Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 0.0e+00 1127.5 596 100.0
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 0.0e+00 1094.3 600 96.3
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 0.0e+00 1094.0 600 96.3
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 0.0e+00 1094.0 600 96.3
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 0.0e+00 1089.3 598 96.2
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 5.0e-284 980.7 594 85.0
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 8.5e-284 979.9 594 84.7
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 4.6e-282 974.2 598 83.9
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 7.4e-280 966.8 595 83.5
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 3.7e-279 964.5 595 83.5
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 8.2e-279 963.4 598 83.9
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 1.0e-276 956.4 590 84.4
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.3e-276 956.1 598 81.3
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 5.5e-275 950.7 599 82.8
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 6.1e-274 947.2 598 81.1
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 2.0e-272 942.2 597 82.4
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 7.4e-272 940.3 599 82.3
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 2.2e-271 938.7 598 80.8
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 2.2e-271 938.7 598 82.3
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 2.8e-271 938.3 598 81.9
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 3.7e-271 937.9 598 81.8
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 8.2e-271 936.8 601 80.4
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 8.2e-271 936.8 598 82.3
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 2.4e-270 935.3 598 79.4
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 3.1e-270 934.9 598 81.3
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 6.9e-270 933.7 598 81.9
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.2e-269 932.9 598 81.6
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 1.2e-266 922.9 598 81.3
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 5.7e-264 914.1 598 79.3
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 7.4e-264 913.7 598 79.8
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 1.7e-263 912.5 599 79.6
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 8.2e-263 910.2 599 78.0
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 2.4e-262 908.7 599 79.6
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 5.3e-262 907.5 610 77.5
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.0e-261 905.6 601 78.0
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.6e-261 905.2 601 78.0
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 4.5e-261 904.4 599 80.0
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.0e-260 901.0 603 77.6
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 6.5e-260 900.6 596 78.5
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 6.5e-260 900.6 596 78.5
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 1.5e-259 899.4 601 77.5
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 3.2e-259 898.3 592 77.0
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 3.2e-259 898.3 599 76.6
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 6.1e-258 894.0 598 77.8
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 6.1e-258 894.0 602 77.7
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 1.0e-257 893.3 608 76.5
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 1.4e-257 892.9 596 76.7
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 1.8e-257 892.5 599 76.1
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.0e-257 891.7 610 73.4
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 4.0e-257 891.3 610 73.3
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 4.0e-257 891.3 601 77.0
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 1.3e-255 886.3 598 76.6
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 3.7e-255 884.8 598 76.1
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 6.3e-255 884.0 598 76.4
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 8.2e-255 883.6 598 76.1
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.8e-254 882.5 598 75.8
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.8e-254 882.5 598 76.6
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 3.1e-254 881.7 610 77.0
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.7e-253 878.6 599 76.5
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 7.7e-253 877.1 598 76.3
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 1.3e-252 876.3 598 75.6
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 1.7e-252 875.9 611 75.5
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 7.2e-251 870.5 598 75.4
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 9.4e-251 870.2 598 74.4
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 2.7e-250 868.6 600 73.8
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 2.7e-250 868.6 600 73.8
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 2.7e-250 868.6 596 75.2
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 6.1e-250 867.5 602 74.3
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 5.2e-249 864.4 604 74.2
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 5.2e-249 864.4 600 74.8
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.2e-248 863.2 597 74.4
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.2e-248 863.2 597 74.4
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.2e-248 863.2 597 74.4
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.2e-248 863.2 603 75.0
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 3.7e-247 858.2 610 73.9
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 8.3e-247 857.1 597 74.2
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.1e-246 856.7 596 73.8
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 2.4e-246 855.5 596 73.7
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 4.1e-246 854.7 609 72.7
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 1.0e-244 850.1 599 73.6
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 2.3e-244 849.0 600 74.0
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.9e-244 848.6 603 73.6
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 8.6e-244 847.0 603 73.5
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 8.6e-244 847.0 589 74.7
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 9.5e-243 843.6 603 74.5
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 2.8e-242 842.0 601 71.9
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 3.6e-242 841.6 596 74.2
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 4.7e-242 841.3 596 74.2
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 1.0e-241 840.1 601 71.4
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 1.8e-241 839.3 606 72.9
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 8.9e-241 837.0 616 71.6
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 4.9e-239 831.2 595 72.6
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 6.3e-239 830.9 610 70.8
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 5.4e-238 827.8 599 71.6
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 1.0e-236 823.5 597 71.7
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 1.7e-236 822.8 598 71.2
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 4.3e-235 818.1 595 71.4
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 1.4e-233 813.1 601 71.4
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 1.5e-232 809.7 602 69.9
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 2.6e-232 808.9 605 69.6
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 1.3e-231 806.6 595 70.9
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 4.9e-231 804.7 598 70.1
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 1.9e-230 802.7 596 68.3
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 3.2e-230 802.0 599 71.6
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 7.8e-229 797.3 547 74.8
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 1.3e-228 796.6 550 72.0
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 2.1e-226 789.3 607 69.7
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 9.8e-224 780.4 601 70.2
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 3.7e-223 778.5 645 65.7
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 1.7e-220 769.6 599 69.3
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.6e-220 767.7 603 68.5
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.5e-219 766.5 612 67.3
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 4.3e-219 765.0 525 76.0
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 6.2e-218 761.1 612 66.8
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 6.0e-213 744.6 619 63.8
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 1.3e-212 743.4 596 66.9
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 1.2e-208 730.3 598 64.9
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 2.2e-207 726.1 596 65.4
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.1e-202 709.5 565 66.7
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 8.4e-191 671.0 477 73.8
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.1e-177 625.9 599 59.9
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 8.4e-175 617.8 496 68.1
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.7e-170 602.4 517 64.8
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 1.1e-155 554.3 602 51.7
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 4.1e-153 545.8 604 51.7
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 1.6e-149 533.9 600 52.7
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 6.5e-135 485.3 598 50.5
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 4.0e-132 476.1 623 44.5
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 8.6e-127 458.4 592 46.5
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 2.2e-90 337.4 209 77.0
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.9e-86 324.3 243 65.0
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 9.3e-81 305.4 325 54.5
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 2.4e-76 290.8 624 35.4
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 5.4e-73 279.6 238 69.7
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.2e-67 261.9 270 56.3
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 1.3e-58 231.9 589 29.5
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 6.9e-52 209.5 148 70.9
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.1e-48 198.0 151 66.2
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.2e-32 145.6 201 44.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 1.4e-31 142.1 98 69.4
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 4.4e-30 137.1 624 25.3
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 5.2e-23 113.6 212 50.5
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 6.8e-23 113.2 77 71.4
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 7.5e-22 109.8 79 63.3
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 6.3e-21 106.7 79 62.0
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 1.5e-17 95.5 121 41.3
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 5.2e-15 87.0 90 48.9
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.5e-11 74.3 59 64.4
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 1.8e-07 62.0 98 40.8


User provided reference genes

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