Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0284361 Rosa chinensis HOM05D007399 ORTHO05D009341 5.8e-118 427.6 213 100.0
FvH4_2g18740 Fragaria vesca HOM05D007399 ORTHO05D009341 5.1e-98 361.3 215 86.0
FAN15G3119 Fragaria x ananassa HOM05D007399 ORTHO05D009341 2.6e-94 349.0 215 84.7
FAN27G2185 Fragaria x ananassa HOM05D007399 ORTHO05D009341 7.6e-94 347.4 215 83.3
FAN24G1833 Fragaria x ananassa HOM05D007399 ORTHO05D009341 4.6e-91 338.2 215 82.8
Prupe.8G200700 Prunus persica HOM05D007399 ORTHO05D009341 1.4e-60 236.9 219 63.0
MD05G1173200 Malus domestica HOM05D007399 ORTHO05D009341 1.5e-57 226.9 218 61.0
QL09p052198 Quercus lobata HOM05D007399 ORTHO05D009341 3.6e-51 205.7 221 55.7
Thecc.01G222700 Theobroma cacao HOM05D007399 ORTHO05D009341 1.8e-47 193.4 235 51.9
Manes.13G046300 Manihot esculenta HOM05D007399 ORTHO05D009341 4.7e-43 178.7 230 48.3
Phvul.010G020400 Phaseolus vulgaris HOM05D007399 ORTHO05D009341 1.8e-42 176.8 223 50.2
Lj3g0000647 Lotus japonicus HOM05D007399 ORTHO05D009341 6.8e-42 174.9 216 49.1
TAR362G0473 Trochodendron aralioides HOM05D007399 ORTHO05D009341 6.8e-42 174.9 245 46.1
Ciclev10022115m.g Citrus clementina HOM05D007399 ORTHO05D009341 8.8e-42 174.5 227 51.1
Gohir.A11G139200 Gossypium hirsutum HOM05D007399 ORTHO05D009341 2.6e-41 172.9 237 48.1
Dinv19187 Davidia involucrata HOM05D007399 ORTHO05D009341 4.4e-41 172.2 233 47.6
TWI18G0746 Tripterygium wilfordii HOM05D007399 ORTHO05D009341 1.3e-40 170.6 215 50.7
Cc01_g16850 Coffea canephora HOM05D007399 ORTHO05D009341 1.7e-40 170.2 229 45.9
Duzib133G1013 Durio zibethinus HOM05D007399 ORTHO05D009341 1.7e-40 170.2 209 49.3
COL.COLO4_15647 Corchorus olitorius HOM05D007399 ORTHO05D009341 3.7e-40 169.1 217 51.2
Glyma.16G101000 Glycine max HOM05D007399 ORTHO05D009341 3.7e-40 169.1 218 50.0
Gohir.D11G145400 Gossypium hirsutum HOM05D007399 ORTHO05D009341 6.3e-40 168.3 237 46.4
QL09p053453 Quercus lobata HOM05D007399 ORTHO05D009341 1.8e-39 166.8 225 47.1
PGR083G1511 Punica granatum HOM05D007399 ORTHO05D009341 4.1e-39 165.6 219 48.9
Gorai.007G155900 Gossypium raimondii HOM05D007399 ORTHO05D009341 2.0e-38 163.3 244 45.1
Haze_24850 Corylus avellana HOM05D007399 ORTHO05D009341 2.7e-38 162.9 173 57.8
ECA248G2789 Erigeron canadensis HOM05D007399 ORTHO05D009341 5.9e-38 161.8 216 49.1
THA.LOC104802666 Tarenaya hassleriana HOM05D007399 ORTHO05D009341 7.7e-38 161.4 218 48.2
Peaxi162Scf00398g00810 Petunia axillaris HOM05D007399 ORTHO05D009341 1.0e-37 161.0 220 45.5
Aa31LG5G17710 Aethionema arabicum HOM05D007399 ORTHO05D009341 1.3e-37 160.6 209 49.8
VMungo0331G1622 Vigna mungo HOM05D007399 ORTHO05D009341 1.7e-37 160.2 209 47.4
GSVIVG01003279001 Vitis vinifera HOM05D007399 ORTHO05D009341 1.7e-37 160.2 225 48.9
Medtr8g013040 Medicago truncatula HOM05D007399 ORTHO05D009341 5.0e-37 158.7 228 44.3
Lsat_1_v5_gn_5_180581 Lactuca sativa HOM05D007399 ORTHO05D009341 1.5e-36 157.1 221 49.3
A05p41060 Brassica napus HOM05D007399 ORTHO05D009341 1.9e-36 156.8 215 48.4
BraA05t22833Z Brassica rapa HOM05D007399 ORTHO05D009341 1.9e-36 156.8 215 48.4
Eucgr.H00781 Eucalyptus grandis HOM05D007399 ORTHO05D009341 1.9e-36 156.8 224 45.1
Nn1g07919 Nelumbo nucifera HOM05D007399 ORTHO05D009341 1.9e-36 156.8 164 56.7
C05p60230 Brassica napus HOM05D007399 ORTHO05D009341 3.2e-36 156.0 215 48.8
BolC5t34673H Brassica oleracea HOM05D007399 ORTHO05D009341 3.2e-36 156.0 215 48.4
Cfa002599 Carpinus fangiana HOM05D007399 ORTHO05D009341 5.5e-36 155.2 206 48.5
BcaC05g29843 Brassica carinata HOM05D007399 ORTHO05D009341 4.7e-35 152.1 215 48.4
Nitab4.5_0000045g0320 Nicotiana tabacum HOM05D007399 ORTHO05D009341 4.7e-35 152.1 215 45.1
Lj2A1128G40 Lonicera japonica HOM05D007399 ORTHO05D009341 8.0e-35 151.4 201 46.3
Nitab4.5_0000345g0070 Nicotiana tabacum HOM05D007399 ORTHO05D009341 1.4e-34 150.6 211 45.5
HanXRQChr01g0015211 Helianthus annuus HOM05D007399 ORTHO05D009341 1.8e-34 150.2 210 50.0
TPR.G17137 Trifolium pratense HOM05D007399 ORTHO05D009341 2.3e-34 149.8 221 44.8
Potri.002G244400 Populus trichocarpa HOM05D007399 ORTHO05D009341 5.2e-34 148.7 194 50.5
CiPaw.03G147600 Carya illinoinensis HOM05D007399 ORTHO05D009341 6.8e-34 148.3 163 53.4
ClCG09G008880 Citrullus lanatus HOM05D007399 ORTHO05D009341 6.8e-34 148.3 232 43.5
Rhsim01G0254900 Rhododendron simsii HOM05D007399 ORTHO05D009341 3.4e-33 146.0 104 71.2
Oeu037384.1 Olea europaea HOM05D007399 ORTHO05D009341 5.7e-33 145.2 100 74.0
Hund05568 Selenicereus undatus HOM05D007399 ORTHO05D009341 7.5e-33 144.8 230 39.6
AT3G07150 Arabidopsis thaliana HOM05D007399 ORTHO05D009341 1.7e-32 143.7 209 47.4
Lalb_Chr12g0209951 Lupinus albus HOM05D007399 ORTHO05D009341 2.2e-32 143.3 174 47.1
Oeu037382.1 Olea europaea HOM05D007399 ORTHO05D009341 2.8e-32 142.9 160 53.1
Psat4g199960 Pisum sativum HOM05D007399 ORTHO05D009341 4.9e-32 142.1 224 43.3
QL09p053062 Quercus lobata HOM05D007399 ORTHO05D009341 4.9e-32 142.1 129 61.2
CAN.G3.2 Capsicum annuum HOM05D007399 ORTHO05D009341 6.3e-32 141.7 213 44.6
Sabra02G0185900 Salix brachista HOM05D007399 ORTHO05D009341 6.3e-32 141.7 167 52.1
BcaC05g29751 Brassica carinata HOM05D007399 ORTHO05D009341 1.1e-31 141.0 217 46.1
Ah.08g214480 Amaranthus hybridus HOM05D007399 ORTHO05D009341 1.8e-31 140.2 219 42.9
arahy.Tifrunner.gnm1.ann1.5JJB2W Arachis hypogaea HOM05D007399 ORTHO05D009341 4.1e-31 139.0 264 38.3
Thhalv10022223m.g Eutrema salsugineum HOM05D007399 ORTHO05D009341 4.1e-31 139.0 166 51.8
Carub.0003s0667 Capsella rubella HOM05D007399 ORTHO05D009341 5.4e-31 138.7 208 45.7
AL3G18400 Arabidopsis lyrata HOM05D007399 ORTHO05D009341 7.0e-31 138.3 209 45.9
AUR62001112 Chenopodium quinoa HOM05D007399 ORTHO05D009341 9.2e-31 137.9 200 44.5
Migut.D02494 Erythranthe guttata HOM05D007399 ORTHO05D009341 9.2e-31 137.9 221 41.2
PSO170G3887 Papaver somniferum HOM05D007399 ORTHO05D009341 9.2e-31 137.9 246 37.4
Cpa.g.sc8.134 Carica papaya HOM05D007399 ORTHO05D009341 1.2e-30 137.5 130 57.7
Sp3g06090 Schrenkiella parvula HOM05D007399 ORTHO05D009341 2.7e-30 136.3 216 45.4
PSO357G0666 Papaver somniferum HOM05D007399 ORTHO05D009341 3.5e-30 136.0 249 37.3
Atru.chr6.1505 Acer truncatum HOM05D007399 ORTHO05D009341 4.5e-30 135.6 102 70.6
Actinidia09475 Actinidia chinensis HOM05D007399 ORTHO05D009341 1.3e-29 134.0 190 47.4
arahy.Tifrunner.gnm1.ann1.YE6SLX Arachis hypogaea HOM05D007399 ORTHO05D009341 2.3e-29 133.3 235 40.9
AUR62008936 Chenopodium quinoa HOM05D007399 ORTHO05D009341 1.1e-28 131.0 188 46.8
CsaV3_7G026010 Cucumis sativus L. HOM05D007399 ORTHO05D009341 1.9e-28 130.2 231 42.0
Sed0009642 Sechium edule HOM05D007399 ORTHO05D009341 5.6e-28 128.6 234 42.3
Solyc09g059950.3 Solanum lycopersicum HOM05D007399 ORTHO05D009341 5.6e-28 128.6 228 39.0
Sopen09g023130 Solanum pennellii HOM05D007399 ORTHO05D009341 7.3e-28 128.3 228 39.0
MELO3C021053.2 Cucumis melo HOM05D007399 ORTHO05D009341 9.5e-28 127.9 232 41.8
CSS0020487 Camellia sinensis var. sinensis HOM05D007399 ORTHO05D009341 1.6e-27 127.1 99 64.6
DCAR_000523 Daucus carota HOM05D007399 ORTHO05D009341 1.6e-27 127.1 177 44.6
CARHR081750 Cardamine hirsuta HOM05D007399 ORTHO05D009341 2.1e-27 126.7 158 51.3
PGSC0003DMG401023104 Solanum tuberosum HOM05D007399 ORTHO05D009341 3.6e-27 125.9 229 38.9
SalBow6G3187 Salvia bowleyana HOM05D007399 ORTHO05D009341 4.7e-27 125.6 206 41.3
SalBow6G3685 Salvia bowleyana HOM05D007399 ORTHO05D009341 4.7e-27 125.6 206 41.3
EL10Ac7g17870 Beta vulgaris HOM05D007399 ORTHO05D009341 4.4e-25 119.0 109 54.1
SHI28622 Sapria himalayana HOM05D000002 ORTHO05D000001 4.9e-24 115.5 142 45.8
CDE06G2632 Ceratophyllum demersum HOM05D007399 ORTHO05D009341 6.4e-24 115.2 90 66.7
Sc24g0003500 Simmondsia chinensis HOM05D007399 ORTHO05D009341 7.0e-23 111.7 135 46.7
CANSAT01G2134 Cannabis sativa HOM05D007399 ORTHO05D009341 3.0e-21 106.3 218 37.2
CANSAT01G1231 Cannabis sativa HOM05D007399 ORTHO05D009341 3.3e-20 102.8 137 44.5
Actinidia23717 Actinidia chinensis HOM05D007399 ORTHO05D009341 4.3e-20 102.4 234 37.2
CANSAT01G0413 Cannabis sativa HOM05D007399 ORTHO05D009341 9.5e-20 101.3 135 44.4
CANSAT01G2481 Cannabis sativa HOM05D007399 ORTHO05D009341 4.7e-19 99.0 105 49.5
Hund20426 Selenicereus undatus HOM05D007399 ORTHO05D009341 1.1e-15 87.8 84 51.2
SEGI_10803 Sequoiadendron giganteum HOM05D007399 ORTHO05D009341 9.2e-15 84.7 194 34.0
ATR0609G108 Amborella trichopoda HOM05D007399 ORTHO05D009341 2.0e-14 83.6 135 37.8
HPP92_011779 Vanilla planifolia HOM05D007399 ORTHO05D009341 6.0e-14 82.0 202 30.2
Os01g0918400 Oryza sativa ssp. japonica HOM05D007399 ORTHO05D009341 5.0e-13 79.0 64 54.7
Aqoxy5G00011 Aquilegia oxysepala HOM05D007399 ORTHO05D009341 2.5e-12 76.6 180 33.9
Zm00001eb364650 Zea mays HOM05D007399 ORTHO05D009341 2.3e-10 70.1 90 41.1


User provided reference genes

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