Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0283441 Rosa chinensis HOM05D007131 ORTHO05D009026 8.3e-114 413.7 205 100.0
FvH4_2g18050 Fragaria vesca HOM05D007131 ORTHO05D009026 8.4e-98 360.5 210 88.1
FAN15G1265 Fragaria x ananassa HOM05D007131 ORTHO05D009026 1.2e-96 356.7 217 85.7
MD10G1154300 Malus domestica HOM05D007131 ORTHO05D009026 2.9e-90 335.5 209 82.3
MD05G1165000 Malus domestica HOM05D007131 ORTHO05D009026 1.3e-87 326.6 209 79.4
Prupe.8G193200 Prunus persica HOM05D007131 ORTHO05D009026 1.5e-86 323.2 209 77.0
FAN24G0325 Fragaria x ananassa HOM05D007131 ORTHO05D009026 2.3e-79 299.3 236 71.6
FAN27G0491 Fragaria x ananassa HOM05D007131 ORTHO05D009026 5.1e-79 298.1 235 71.5
Cfa010368 Carpinus fangiana HOM05D007131 ORTHO05D009026 4.9e-74 281.6 208 70.2
Haze_03320 Corylus avellana HOM05D007131 ORTHO05D009026 5.5e-73 278.1 222 67.1
Dinv22999 Davidia involucrata HOM05D007131 ORTHO05D009026 1.2e-72 276.9 202 68.3
Thecc.01G214300 Theobroma cacao HOM05D007131 ORTHO05D009026 1.8e-71 273.1 203 70.4
CiPaw.14G041500 Carya illinoinensis HOM05D007131 ORTHO05D009026 8.7e-71 270.8 215 67.0
Eucgr.H00746 Eucalyptus grandis HOM05D007131 ORTHO05D009026 8.7e-71 270.8 216 65.3
MELO3C015773.2 Cucumis melo HOM05D007131 ORTHO05D009026 1.5e-70 270.0 212 67.0
Actinidia23782 Actinidia chinensis HOM05D007131 ORTHO05D009026 2.5e-70 269.2 199 65.3
Hma1.2p1_1492F.1_g286770 Hydrangea macrophylla HOM05D007131 ORTHO05D009026 4.3e-70 268.5 210 65.7
CsaV3_7G027510 Cucumis sativus L. HOM05D007131 ORTHO05D009026 7.4e-70 267.7 212 66.5
Actinidia09448 Actinidia chinensis HOM05D007131 ORTHO05D009026 4.8e-69 265.0 203 65.0
ClCG09G007600 Citrullus lanatus HOM05D007131 ORTHO05D009026 4.8e-69 265.0 212 66.0
QL09p048363 Quercus lobata HOM05D007131 ORTHO05D009026 4.8e-69 265.0 205 67.3
AL8G21510 Arabidopsis lyrata HOM05D007131 ORTHO05D009026 8.1e-69 264.2 187 69.5
Potri.002G248800 Populus trichocarpa HOM05D007131 ORTHO05D009026 1.1e-68 263.8 197 69.5
arahy.Tifrunner.gnm1.ann1.4977NQ Arachis hypogaea HOM05D007131 ORTHO05D009026 3.1e-68 262.3 192 68.2
Ciclev10032761m.g Citrus clementina HOM05D007131 ORTHO05D009026 6.9e-68 261.2 205 68.8
A06p39100 Brassica napus HOM05D007131 ORTHO05D009026 1.2e-67 260.4 185 69.2
BcaC04g23770 Brassica carinata HOM05D007131 ORTHO05D009026 1.5e-67 260.0 186 69.4
C09p04870 Brassica napus HOM05D007131 ORTHO05D009026 1.5e-67 260.0 186 69.4
BcaB04g19580 Brassica carinata HOM05D007131 ORTHO05D009026 2.0e-67 259.6 186 69.4
Duzib211G0587 Durio zibethinus HOM05D007131 ORTHO05D009026 2.6e-67 259.2 196 70.4
Sp2g18910 Schrenkiella parvula HOM05D007131 ORTHO05D009026 2.6e-67 259.2 185 69.2
THA.LOC104818990 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 2.6e-67 259.2 193 69.4
EL10Ac7g17974 Beta vulgaris HOM05D007131 ORTHO05D009026 4.5e-67 258.5 203 63.5
CANSAT01G0405 Cannabis sativa HOM05D007131 ORTHO05D009026 4.5e-67 258.5 208 67.8
Carub.0008s0817 Capsella rubella HOM05D007131 ORTHO05D009026 4.5e-67 258.5 187 67.4
Sabra02G0189500 Salix brachista HOM05D007131 ORTHO05D009026 4.5e-67 258.5 196 68.9
Duzib138G1926 Durio zibethinus HOM05D007131 ORTHO05D009026 7.6e-67 257.7 196 69.9
THA.LOC104802654 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 1.0e-66 257.3 189 70.4
BolC7t44444H Brassica oleracea HOM05D007131 ORTHO05D009026 2.2e-66 256.1 185 67.6
Rhsim01G0249500 Rhododendron simsii HOM05D007131 ORTHO05D009026 2.2e-66 256.1 210 61.4
Sed0006902 Sechium edule HOM05D007131 ORTHO05D009026 4.9e-66 255.0 212 65.1
C07p39240 Brassica napus HOM05D007131 ORTHO05D009026 6.5e-66 254.6 185 67.6
Gorai.007G158200 Gossypium raimondii HOM05D007131 ORTHO05D009026 8.4e-66 254.2 203 65.5
HanXRQChr08g0231751 Helianthus annuus HOM05D007131 ORTHO05D009026 8.4e-66 254.2 203 61.1
Nitab4.5_0000040g0390 Nicotiana tabacum HOM05D007131 ORTHO05D009026 1.9e-65 253.1 202 64.4
Glyma.08G345600 Glycine max HOM05D007131 ORTHO05D009026 2.5e-65 252.7 201 64.2
A09p04560 Brassica napus HOM05D007131 ORTHO05D009026 5.5e-65 251.5 199 64.8
Gohir.A11G141300 Gossypium hirsutum HOM05D007131 ORTHO05D009026 5.5e-65 251.5 195 67.2
TAR362G0782 Trochodendron aralioides HOM05D007131 ORTHO05D009026 5.5e-65 251.5 196 66.3
BcaC06g30783 Brassica carinata HOM05D007131 ORTHO05D009026 7.1e-65 251.1 185 67.6
BraA09t36091Z Brassica rapa HOM05D007131 ORTHO05D009026 7.1e-65 251.1 199 64.8
ECA247G2839 Erigeron canadensis HOM05D004243 ORTHO05D005018 7.1e-65 251.1 207 60.4
Migut.N00650 Erythranthe guttata HOM05D007131 ORTHO05D009026 7.1e-65 251.1 204 61.3
BolC9t53415H Brassica oleracea HOM05D007131 ORTHO05D009026 9.3e-65 250.8 199 64.8
Lj1g0012821 Lotus japonicus HOM05D007131 ORTHO05D009026 2.1e-64 249.6 203 63.1
Sc24g0003400 Simmondsia chinensis HOM05D007131 ORTHO05D009026 1.0e-63 247.3 206 63.1
vmacro14706 Vaccinium macrocarpon HOM05D007131 ORTHO05D009026 3.9e-63 245.4 224 55.8
PSO675G2392 Papaver somniferum HOM05D007131 ORTHO05D009026 5.1e-63 245.0 203 61.6
Nitab4.5_0001471g0060 Nicotiana tabacum HOM05D007131 ORTHO05D009026 6.7e-63 244.6 201 62.2
SGA_v2.0_scaffold77G25283 Striga asiatica HOM05D007131 ORTHO05D009026 8.7e-63 244.2 204 63.2
Medtr7g053220 Medicago truncatula HOM05D007131 ORTHO05D009026 1.9e-62 243.0 195 64.6
Lalb_Chr13g0291041 Lupinus albus HOM05D007131 ORTHO05D009026 3.3e-62 242.3 197 62.9
Lsat_1_v5_gn_9_17941 Lactuca sativa HOM05D007131 ORTHO05D009026 1.6e-61 240.0 195 64.1
MSTRG.12759 Avicennia marina HOM05D007131 ORTHO05D009026 2.1e-61 239.6 189 61.9
PSO017G7069 Papaver somniferum HOM05D007131 ORTHO05D009026 2.8e-61 239.2 201 60.2
TPR.G26850 Trifolium pratense HOM05D007131 ORTHO05D009026 2.8e-61 239.2 196 61.2
DCAR_004756 Daucus carota HOM05D007131 ORTHO05D009026 6.3e-61 238.0 206 61.7
Peaxi162Scf01069g00214 Petunia axillaris HOM05D007131 ORTHO05D009026 8.2e-61 237.7 202 60.9
Psat3g150760 Pisum sativum HOM05D007131 ORTHO05D009026 8.2e-61 237.7 200 62.0
PGSC0003DMG400020651 Solanum tuberosum HOM05D007131 ORTHO05D009026 1.1e-60 237.3 202 62.9
Solyc06g007590.3 Solanum lycopersicum HOM05D007131 ORTHO05D009026 2.0e-59 233.0 202 60.9
CAN.G181.37 Capsicum annuum HOM05D007131 ORTHO05D009026 5.9e-59 231.5 168 69.6
unitig_37.g12881 Utricularia gibba HOM05D007131 ORTHO05D009026 1.1e-57 227.3 194 58.2
Aqoxy2G04077 Aquilegia oxysepala HOM05D007131 ORTHO05D009026 1.4e-57 226.9 202 57.4
Dinv28824 Davidia involucrata HOM05D007131 ORTHO05D009026 5.1e-55 218.4 145 73.1
Aa31sc517G10 Aethionema arabicum HOM05D007131 ORTHO05D009026 6.7e-55 218.0 241 51.0
HPP92_007612 Vanilla planifolia HOM05D007131 ORTHO05D009026 1.9e-54 216.5 191 58.1
Cc01_g16360 Coffea canephora HOM05D007131 ORTHO05D009026 3.3e-54 215.7 154 68.2
ATR1149G002 Amborella trichopoda HOM05D007131 ORTHO05D009026 7.4e-54 214.5 202 55.0
TWI36G0143 Tripterygium wilfordii HOM05D007131 ORTHO05D009026 6.3e-53 211.5 171 62.0
Atru.chr6.1589 Acer truncatum HOM05D007131 ORTHO05D009026 1.1e-52 210.7 197 60.9
Manes.12G051500 Manihot esculenta HOM05D007131 ORTHO05D009026 2.4e-52 209.5 180 62.8
Oeu064654.1 Olea europaea HOM05D007131 ORTHO05D009026 2.4e-52 209.5 167 62.9
VMungo1383G1151 Vigna mungo HOM05D007131 ORTHO05D009026 2.2e-50 203.0 204 55.4
Os12g0233300 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 2.9e-50 202.6 214 49.1
AT5G48545 Arabidopsis thaliana HOM05D007131 ORTHO05D009026 5.0e-50 201.8 144 70.1
Nn1g09828 Nelumbo nucifera HOM05D007131 ORTHO05D009026 1.0e-47 194.1 142 66.2
CDE08G0780 Ceratophyllum demersum HOM05D007131 ORTHO05D009026 3.9e-47 192.2 162 63.0
Gohir.D11G147600 Gossypium hirsutum HOM05D007131 ORTHO05D009026 1.5e-46 190.3 144 67.4
Pp3c1_40870 Physcomitrium patens HOM05D007131 ORTHO05D009026 1.8e-44 183.3 142 61.3
SMO201G0137 Selaginella moellendorffii HOM05D007131 ORTHO05D009026 1.7e-42 176.8 123 63.4
CBR_g41484 Chara braunii HOM05D007131 ORTHO05D009026 4.7e-40 168.7 146 56.2
AagrBONN_evm.TU.Sc2ySwM_368.401 Anthoceros agrestis HOM05D007131 ORTHO05D009026 7.9e-40 167.9 139 54.0
CBR_g28074 Chara braunii HOM05D007131 ORTHO05D009026 1.0e-39 167.5 146 54.8
AUR62022148 Chenopodium quinoa HOM05D007131 ORTHO05D009026 3.0e-39 166.0 274 38.0
Thhalv10005043m.g Eutrema salsugineum HOM05D007131 ORTHO05D009026 3.9e-39 165.6 125 64.0
Sopen06g002490 Solanum pennellii HOM05D007131 ORTHO05D009026 5.2e-39 165.2 122 70.5
Phvul.008G134700 Phaseolus vulgaris HOM05D007131 ORTHO05D009026 1.1e-38 164.1 125 68.8
GSVIVG01002500001 Vitis vinifera HOM05D007131 ORTHO05D009026 5.7e-38 161.8 103 79.6
SalBow3G2460 Salvia bowleyana HOM05D007131 ORTHO05D009026 9.1e-36 154.5 277 35.4
arahy.Tifrunner.gnm1.ann1.YI3R6M Arachis hypogaea HOM05D007131 ORTHO05D009026 2.7e-32 142.9 163 49.7
CARHR183470 Cardamine hirsuta HOM05D007131 ORTHO05D009026 5.7e-30 135.2 105 61.9
Lj2A1119T34 Lonicera japonica HOM05D007131 ORTHO05D009026 9.7e-30 134.4 113 64.6
AUR62001177 Chenopodium quinoa HOM05D007131 ORTHO05D009026 1.1e-25 120.9 207 38.2
QL09p048378 Quercus lobata HOM05D007131 ORTHO05D009026 1.7e-21 107.1 80 67.5
SEGI_25619 Sequoiadendron giganteum HOM05D007131 ORTHO05D009026 2.2e-21 106.7 84 64.3
CiPaw.14G045900 Carya illinoinensis HOM05D007131 ORTHO05D009026 3.7e-21 105.9 79 69.6
Cpa.g.sc8.95 Carica papaya HOM05D007131 ORTHO05D009026 4.1e-20 102.4 88 58.0
MCO06G116 Micromonas commoda HOM05D007131 ORTHO05D009026 5.9e-19 98.6 105 42.9
QL09p048788 Quercus lobata HOM05D002652 ORTHO05D002739 4.0e-15 85.9 126 42.9
Os11g0295000 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 2.0e-11 73.6 64 57.8
Gohir.D13G000600 Gossypium hirsutum HOM05D002397 ORTHO05D002667 1.8e-07 60.5 152 30.3
Gorai.013G000500 Gossypium raimondii HOM05D002397 ORTHO05D002667 1.8e-07 60.5 152 30.3
PSO675G0625 Papaver somniferum HOM05D002397 ORTHO05D002667 2.3e-07 60.1 124 26.6
Oeu034906.1 Olea europaea HOM05D002397 ORTHO05D002667 3.0e-07 59.7 150 31.3
PSO017G1677 Papaver somniferum HOM05D002397 ORTHO05D002667 3.0e-07 59.7 124 26.6
Cre06.g273000 Chlamydomonas reinhardtii HOM05D002397 ORTHO05D002667 5.2e-07 58.9 106 33.0
Sc19g0007740 Simmondsia chinensis HOM05D002397 ORTHO05D002667 5.2e-07 58.9 156 26.9
SGA_v2.0_scaffold66G22344 Striga asiatica HOM05D002397 ORTHO05D002667 5.2e-07 58.9 151 29.1
CANSAT35G0509 Cannabis sativa HOM05D002397 ORTHO05D002667 6.8e-07 58.5 119 32.8
Cre15.g639400 Chlamydomonas reinhardtii HOM05D005501 ORTHO05D007485 6.8e-07 58.5 142 28.9
CBR_g50359 Chara braunii HOM05D002397 ORTHO05D002667 8.9e-07 58.2 105 28.6
Migut.J01593 Erythranthe guttata HOM05D002397 ORTHO05D002667 8.9e-07 58.2 150 28.0
AUR62018472 Chenopodium quinoa HOM05D002397 ORTHO05D002667 1.2e-06 57.8 154 26.0
AUR62020952 Chenopodium quinoa HOM05D002397 ORTHO05D002667 1.5e-06 57.4 148 27.7
PGR142G3425 Punica granatum HOM05D002397 ORTHO05D002667 1.5e-06 57.4 154 28.6
Hund18476 Selenicereus undatus HOM05D007131 ORTHO05D009026 1.5e-06 57.4 125 36.0
SEGI_32624 Sequoiadendron giganteum HOM05D002397 ORTHO05D002667 2.0e-06 57.0 154 27.9
TPR.G33943 Trifolium pratense HOM05D002397 ORTHO05D002667 2.6e-06 56.6 148 25.7
MSTRG.19749 Avicennia marina HOM05D002397 ORTHO05D002667 3.4e-06 56.2 152 28.9
DCAR_001310 Daucus carota HOM05D002397 ORTHO05D009673 3.4e-06 56.2 117 28.2
Eucgr.K01707 Eucalyptus grandis HOM05D002397 ORTHO05D002667 3.4e-06 56.2 147 27.9
Hund19045 Selenicereus undatus HOM05D002397 ORTHO05D002667 4.4e-06 55.8 151 24.5
ATR0307G077 Amborella trichopoda HOM05D002397 ORTHO05D002667 5.7e-06 55.5 106 30.2
THA.LOC104812704 Tarenaya hassleriana HOM05D002397 ORTHO05D002667 5.7e-06 55.5 101 31.7
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 7.5e-06 55.1 87 27.6
RcHm_v2.0_Chr3g0494981 Rosa chinensis HOM05D002397 ORTHO05D002667 7.5e-06 55.1 149 28.9
CSS0046926 Camellia sinensis var. sinensis HOM05D002397 ORTHO05D002667 9.8e-06 54.7 121 26.4
HanXRQChr17g0539621 Helianthus annuus HOM05D002397 ORTHO05D002667 9.8e-06 54.7 148 27.0
Mapoly0066s0117 Marchantia polymorpha HOM05D002397 ORTHO05D002667 9.8e-06 54.7 151 22.5


User provided reference genes

Program Settings