
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 7.1e-130 468.4 515 52.6
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 2.1e-129 466.8 496 51.4
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 3.9e-128 462.6 525 53.0
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 1.1e-127 461.1 518 50.0
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 1.9e-127 460.3 514 51.6
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 3.1e-125 453.0 522 49.6
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.0e-123 448.0 517 49.1
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 1.3e-123 447.6 480 51.7
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.2e-123 446.8 516 48.8
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 1.1e-122 444.5 516 49.8
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 1.4e-122 444.1 485 51.8
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 1.9e-122 443.7 553 46.5
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 4.2e-122 442.6 518 50.0
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 9.3e-122 441.4 492 50.6
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 1.2e-121 441.0 515 49.9
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 1.6e-121 440.7 515 50.1
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 1.6e-121 440.7 524 49.0
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 2.1e-121 440.3 514 49.6
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 6.0e-121 438.7 515 49.9
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 7.9e-121 438.3 515 49.9
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 7.9e-121 438.3 515 49.9
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 2.3e-120 436.8 492 50.2
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 3.9e-120 436.0 517 48.7
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 8.7e-120 434.9 444 54.1
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 2.5e-119 433.3 515 49.5
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 2.5e-119 433.3 515 49.5
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.5e-119 433.3 495 48.9
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 3.3e-119 433.0 515 48.7
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.6e-118 430.6 447 52.3
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 2.8e-118 429.9 522 48.1
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 3.7e-118 429.5 435 53.8
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 1.4e-117 427.6 440 52.5
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 9.0e-117 424.9 513 46.2
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 1.5e-116 424.1 522 48.1
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 2.0e-116 423.7 490 50.0
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 3.4e-116 422.9 460 50.4
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 3.4e-116 422.9 497 49.9
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 3.4e-116 422.9 264 79.9
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 7.6e-116 421.8 441 53.1
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 7.6e-116 421.8 518 49.4
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 2.9e-115 419.9 515 48.9
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 1.9e-114 417.2 461 52.1
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 3.5e-113 412.9 464 49.8
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 2.3e-112 410.2 520 45.4
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 4.3e-111 406.0 524 43.1
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 9.7e-111 404.8 583 43.2
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 1.3e-110 404.4 492 49.0
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 1.1e-109 401.4 519 47.8
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.3e-107 394.4 351 60.4
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 1.4e-101 374.4 526 40.7
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 1.6e-97 360.9 476 46.8
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 9.7e-95 351.7 371 52.0
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 1.1e-87 328.2 378 46.3
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 1.1e-87 328.2 525 40.8
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.2e-84 318.2 302 58.3
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 2.7e-84 317.0 444 43.7
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 2.6e-79 300.4 378 46.8
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 4.1e-77 293.1 445 39.6
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.4e-72 278.1 211 67.8
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 6.6e-67 259.2 491 36.3
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 1.0e-59 235.3 315 43.2
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 2.1e-57 227.6 190 63.2
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 2.3e-56 224.2 461 36.2
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 7.8e-52 209.1 246 48.4
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 2.5e-50 204.1 457 32.6
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 9.5e-50 202.2 302 44.4
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 1.4e-48 198.4 464 31.7
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 1.8e-48 198.0 480 32.5
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 1.8e-48 198.0 227 47.1
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 2.2e-46 191.0 308 39.6
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 1.4e-45 188.3 140 66.4
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 1.9e-45 188.0 311 40.5
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 8.6e-43 179.1 270 41.5
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 8.6e-35 152.5 138 54.3
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 8.1e-33 146.0 123 61.8
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 1.3e-30 138.7 118 59.3
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.6e-25 120.6 130 53.1
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 9.3e-21 105.9 123 46.3
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 4.3e-18 97.1 143 38.5
TAR362G0264 Trochodendron aralioides HOM05D006020 ORTHO05D007665 2.2e-14 84.7 105 42.9
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 1.9e-13 81.6 221 28.5
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.5e-10 72.0 102 44.1
Haze_05914 Corylus avellana HOM05D006020 ORTHO05D007665 2.5e-10 71.2 103 44.7
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.3e-09 68.9 95 44.2
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 1.2e-07 62.4 207 28.5
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 5.8e-07 60.1 63 44.4
BcaB07g30044 Brassica carinata HOM05D006020 ORTHO05D007665 3.8e-06 57.4 45 57.8


User provided reference genes

Program Settings