Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 3.9e-234 815.1 646 100.0
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 2.4e-167 593.2 571 92.3
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 4.6e-166 589.0 571 92.1
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 4.7e-163 578.9 571 91.2
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 8.9e-162 574.7 572 87.2
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 5.5e-95 352.8 592 46.8
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 3.1e-66 257.3 588 41.8
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 5.2e-61 240.0 581 39.1
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 8.3e-59 232.6 581 38.6
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 1.6e-54 218.4 585 36.2
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 4.6e-49 200.3 587 36.8
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 1.0e-48 199.1 583 36.2
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 2.3e-48 198.0 601 32.9
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 1.5e-47 195.3 582 36.6
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 6.2e-46 189.9 596 33.4
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 1.4e-45 188.7 598 36.8
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 8.9e-45 186.0 581 34.6
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 3.4e-44 184.1 609 34.6
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 1.3e-43 182.2 594 35.0
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 5.4e-42 176.8 579 32.5
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 4.6e-41 173.7 604 33.6
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 6.6e-40 169.9 598 33.3
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 1.5e-39 168.7 589 32.8
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 3.3e-39 167.5 225 53.3
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 9.5e-39 166.0 224 50.0
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 4.7e-38 163.7 231 53.7
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 6.2e-38 163.3 227 49.3
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 5.2e-37 160.2 141 61.0
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 5.8e-36 156.8 230 48.7
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 5.8e-36 156.8 230 48.7
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 1.3e-35 155.6 230 55.7
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 2.9e-35 154.5 608 32.7
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 6.4e-35 153.3 603 33.8
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 8.3e-35 152.9 580 31.6
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.9e-34 151.8 560 30.2
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.4e-34 151.4 578 31.1
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 3.2e-34 151.0 221 52.0
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 4.1e-34 150.6 212 49.1
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 7.1e-34 149.8 223 45.7
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 7.1e-34 149.8 597 30.2
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 2.7e-33 147.9 142 74.6
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 3.5e-33 147.5 175 51.4
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 1.3e-32 145.6 231 48.1
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 3.9e-32 144.1 136 70.6
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 5.1e-32 143.7 219 46.1
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.3e-31 141.0 212 50.9
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 3.3e-31 141.0 216 47.7
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 3.3e-31 141.0 135 63.7
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 7.3e-31 139.8 140 69.3
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 1.2e-30 139.0 147 67.3
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 1.6e-30 138.7 580 30.0
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.1e-30 138.3 212 54.7
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 4.7e-30 137.1 136 55.9
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 4.7e-30 137.1 136 56.6
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 4.7e-30 137.1 136 56.6
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.1e-29 136.0 128 65.6
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.1e-29 136.0 580 30.7
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.1e-29 136.0 219 50.2
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.4e-29 135.6 217 53.5
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 5.2e-29 133.7 129 63.6
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 5.2e-29 133.7 145 59.3
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 1.5e-28 132.1 577 30.8
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 2.0e-28 131.7 586 31.2
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 7.6e-28 129.8 137 62.0
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 1.3e-27 129.0 162 51.9
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 1.3e-27 129.0 583 26.6
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.7e-27 128.6 141 66.7
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.7e-27 128.6 222 40.1
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.7e-27 128.6 140 64.3
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 2.2e-27 128.3 233 45.5
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 3.8e-27 127.5 229 49.3
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 4.9e-27 127.1 214 37.4
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 6.4e-27 126.7 575 32.3
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 6.4e-27 126.7 567 31.9
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 8.4e-27 126.3 135 54.1
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.1e-26 125.9 556 29.1
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 1.4e-26 125.6 135 65.2
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 2.4e-26 124.8 211 51.7
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 5.4e-26 123.6 237 39.2
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 7.1e-26 123.2 591 30.6
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.6e-25 122.1 212 50.5
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 1.7e-24 118.6 164 54.3
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 2.3e-24 118.2 608 30.9
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.9e-24 117.5 131 46.6
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 5.1e-24 117.1 134 64.9
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.1e-24 117.1 131 46.6
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 6.6e-24 116.7 578 34.8
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 1.5e-23 115.5 596 30.0
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 2.5e-23 114.8 127 63.8
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 1.2e-22 112.5 594 29.6
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 1.2e-22 112.5 561 30.3
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 1.6e-22 112.1 164 57.3
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 2.1e-22 111.7 563 36.6
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 2.1e-22 111.7 226 46.0
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 2.8e-22 111.3 136 66.2
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 2.8e-22 111.3 553 28.8
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 4.7e-22 110.5 221 49.3
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 8.1e-22 109.8 223 49.3
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 8.1e-22 109.8 223 49.3
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.4e-21 109.0 131 53.4
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 1.8e-21 108.6 237 47.3
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 3.1e-21 107.8 227 38.3
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 6.9e-21 106.7 596 29.0
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 8.9e-21 106.3 596 29.0
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 8.9e-21 106.3 596 29.0
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 8.9e-21 106.3 236 42.4
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 1.5e-20 105.5 219 49.8
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 2.0e-20 105.1 167 47.3
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 3.4e-20 104.4 134 44.0
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 7.6e-20 103.2 159 47.2
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.9e-19 101.3 574 27.5
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 4.9e-19 100.5 125 68.0
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 4.9e-19 100.5 131 45.8
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 1.4e-18 99.0 142 59.9
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 1.9e-18 98.6 586 28.8
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 2.4e-18 98.2 131 47.3
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 4.2e-18 97.4 131 49.6
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 9.3e-18 96.3 561 45.3
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 1.2e-17 95.9 582 29.6
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 1.0e-16 92.8 521 27.1
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 1.3e-16 92.4 132 53.0
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 7.3e-15 86.7 142 40.8
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 4.0e-13 80.9 51 76.5
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 1.2e-12 79.3 127 50.4
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 2.6e-12 78.2 106 48.1
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 4.9e-11 73.9 130 56.9
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 1.1e-10 72.8 129 45.0
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 1.4e-10 72.4 52 71.2
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.6e-09 68.9 130 43.1
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 4.6e-09 67.4 135 52.6
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 2.3e-08 65.1 137 49.6
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.1e-07 62.8 128 41.4


User provided reference genes

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