Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0284401 Rosa chinensis HOM05D002747 ORTHO05D003069 7.2e-40 166.8 83 100.0
RcHm_v2.0_Chr6g0284421 Rosa chinensis HOM05D002747 ORTHO05D003069 6.1e-23 110.5 162 47.5
FvH4_2g18750 Fragaria vesca HOM05D002747 ORTHO05D003069 4.1e-19 97.8 170 41.8
FAN24G0431 Fragaria x ananassa HOM05D002747 ORTHO05D003069 4.1e-19 97.8 170 41.8
FAN27G3095 Fragaria x ananassa HOM05D002747 ORTHO05D003069 4.5e-18 94.4 170 40.6
RcHm_v2.0_Chr6g0284441 Rosa chinensis HOM05D002747 ORTHO05D003069 5.9e-18 94.0 170 41.8
FAN15G0280 Fragaria x ananassa HOM05D002747 ORTHO05D003069 8.5e-17 90.1 187 38.0
MD05G1173000 Malus domestica HOM05D002747 ORTHO05D003069 9.8e-13 76.6 170 34.7
FAN12G1649 Fragaria x ananassa HOM05D002747 ORTHO05D003069 2.8e-12 75.1 163 34.4
Cfa014907 Carpinus fangiana HOM05D002747 ORTHO05D003069 4.8e-12 74.3 173 32.4
Atru.chr4.1669 Acer truncatum HOM05D002747 ORTHO05D003069 6.3e-12 73.9 170 33.5
Atru.chr6.1415 Acer truncatum HOM05D002747 ORTHO05D003069 8.3e-12 73.6 172 32.0
EL10Ac3g07480 Beta vulgaris HOM05D002747 ORTHO05D003069 1.1e-11 73.2 173 32.4
TAR362G0277 Trochodendron aralioides HOM05D002747 ORTHO05D003069 1.1e-11 73.2 170 32.9
Ah.13g078100 Amaranthus hybridus HOM05D002747 ORTHO05D003069 1.4e-11 72.8 169 33.1
FvH4_4g13780 Fragaria vesca HOM05D002747 ORTHO05D003069 1.4e-11 72.8 169 33.1
FAN22G0083 Fragaria x ananassa HOM05D002747 ORTHO05D003069 1.4e-11 72.8 169 33.1
THA.LOC104801025 Tarenaya hassleriana HOM05D002747 ORTHO05D003069 1.4e-11 72.8 169 33.1
Sc25g0005830 Simmondsia chinensis HOM05D002747 ORTHO05D003069 4.1e-11 71.2 169 32.5
BcaC05g24434 Brassica carinata HOM05D002747 ORTHO05D003069 5.4e-11 70.9 173 31.2
QL09p052152 Quercus lobata HOM05D002747 ORTHO05D003069 5.4e-11 70.9 169 32.0
QL09p053028 Quercus lobata HOM05D002747 ORTHO05D003069 5.4e-11 70.9 169 32.0
THA.LOC104826121 Tarenaya hassleriana HOM05D002747 ORTHO05D003069 5.4e-11 70.9 169 32.5
AUR62020830 Chenopodium quinoa HOM05D002747 ORTHO05D003069 7.0e-11 70.5 178 32.6
Eucgr.H02771 Eucalyptus grandis HOM05D002747 ORTHO05D003069 7.0e-11 70.5 170 31.8
BolC5t29084H Brassica oleracea HOM05D002747 ORTHO05D003069 9.1e-11 70.1 171 31.6
Ciclev10021209m.g Citrus clementina HOM05D002747 ORTHO05D003069 9.1e-11 70.1 112 39.3
PGR083G0467 Punica granatum HOM05D002747 ORTHO05D003069 9.1e-11 70.1 169 32.5
Sed0019212 Sechium edule HOM05D002747 ORTHO05D003069 9.1e-11 70.1 169 32.5
A10p03300 Brassica napus HOM05D002747 ORTHO05D003069 1.2e-10 69.7 170 31.8
BraA10t42604Z Brassica rapa HOM05D002747 ORTHO05D003069 1.2e-10 69.7 170 31.8
Sp1g03690 Schrenkiella parvula HOM05D002747 ORTHO05D003069 1.2e-10 69.7 171 31.0
Actinidia39241 Actinidia chinensis HOM05D002747 ORTHO05D003069 1.6e-10 69.3 169 32.0
BcaB02g06896 Brassica carinata HOM05D002747 ORTHO05D003069 1.6e-10 69.3 169 32.0
Lalb_Chr12g0205501 Lupinus albus HOM05D002747 ORTHO05D003069 1.6e-10 69.3 168 32.1
SGA_v2.0_scaffold128G34075 Striga asiatica HOM05D002747 ORTHO05D003069 2.0e-10 68.9 169 31.4
Gohir.D07G206600 Gossypium hirsutum HOM05D002747 ORTHO05D003069 2.7e-10 68.6 171 31.0
Gorai.001G232900 Gossypium raimondii HOM05D002747 ORTHO05D003069 2.7e-10 68.6 171 31.0
TWI53G0635 Tripterygium wilfordii HOM05D002747 ORTHO05D003069 2.7e-10 68.6 169 32.5
GSVIVG01020909001 Vitis vinifera HOM05D002747 ORTHO05D003069 2.7e-10 68.6 169 32.5
CsaV3_2G011630 Cucumis sativus L. HOM05D002747 ORTHO05D003069 3.5e-10 68.2 169 32.5
DCAR_024465 Daucus carota HOM05D002747 ORTHO05D003069 3.5e-10 68.2 168 31.0
Duzib268G0508 Durio zibethinus HOM05D002747 ORTHO05D003069 3.5e-10 68.2 170 30.6
BcaB03g13469 Brassica carinata HOM05D002747 ORTHO05D003069 4.5e-10 67.8 169 31.4
Ciclev10005062m.g Citrus clementina HOM05D002747 ORTHO05D003069 4.5e-10 67.8 169 31.4
Cc03_g07950 Coffea canephora HOM05D002747 ORTHO05D003069 4.5e-10 67.8 92 42.4
Migut.N00399 Erythranthe guttata HOM05D002747 ORTHO05D003069 4.5e-10 67.8 169 30.8
Thhalv10007758m.g Eutrema salsugineum HOM05D002747 ORTHO05D003069 4.5e-10 67.8 169 30.8
Lj3C402G3 Lonicera japonica HOM05D002747 ORTHO05D003069 4.5e-10 67.8 172 31.4
Lj4g0002017 Lotus japonicus HOM05D002747 ORTHO05D003069 4.5e-10 67.8 168 31.5
Nn1g07916 Nelumbo nucifera HOM05D002747 ORTHO05D003069 4.5e-10 67.8 169 31.4
unitig_22.g6824 Utricularia gibba HOM05D002747 ORTHO05D003069 4.5e-10 67.8 169 30.8
BcaC07g36875 Brassica carinata HOM05D002747 ORTHO05D003069 5.9e-10 67.4 169 31.4
A08p36680 Brassica napus HOM05D002747 ORTHO05D003069 5.9e-10 67.4 169 31.4
C08p01530 Brassica napus HOM05D002747 ORTHO05D003069 5.9e-10 67.4 169 31.4
Cpa.g.sc443.3 Carica papaya HOM05D002747 ORTHO05D003069 5.9e-10 67.4 173 31.8
MELO3C020440.2 Cucumis melo HOM05D002747 ORTHO05D003069 5.9e-10 67.4 92 43.5
FAN07G2519 Fragaria x ananassa HOM05D002747 ORTHO05D003069 5.9e-10 67.4 92 42.4
Gohir.A07G200300 Gossypium hirsutum HOM05D002747 ORTHO05D003069 5.9e-10 67.4 169 31.4
Peaxi162Scf00652g00122 Petunia axillaris HOM05D002747 ORTHO05D003069 5.9e-10 67.4 169 31.4
ATR0609G128 Amborella trichopoda HOM05D002747 ORTHO05D003069 7.7e-10 67.0 169 32.0
arahy.Tifrunner.gnm1.ann1.12L8KL Arachis hypogaea HOM05D002747 ORTHO05D003069 7.7e-10 67.0 168 31.0
arahy.Tifrunner.gnm1.ann1.AI5VH5 Arachis hypogaea HOM05D002747 ORTHO05D003069 7.7e-10 67.0 168 31.0
ClCG06G007890 Citrullus lanatus HOM05D002747 ORTHO05D003069 7.7e-10 67.0 92 42.4
Dinv27226 Davidia involucrata HOM05D002747 ORTHO05D003069 7.7e-10 67.0 169 31.4
Duzib151G1154 Durio zibethinus HOM05D002747 ORTHO05D003069 7.7e-10 67.0 170 30.6
MD04G1012000 Malus domestica HOM05D002747 ORTHO05D003069 7.7e-10 67.0 169 31.4
Oeu055771.1 Olea europaea HOM05D002747 ORTHO05D003069 7.7e-10 67.0 92 42.4
RcHm_v2.0_Chr4g0414661 Rosa chinensis HOM05D002747 ORTHO05D003069 7.7e-10 67.0 169 31.4
Solyc12g098420.3 Solanum lycopersicum HOM05D002747 ORTHO05D003069 7.7e-10 67.0 170 30.6
Aqoxy5G00020 Aquilegia oxysepala HOM05D002747 ORTHO05D003069 1.0e-09 66.6 169 32.0
BolC8t46958H Brassica oleracea HOM05D002747 ORTHO05D003069 1.0e-09 66.6 171 31.0
BraA08t35571Z Brassica rapa HOM05D002747 ORTHO05D003069 1.0e-09 66.6 171 31.0
CANSAT78G0345 Cannabis sativa HOM05D002747 ORTHO05D003069 1.0e-09 66.6 169 30.8
Phvul.003G290800 Phaseolus vulgaris HOM05D002747 ORTHO05D003069 1.0e-09 66.6 170 31.2
Sopen12g033200 Solanum pennellii HOM05D002747 ORTHO05D003069 1.0e-09 66.6 170 30.6
PGSC0003DMG401004570 Solanum tuberosum HOM05D002747 ORTHO05D003069 1.0e-09 66.6 170 30.6
HPP92_021423 Vanilla planifolia HOM05D002747 ORTHO05D003069 1.0e-09 66.6 171 29.2
MSTRG.21971 Avicennia marina HOM05D002747 ORTHO05D003069 1.3e-09 66.2 169 30.2
Cfa002598 Carpinus fangiana HOM05D002747 ORTHO05D003069 1.3e-09 66.2 92 41.3
AUR62018589 Chenopodium quinoa HOM05D002747 ORTHO05D003069 1.3e-09 66.2 91 41.8
ECA248G3569 Erigeron canadensis HOM05D002747 ORTHO05D003069 1.3e-09 66.2 169 30.8
CSS0010384 Camellia sinensis var. sinensis HOM05D002747 ORTHO05D003069 2.2e-09 65.5 170 31.8
CSS0018864 Camellia sinensis var. sinensis HOM05D002747 ORTHO05D003069 2.2e-09 65.5 170 31.8
CAN.G767.5 Capsicum annuum HOM05D002747 ORTHO05D003069 2.2e-09 65.5 171 30.4
Haze_24849 Corylus avellana HOM05D002747 ORTHO05D003069 2.2e-09 65.5 92 41.3
Medtr8g085380 Medicago truncatula HOM05D002747 ORTHO05D003069 2.2e-09 65.5 168 30.4
Potri.002G244500 Populus trichocarpa HOM05D002747 ORTHO05D003069 2.2e-09 65.5 170 31.8
Thecc.04G200800 Theobroma cacao HOM05D002747 ORTHO05D003069 2.2e-09 65.5 169 30.8
Lalb_Chr13g0294891 Lupinus albus HOM05D002747 ORTHO05D003069 2.9e-09 65.1 168 29.8
CiPaw.01G120100 Carya illinoinensis HOM05D002747 ORTHO05D003069 3.8e-09 64.7 168 31.5
Nitab4.5_0000676g0100 Nicotiana tabacum HOM05D002747 ORTHO05D003069 3.8e-09 64.7 169 29.6
Nitab4.5_0000850g0120 Nicotiana tabacum HOM05D002747 ORTHO05D003069 3.8e-09 64.7 169 29.6
CSS0015960 Camellia sinensis var. sinensis HOM05D002747 ORTHO05D003069 5.0e-09 64.3 170 31.8
Sabra02G0186000 Salix brachista HOM05D002747 ORTHO05D003069 5.0e-09 64.3 171 29.8
SalBow3G3614 Salvia bowleyana HOM05D002747 ORTHO05D003069 5.0e-09 64.3 92 39.1
Duzib133G0088 Durio zibethinus HOM05D002747 ORTHO05D003069 8.5e-09 63.5 171 29.2
Glyma.08G112000 Glycine max HOM05D002747 ORTHO05D003069 8.5e-09 63.5 170 30.6
Lsat_1_v5_gn_1_72020 Lactuca sativa HOM05D002747 ORTHO05D002872 8.5e-09 63.5 92 40.2
Manes.03G146600 Manihot esculenta HOM05D002747 ORTHO05D003069 8.5e-09 63.5 169 30.2
Carub.0001s0409 Capsella rubella HOM05D002747 ORTHO05D003069 1.1e-08 63.2 92 39.1
CARHR004240 Cardamine hirsuta HOM05D002747 ORTHO05D003069 1.1e-08 63.2 92 39.1
Cpa.g.sc8.133 Carica papaya HOM05D002747 ORTHO05D003069 1.1e-08 63.2 92 41.3
Glyma.05G154200 Glycine max HOM05D002747 ORTHO05D003069 1.1e-08 63.2 170 30.0
Lj3C408G1 Lonicera japonica HOM05D002747 ORTHO05D003069 1.5e-08 62.8 113 37.2
Manes.12G046400 Manihot esculenta HOM05D002747 ORTHO05D003069 1.5e-08 62.8 170 30.6
Potri.017G056900 Populus trichocarpa HOM05D002747 ORTHO05D003069 1.5e-08 62.8 168 31.0
Sp2g19100 Schrenkiella parvula HOM05D002747 ORTHO05D003069 1.5e-08 62.8 173 30.1
AL1G14570 Arabidopsis lyrata HOM05D002747 ORTHO05D003069 1.9e-08 62.4 171 29.8
CDE05G0937 Ceratophyllum demersum HOM05D002747 ORTHO05D003069 1.9e-08 62.4 169 29.6
Hund24396 Selenicereus undatus HOM05D002747 ORTHO05D003069 1.9e-08 62.4 168 29.8
Dinv12667 Davidia involucrata HOM05D002747 ORTHO05D003069 2.5e-08 62.0 148 32.4
Prupe.1G010500 Prunus persica HOM05D002747 ORTHO05D003069 2.5e-08 62.0 92 40.2
Thecc.01G222600 Theobroma cacao HOM05D002747 ORTHO05D003069 2.5e-08 62.0 92 41.3
vmacro15549 Vaccinium macrocarpon HOM05D002747 ORTHO05D003069 2.5e-08 62.0 171 29.8
PGR044G2315 Punica granatum HOM05D002747 ORTHO05D003069 3.2e-08 61.6 171 30.4
TPR.G11870 Trifolium pratense HOM05D002747 ORTHO05D003069 3.2e-08 61.6 168 31.0
Aa31LG1G19860 Aethionema arabicum HOM05D002747 ORTHO05D003069 5.5e-08 60.8 169 29.0
A06p38970 Brassica napus HOM05D002747 ORTHO05D003069 5.5e-08 60.8 173 30.1
COL.COLO4_15646 Corchorus olitorius HOM05D002747 ORTHO05D003069 5.5e-08 60.8 169 29.6
PSO170G5398 Papaver somniferum HOM05D002747 ORTHO05D003069 5.5e-08 60.8 171 28.7
PSO357G0187 Papaver somniferum HOM05D002747 ORTHO05D003069 5.5e-08 60.8 171 28.7
AL8G21770 Arabidopsis lyrata HOM05D002747 ORTHO05D003069 7.2e-08 60.5 173 30.1
AT1G04850 Arabidopsis thaliana HOM05D002747 ORTHO05D003069 7.2e-08 60.5 171 29.2
CANSAT01G0798 Cannabis sativa HOM05D002747 ORTHO05D003069 7.2e-08 60.5 169 30.8
Ca_17967_v3 Cicer arietinum L. HOM05D002747 ORTHO05D003069 7.2e-08 60.5 170 28.8
Potri.001G316400 Populus trichocarpa HOM05D002747 ORTHO05D003069 7.2e-08 60.5 169 30.8
SEGI_05435 Sequoiadendron giganteum HOM05D002747 ORTHO05D003069 7.2e-08 60.5 170 29.4
GSVIVG01003278001 Vitis vinifera HOM05D002747 ORTHO05D003069 7.2e-08 60.5 169 30.8
CiPaw.04G104400 Carya illinoinensis HOM05D002747 ORTHO05D003069 9.4e-08 60.1 92 40.2
HanXRQChr10g0310071 Helianthus annuus HOM05D002747 ORTHO05D003069 9.4e-08 60.1 92 38.0
Hma1.2p1_0187F.1_g082360 Hydrangea macrophylla HOM05D002747 ORTHO05D003069 1.2e-07 59.7 91 36.3
COL.COLO4_20167 Corchorus olitorius HOM05D002747 ORTHO05D003069 1.6e-07 59.3 101 36.6
Hund18420 Selenicereus undatus HOM05D002747 ORTHO05D003069 1.6e-07 59.3 171 29.8
BraA06t26811Z Brassica rapa HOM05D002747 ORTHO05D003069 2.1e-07 58.9 173 29.5
CANSAT01G2415 Cannabis sativa HOM05D002747 ORTHO05D003069 2.1e-07 58.9 169 30.2
MD13G1284100 Malus domestica HOM05D002747 ORTHO05D003069 2.1e-07 58.9 92 39.1
Medtr8g013030 Medicago truncatula HOM05D002747 ORTHO05D003069 2.1e-07 58.9 92 40.2
Os02g0504500 Oryza sativa ssp. japonica HOM05D002747 ORTHO05D003069 2.1e-07 58.9 170 28.8
TWI18G0343 Tripterygium wilfordii HOM05D002747 ORTHO05D003069 2.7e-07 58.5 130 33.1
Gohir.D02G114300 Gossypium hirsutum HOM05D002747 ORTHO05D003069 3.6e-07 58.2 170 29.4
Gorai.005G130000 Gossypium raimondii HOM05D002747 ORTHO05D003069 3.6e-07 58.2 170 29.4
Phvul.010G020300 Phaseolus vulgaris HOM05D002747 ORTHO05D003069 3.6e-07 58.2 170 31.8
CSS0022664 Camellia sinensis var. sinensis HOM05D002747 ORTHO05D003069 4.7e-07 57.8 184 28.8
Lj3g0012882 Lotus japonicus HOM05D002747 ORTHO05D003069 8.0e-07 57.0 95 37.9
C07p39360 Brassica napus HOM05D002747 ORTHO05D003069 2.3e-06 55.5 168 29.2
Carub.0008s0843 Capsella rubella HOM05D002747 ORTHO05D003069 2.3e-06 55.5 87 39.1
CAN.G1333.12 Capsicum annuum HOM05D002747 ORTHO05D003069 2.3e-06 55.5 89 34.8
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 2.3e-06 55.5 93 37.6
MELO3C004086.2 Cucumis melo HOM05D002747 ORTHO05D003069 3.0e-06 55.1 92 40.2
Thhalv10004673m.g Eutrema salsugineum HOM05D002747 ORTHO05D003069 3.0e-06 55.1 174 27.6
Ah.08g214490 Amaranthus hybridus HOM05D002747 ORTHO05D003069 4.0e-06 54.7 90 35.6
BolC7t44456H Brassica oleracea HOM05D002747 ORTHO05D003069 4.0e-06 54.7 170 28.8
arahy.Tifrunner.gnm1.ann1.LZLC15 Arachis hypogaea HOM05D002747 ORTHO05D003069 5.2e-06 54.3 111 34.2
EL10Ac7g17875 Beta vulgaris HOM05D002747 ORTHO05D003069 5.2e-06 54.3 174 26.4
CsaV3_2G007990 Cucumis sativus L. HOM05D002747 ORTHO05D003069 5.2e-06 54.3 93 39.8
BcaC06g30767 Brassica carinata HOM05D002747 ORTHO05D003069 6.8e-06 53.9 162 29.0
Psat4g200400 Pisum sativum HOM05D002747 ORTHO05D003069 6.8e-06 53.9 85 37.6
Aa31sc37G10 Aethionema arabicum HOM05D002747 ORTHO05D003069 8.8e-06 53.5 164 30.5
CBR_g685 Chara braunii HOM05D002747 ORTHO05D003069 8.8e-06 53.5 91 33.0
Zm00001eb181030 Zea mays HOM05D002747 ORTHO05D003069 8.8e-06 53.5 170 27.6


User provided reference genes

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