Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0284071 Rosa chinensis HOM05D008218 ORTHO05D010347 2.0e-18 94.7 48 100.0
Prupe.8G198600 Prunus persica HOM05D008218 ORTHO05D010347 1.7e-17 91.7 48 95.8
Hma1.2p1_0149F.1_g066410 Hydrangea macrophylla HOM05D008218 ORTHO05D010347 4.9e-17 90.1 48 95.8
TWI36G0894 Tripterygium wilfordii HOM05D008218 ORTHO05D010347 8.4e-17 89.4 48 93.8
Phvul.008G131550 Phaseolus vulgaris HOM05D008218 ORTHO05D010347 2.4e-16 87.8 48 91.7
FAN27G2427 Fragaria x ananassa HOM05D008218 ORTHO05D010347 1.2e-15 85.5 43 97.7
FAN15G3347 Fragaria x ananassa HOM05D008218 ORTHO05D010347 2.7e-15 84.3 43 95.3
Solyc06g063390.3 Solanum lycopersicum HOM05D008218 ORTHO05D010347 1.0e-14 82.4 49 87.8
FAN24G2161 Fragaria x ananassa HOM05D008218 ORTHO05D010347 1.8e-14 81.6 68 69.1
Lsat_1_v5_gn_2_120021 Lactuca sativa HOM05D009582 ORTHO05D010347 1.8e-14 81.6 47 89.4
Gohir.A07G161100 Gossypium hirsutum HOM05D008218 ORTHO05D010347 2.3e-14 81.3 48 89.6
Gohir.D07G164600 Gossypium hirsutum HOM05D008218 ORTHO05D010347 2.3e-14 81.3 48 89.6
Potri.002G246300 Populus trichocarpa HOM05D008218 ORTHO05D010347 2.3e-14 81.3 48 89.6
TWI18G1398 Tripterygium wilfordii HOM05D008218 ORTHO05D010347 1.1e-13 79.0 48 85.4
COL.COLO4_08652 Corchorus olitorius HOM05D008218 ORTHO05D010347 1.9e-13 78.2 48 85.4
Solyc06g063400.3 Solanum lycopersicum HOM05D008218 ORTHO05D010347 2.5e-13 77.8 49 83.7
TWI75G0809 Tripterygium wilfordii HOM05D008218 ORTHO05D010347 2.5e-13 77.8 48 85.4
Gohir.D11G145833 Gossypium hirsutum HOM05D008218 ORTHO05D010347 4.3e-13 77.0 48 85.4
Thecc.01G219400 Theobroma cacao HOM05D008218 ORTHO05D010347 4.3e-13 77.0 48 85.4
CiPaw.13G048900 Carya illinoinensis HOM05D008218 ORTHO05D010347 5.6e-13 76.6 48 83.3
PGSC0003DMG400007753 Solanum tuberosum HOM05D008218 ORTHO05D010347 5.6e-13 76.6 44 88.6
Mapoly0087s0005 Marchantia polymorpha HOM05D008218 ORTHO05D010347 1.6e-12 75.1 48 79.2
Duzib211G0660 Durio zibethinus HOM05D008218 ORTHO05D010347 4.8e-12 73.6 48 81.2
AL3G18510 Arabidopsis lyrata HOM05D008218 ORTHO05D010347 6.2e-12 73.2 48 81.2
AT3G07230 Arabidopsis thaliana HOM05D008218 ORTHO05D010347 6.2e-12 73.2 48 81.2
Manes.12G047600 Manihot esculenta HOM05D008218 ORTHO05D010347 6.2e-12 73.2 48 79.2
Thhalv10021897m.g Eutrema salsugineum HOM05D008218 ORTHO05D010347 1.4e-11 72.0 48 79.2
CsaV3_3G030050 Cucumis sativus L. HOM05D008218 ORTHO05D010347 1.8e-11 71.6 48 79.2
PSO017G0111 Papaver somniferum HOM05D008218 ORTHO05D010347 1.8e-11 71.6 48 83.3
PSO170G1121 Papaver somniferum HOM05D008218 ORTHO05D010347 1.8e-11 71.6 48 83.3
PSO170G3918 Papaver somniferum HOM05D008218 ORTHO05D010347 1.8e-11 71.6 48 83.3
Gohir.A07G093000 Gossypium hirsutum HOM05D008218 ORTHO05D010347 2.4e-11 71.2 48 81.2
Thecc.05G251000 Theobroma cacao HOM05D008218 ORTHO05D010347 2.4e-11 71.2 48 79.2
CiPaw.14G038700 Carya illinoinensis HOM05D008218 ORTHO05D010347 3.1e-11 70.9 48 79.2
Lalb_Chr19g0125871 Lupinus albus HOM05D008218 ORTHO05D010347 3.1e-11 70.9 48 77.1
Nitab4.5_0013864g0040 Nicotiana tabacum HOM05D008218 ORTHO05D010347 3.1e-11 70.9 47 76.6
Carub.0003s0676 Capsella rubella HOM05D008218 ORTHO05D010347 5.3e-11 70.1 48 79.2
Nn7g36571 Nelumbo nucifera HOM05D008218 ORTHO05D010347 5.3e-11 70.1 48 77.1
Potri.014G191300 Populus trichocarpa HOM05D008218 ORTHO05D010347 5.3e-11 70.1 48 77.1
THA.LOC104818972 Tarenaya hassleriana HOM05D008218 ORTHO05D010347 5.3e-11 70.1 48 79.2
THA.LOC104822489 Tarenaya hassleriana HOM05D008218 ORTHO05D010347 5.3e-11 70.1 48 79.2
PSO357G0222 Papaver somniferum HOM05D008218 ORTHO05D010347 6.9e-11 69.7 48 81.2
PGR044G2382 Punica granatum HOM05D008218 ORTHO05D010347 6.9e-11 69.7 48 79.2
Duzib133G0946 Durio zibethinus HOM05D008218 ORTHO05D010347 9.0e-11 69.3 48 79.2
Manes.13G049700 Manihot esculenta HOM05D008218 ORTHO05D010347 9.0e-11 69.3 48 79.2
Os12g0405700 Oryza sativa ssp. japonica HOM05D008218 ORTHO05D010347 9.0e-11 69.3 49 81.6
CARHR081880 Cardamine hirsuta HOM05D008218 ORTHO05D010347 1.2e-10 68.9 48 77.1
Hma1.2p1_0226F.1_g095360 Hydrangea macrophylla HOM05D008218 ORTHO05D010347 1.2e-10 68.9 48 79.2
EL10Ac7g17908 Beta vulgaris HOM05D008218 ORTHO05D010347 2.0e-10 68.2 47 76.6
CAN.G874.7 Capsicum annuum HOM05D008218 ORTHO05D010347 2.0e-10 68.2 48 77.1
Solyc06g083340.3 Solanum lycopersicum HOM05D008218 ORTHO05D010347 2.0e-10 68.2 48 77.1
PGSC0003DMG400020101 Solanum tuberosum HOM05D008218 ORTHO05D010347 2.0e-10 68.2 48 77.1
Aa31LG5G17820 Aethionema arabicum HOM05D008218 ORTHO05D010347 4.5e-10 67.0 48 75.0
Migut.D02504 Erythranthe guttata HOM05D008218 ORTHO05D010347 4.5e-10 67.0 48 77.1
Hund18437 Selenicereus undatus HOM05D008218 ORTHO05D010347 7.6e-10 66.2 48 75.0
Gohir.A11G139700 Gossypium hirsutum HOM05D008218 ORTHO05D010347 1.7e-09 65.1 48 81.2
Pp3c20_8300 Physcomitrium patens HOM05D008218 ORTHO05D010347 1.4e-08 62.0 50 74.0
Glyma.08G348200 Glycine max HOM05D008218 ORTHO05D010347 7.1e-08 59.7 48 68.8
Glyma.18G159800 Glycine max HOM05D008218 ORTHO05D010347 7.1e-08 59.7 48 68.8
MELO3C029169.2 Cucumis melo HOM05D008218 ORTHO05D010347 9.3e-08 59.3 43 74.4
Nitab4.5_0003020g0060 Nicotiana tabacum HOM05D008218 ORTHO05D010347 9.3e-08 59.3 31 90.3
A03p35150 Brassica napus HOM05D008218 ORTHO05D010347 2.7e-07 57.8 48 68.8
Pp3c23_15470 Physcomitrium patens HOM05D008218 ORTHO05D010347 2.7e-07 57.8 50 70.0
BcaC05g29851 Brassica carinata HOM05D003583 ORTHO05D004169 7.9e-07 56.2 48 68.8
BraA05t22826Z Brassica rapa HOM05D003583 ORTHO05D004169 1.8e-06 55.1 48 66.7


User provided reference genes

Program Settings